HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-APR-12 4ER5 TITLE CRYSTAL STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH 2 MOLECULES OF TITLE 2 EPZ004777 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79- COMPND 5 HMTASE, LYSINE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 V2R PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS HISTONE, METHYLTRANSFERASE, EPIGENETICS, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,W.TEMPEL,W.YU,A.SCOPTON,Y.LI,K.T.NGUYEN,A.FEDERATION, AUTHOR 2 J.MARINEAU,J.QI,M.VEDADI,J.E.BRADNER,M.SCHAPIRA,C.H.ARROWSMITH, AUTHOR 3 A.M.EDWARDS,C.BOUNTRA,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 16-MAY-18 4ER5 1 JRNL REVDAT 2 15-NOV-17 4ER5 1 REMARK REVDAT 1 16-MAY-12 4ER5 0 JRNL AUTH W.YU,E.J.CHORY,A.K.WERNIMONT,W.TEMPEL,A.SCOPTON, JRNL AUTH 2 A.FEDERATION,J.J.MARINEAU,J.QI,D.BARSYTE-LOVEJOY,J.YI, JRNL AUTH 3 R.MARCELLUS,R.E.IACOB,J.R.ENGEN,C.GRIFFIN,A.AMAN, JRNL AUTH 4 E.WIENHOLDS,F.LI,J.PINEDA,G.ESTIU,T.SHATSEVA,T.HAJIAN, JRNL AUTH 5 R.AL-AWAR,J.E.DICK,M.VEDADI,P.J.BROWN,C.H.ARROWSMITH, JRNL AUTH 6 J.E.BRADNER,M.SCHAPIRA JRNL TITL CATALYTIC SITE REMODELLING OF THE DOT1L METHYLTRANSFERASE BY JRNL TITL 2 SELECTIVE INHIBITORS. JRNL REF NAT COMMUN V. 3 1288 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23250418 JRNL DOI 10.1038/NCOMMS2304 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : PDB ENTRY 3QOW REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2702 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1772 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3692 ; 1.307 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4314 ; 0.871 ; 2.988 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.011 ;23.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;13.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.913 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 558 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 0.659 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 657 ; 0.092 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2662 ; 1.253 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 1.624 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 2.757 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6645 57.9165 2.9241 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0980 REMARK 3 T33: 0.0321 T12: 0.0069 REMARK 3 T13: -0.0094 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 6.5240 L22: 2.3269 REMARK 3 L33: 0.5068 L12: -2.9837 REMARK 3 L13: -0.2355 L23: -0.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0803 S12: 0.3092 S13: 0.1284 REMARK 3 S21: -0.0418 S22: -0.0308 S23: -0.0793 REMARK 3 S31: 0.0043 S32: -0.0525 S33: 0.1111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ER5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22277 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 49.243 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.93900 REMARK 200 R SYM FOR SHELL (I) : 0.93900 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: RIGID BODY REFINEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NAFORMATE, 0.1 M NAACET, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.45267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.72633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.58950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.86317 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.31583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL MOLECULE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 57 REMARK 465 TYR A 58 REMARK 465 VAL A 59 REMARK 465 LEU A 60 REMARK 465 ILE A 61 REMARK 465 ASP A 62 REMARK 465 TRP A 305 REMARK 465 THR A 306 REMARK 465 GLY A 307 REMARK 465 ARG A 342 REMARK 465 ARG A 343 REMARK 465 ARG A 344 REMARK 465 GLN A 345 REMARK 465 GLN A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 ASN A 352 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 THR A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 362 REMARK 465 LYS A 363 REMARK 465 VAL A 364 REMARK 465 ALA A 365 REMARK 465 GLY A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 PRO A 371 REMARK 465 MET A 372 REMARK 465 ASP A 373 REMARK 465 SER A 374 REMARK 465 GLY A 375 REMARK 465 ALA A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 LYS A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 THR A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 PRO A 391 REMARK 465 SER A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 ARG A 395 REMARK 465 LYS A 396 REMARK 465 LYS A 397 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 MET A 406 REMARK 465 ALA A 407 REMARK 465 GLY A 408 REMARK 465 ARG A 409 REMARK 465 LYS A 410 REMARK 465 ARG A 411 REMARK 465 GLY A 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ARG A 42 CD NE CZ NH1 NH2 REMARK 470 LYS A 52 CE NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 GLU A 123 CD OE1 OE2 REMARK 470 LYS A 124 CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ASP A 156 CG OD1 OD2 REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 GLU A 196 CD OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLU A 215 CD OE1 OE2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 GLU A 255 CD OE1 OE2 REMARK 470 LYS A 261 CD CE NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CD NE CZ NH1 NH2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 VAL A 303 CG1 CG2 REMARK 470 SER A 304 OG REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 GLU A 323 CD OE1 OE2 REMARK 470 LYS A 333 NZ REMARK 470 GLU A 336 CD OE1 OE2 REMARK 470 GLU A 337 CD OE1 OE2 REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -159.44 -163.58 REMARK 500 GLU A 138 0.60 -59.34 REMARK 500 THR A 139 -34.63 -134.55 REMARK 500 ASN A 276 54.13 -114.46 REMARK 500 SER A 302 90.12 -161.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0QK A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0QK A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EQZ RELATED DB: PDB REMARK 900 RELATED ID: 4ER0 RELATED DB: PDB REMARK 900 RELATED ID: 4ER3 RELATED DB: PDB REMARK 900 RELATED ID: 4ER6 RELATED DB: PDB REMARK 900 RELATED ID: 4ER7 RELATED DB: PDB DBREF 4ER5 A 1 412 UNP Q8TEK3 DOT1L_HUMAN 1 412 SEQADV 4ER5 GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 413 GLY MET GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 A 413 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 A 413 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 A 413 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 A 413 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 A 413 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 A 413 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 A 413 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 A 413 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 A 413 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 A 413 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 A 413 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 A 413 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 A 413 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 A 413 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 A 413 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 A 413 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 A 413 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 A 413 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 A 413 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 A 413 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 A 413 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 A 413 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 A 413 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 A 413 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 A 413 TYR PHE SER SER LEU LYS ASN PRO LYS LEU ARG GLU GLU SEQRES 27 A 413 GLN GLU ALA ALA ARG ARG ARG GLN GLN ARG GLU SER LYS SEQRES 28 A 413 SER ASN ALA ALA THR PRO THR LYS GLY PRO GLU GLY LYS SEQRES 29 A 413 VAL ALA GLY PRO ALA ASP ALA PRO MET ASP SER GLY ALA SEQRES 30 A 413 GLU GLU GLU LYS ALA GLY ALA ALA THR VAL LYS LYS PRO SEQRES 31 A 413 SER PRO SER LYS ALA ARG LYS LYS LYS LEU ASN LYS LYS SEQRES 32 A 413 GLY ARG LYS MET ALA GLY ARG LYS ARG GLY HET 0QK A 501 39 HET 0QK A 502 39 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HETNAM 0QK 7-{5-[(3-{[(4-TERT-BUTYLPHENYL)CARBAMOYL]AMINO}PROPYL) HETNAM 2 0QK (PROPAN-2-YL)AMINO]-5-DEOXY-BETA-D-RIBOFURANOSYL}-7H- HETNAM 3 0QK PYRROLO[2,3-D]PYRIMIDIN-4-AMINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 0QK 2(C28 H41 N7 O4) FORMUL 4 UNX 5(X) FORMUL 9 HOH *20(H2 O) HELIX 1 1 ASP A 32 ILE A 48 1 17 HELIX 2 2 ILE A 48 MET A 55 1 8 HELIX 3 3 SER A 67 GLY A 91 1 25 HELIX 4 4 SER A 103 VAL A 119 1 17 HELIX 5 5 ASP A 121 LEU A 125 5 5 HELIX 6 6 THR A 139 ILE A 151 1 13 HELIX 7 7 GLY A 167 THR A 177 1 11 HELIX 8 8 ALA A 188 GLY A 210 1 23 HELIX 9 9 SER A 225 ASN A 234 1 10 HELIX 10 10 GLY A 246 ALA A 258 1 13 HELIX 11 11 ASN A 280 LEU A 284 5 5 HELIX 12 12 ASP A 286 THR A 289 5 4 HELIX 13 13 ARG A 319 ASN A 331 1 13 HELIX 14 14 ASN A 331 GLU A 339 1 9 SHEET 1 A 2 LEU A 5 LEU A 9 0 SHEET 2 A 2 ALA A 18 TRP A 22 -1 O TYR A 20 N LEU A 7 SHEET 1 B 7 TYR A 216 ARG A 220 0 SHEET 2 B 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 B 7 LEU A 158 LEU A 162 1 N PHE A 159 O TYR A 183 SHEET 4 B 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 B 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 B 7 TYR A 313 ILE A 317 -1 O TYR A 313 N SER A 268 SHEET 7 B 7 MET A 291 GLU A 295 -1 N VAL A 294 O LEU A 314 CISPEP 1 TRP A 22 PRO A 23 0 -1.88 CISPEP 2 GLU A 129 PRO A 130 0 7.21 SITE 1 AC1 16 TYR A 128 LEU A 143 ASP A 161 GLY A 163 SITE 2 AC1 16 SER A 164 GLY A 165 VAL A 169 GLU A 186 SITE 3 AC1 16 LYS A 187 GLY A 221 ASP A 222 PHE A 223 SITE 4 AC1 16 ASN A 241 PHE A 245 SER A 268 SER A 269 SITE 1 AC2 13 GLU A 46 LEU A 111 TYR A 115 PRO A 122 SITE 2 AC2 13 GLU A 123 LEU A 125 ASN A 126 ASN A 127 SITE 3 AC2 13 TYR A 128 PRO A 133 TYR A 136 GLY A 137 SITE 4 AC2 13 GLN A 168 CRYST1 150.605 150.605 53.179 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006640 0.003834 0.000000 0.00000 SCALE2 0.000000 0.007667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018804 0.00000 MASTER 437 0 7 14 9 0 8 6 0 0 0 32 END