HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-APR-12 4ER0 TITLE CRYSTAL STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH INHIBITOR FED1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79- COMPND 5 HMTASE, LYSINE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 V2R PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS HISTONE, METHYLTRANSFERASE, EPIGENETICS, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,W.TEMPEL,W.YU,Y.LI,K.T.NGUYEN,A.FEDERATION,J.MARINEAU, AUTHOR 2 J.QI,M.VEDADI,J.E.BRADNER,M.SCHAPIRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 C.BOUNTRA,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 16-MAY-18 4ER0 1 JRNL REVDAT 2 15-NOV-17 4ER0 1 REMARK REVDAT 1 02-MAY-12 4ER0 0 JRNL AUTH W.YU,E.J.CHORY,A.K.WERNIMONT,W.TEMPEL,A.SCOPTON, JRNL AUTH 2 A.FEDERATION,J.J.MARINEAU,J.QI,D.BARSYTE-LOVEJOY,J.YI, JRNL AUTH 3 R.MARCELLUS,R.E.IACOB,J.R.ENGEN,C.GRIFFIN,A.AMAN, JRNL AUTH 4 E.WIENHOLDS,F.LI,J.PINEDA,G.ESTIU,T.SHATSEVA,T.HAJIAN, JRNL AUTH 5 R.AL-AWAR,J.E.DICK,M.VEDADI,P.J.BROWN,C.H.ARROWSMITH, JRNL AUTH 6 J.E.BRADNER,M.SCHAPIRA JRNL TITL CATALYTIC SITE REMODELLING OF THE DOT1L METHYLTRANSFERASE BY JRNL TITL 2 SELECTIVE INHIBITORS. JRNL REF NAT COMMUN V. 3 1288 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23250418 JRNL DOI 10.1038/NCOMMS2304 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2425 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : -2.23000 REMARK 3 B33 (A**2) : 3.35000 REMARK 3 B12 (A**2) : -1.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2558 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1666 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3492 ; 1.020 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4069 ; 0.747 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 6.858 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;34.993 ;24.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;16.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2868 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 515 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 0.970 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 635 ; 0.161 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2567 ; 1.815 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 964 ; 2.205 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 924 ; 3.630 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ER0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24065 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: RIGID BODY REFINEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NAFORMATE, 0.1 M NAACET, 0.5 MM REMARK 280 INHIBITOR IN H2O, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.25200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.62600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.43900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.81300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL MOLECULE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 56 REMARK 465 ASN A 57 REMARK 465 TYR A 58 REMARK 465 VAL A 59 REMARK 465 LEU A 60 REMARK 465 ILE A 61 REMARK 465 GLU A 123 REMARK 465 LYS A 124 REMARK 465 LEU A 125 REMARK 465 ASN A 126 REMARK 465 ASN A 127 REMARK 465 TYR A 128 REMARK 465 GLU A 129 REMARK 465 PRO A 130 REMARK 465 PHE A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 GLU A 134 REMARK 465 VAL A 135 REMARK 465 TYR A 136 REMARK 465 GLY A 137 REMARK 465 ALA A 340 REMARK 465 ALA A 341 REMARK 465 ARG A 342 REMARK 465 ARG A 343 REMARK 465 ARG A 344 REMARK 465 GLN A 345 REMARK 465 GLN A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 ASN A 352 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 THR A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 362 REMARK 465 LYS A 363 REMARK 465 VAL A 364 REMARK 465 ALA A 365 REMARK 465 GLY A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 PRO A 371 REMARK 465 MET A 372 REMARK 465 ASP A 373 REMARK 465 SER A 374 REMARK 465 GLY A 375 REMARK 465 ALA A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 LYS A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 THR A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 PRO A 391 REMARK 465 SER A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 ARG A 395 REMARK 465 LYS A 396 REMARK 465 LYS A 397 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 MET A 406 REMARK 465 ALA A 407 REMARK 465 GLY A 408 REMARK 465 ARG A 409 REMARK 465 LYS A 410 REMARK 465 ARG A 411 REMARK 465 GLY A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 MET A 417 REMARK 465 ASN A 418 REMARK 465 THR A 419 REMARK 465 ALA A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 GLU A 16 CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ARG A 42 CD NE CZ NH1 NH2 REMARK 470 LYS A 52 CE NZ REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LYS A 97 CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 THR A 139 OG1 CG2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLU A 215 CD OE1 OE2 REMARK 470 ARG A 220 NE CZ NH1 NH2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 261 CD CE NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CD NE CZ NH1 NH2 REMARK 470 LEU A 299 CG CD1 CD2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 SER A 302 OG REMARK 470 TRP A 305 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 305 CZ3 CH2 REMARK 470 THR A 306 OG1 CG2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 TYR A 312 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 336 CD OE1 OE2 REMARK 470 GLU A 337 CD OE1 OE2 REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 186 OAH AW1 A 501 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -9.44 -59.02 REMARK 500 ALA A 54 6.35 -67.72 REMARK 500 ASP A 121 96.76 -164.76 REMARK 500 LEU A 284 -39.39 -36.70 REMARK 500 SER A 297 124.56 -37.69 REMARK 500 SER A 304 -175.12 -69.13 REMARK 500 GLU A 337 -72.67 -44.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AW1 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EQZ RELATED DB: PDB REMARK 900 RELATED ID: 4ER3 RELATED DB: PDB REMARK 900 RELATED ID: 4ER5 RELATED DB: PDB REMARK 900 RELATED ID: 4ER6 RELATED DB: PDB REMARK 900 RELATED ID: 4ER7 RELATED DB: PDB DBREF 4ER0 A 1 420 UNP Q8TEK3 DOT1L_HUMAN 1 420 SEQADV 4ER0 GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 421 GLY MET GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 A 421 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 A 421 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 A 421 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 A 421 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 A 421 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 A 421 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 A 421 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 A 421 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 A 421 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 A 421 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 A 421 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 A 421 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 A 421 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 A 421 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 A 421 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 A 421 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 A 421 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 A 421 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 A 421 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 A 421 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 A 421 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 A 421 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 A 421 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 A 421 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 A 421 TYR PHE SER SER LEU LYS ASN PRO LYS LEU ARG GLU GLU SEQRES 27 A 421 GLN GLU ALA ALA ARG ARG ARG GLN GLN ARG GLU SER LYS SEQRES 28 A 421 SER ASN ALA ALA THR PRO THR LYS GLY PRO GLU GLY LYS SEQRES 29 A 421 VAL ALA GLY PRO ALA ASP ALA PRO MET ASP SER GLY ALA SEQRES 30 A 421 GLU GLU GLU LYS ALA GLY ALA ALA THR VAL LYS LYS PRO SEQRES 31 A 421 SER PRO SER LYS ALA ARG LYS LYS LYS LEU ASN LYS LYS SEQRES 32 A 421 GLY ARG LYS MET ALA GLY ARG LYS ARG GLY ARG PRO LYS SEQRES 33 A 421 LYS MET ASN THR ALA HET AW1 A 501 39 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HETNAM AW1 5'-[(3-{[(4-TERT-BUTYLPHENYL)CARBAMOYL]AMINO}PROPYL) HETNAM 2 AW1 (PROPAN-2-YL)AMINO]-5'-DEOXYADENOSINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 AW1 C27 H40 N8 O4 FORMUL 3 UNX 3(X) FORMUL 6 HOH *6(H2 O) HELIX 1 1 ALA A 33 ILE A 48 1 16 HELIX 2 2 ILE A 48 ALA A 54 1 7 HELIX 3 3 SER A 67 GLY A 91 1 25 HELIX 4 4 SER A 103 VAL A 119 1 17 HELIX 5 5 THR A 139 ILE A 151 1 13 HELIX 6 6 GLY A 167 THR A 177 1 11 HELIX 7 7 ALA A 188 GLY A 210 1 23 HELIX 8 8 SER A 225 THR A 235 1 11 HELIX 9 9 GLY A 246 ALA A 258 1 13 HELIX 10 10 ASP A 286 THR A 289 5 4 HELIX 11 11 ARG A 319 ASN A 331 1 13 HELIX 12 12 ASN A 331 GLU A 339 1 9 SHEET 1 A 2 GLU A 6 LEU A 9 0 SHEET 2 A 2 ALA A 18 PRO A 21 -1 O TYR A 20 N LEU A 7 SHEET 1 B 2 VAL A 26 ASP A 28 0 SHEET 2 B 2 HIS A 31 ASP A 32 -1 O HIS A 31 N TYR A 27 SHEET 1 C 7 TYR A 216 ARG A 220 0 SHEET 2 C 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 C 7 LEU A 158 LEU A 162 1 N PHE A 159 O TYR A 183 SHEET 4 C 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 C 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 C 7 TYR A 312 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 C 7 MET A 291 LEU A 296 -1 N LEU A 296 O TYR A 312 CISPEP 1 TRP A 22 PRO A 23 0 -10.33 SITE 1 AC1 14 ASP A 161 GLY A 163 VAL A 169 GLU A 186 SITE 2 AC1 14 LYS A 187 GLY A 221 ASP A 222 PHE A 223 SITE 3 AC1 14 PHE A 239 ASN A 241 PHE A 245 VAL A 267 SITE 4 AC1 14 SER A 268 SER A 269 CRYST1 150.590 150.590 52.878 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006641 0.003834 0.000000 0.00000 SCALE2 0.000000 0.007668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018911 0.00000 MASTER 448 0 4 12 11 0 4 6 0 0 0 33 END