HEADER TOXIN/ISOMERASE 11-APR-12 4ELZ TITLE CCDBVFI:GYRA14VFI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 362-493; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CCDB; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 312309; SOURCE 4 STRAIN: ATCC 700601 / ES114; SOURCE 5 GENE: GYRA, VF_1204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: VIBRIO FISCHERI; SOURCE 13 ORGANISM_TAXID: 388396; SOURCE 14 STRAIN: MJ11; SOURCE 15 GENE: CCDB, VFMJ11_A0651; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: B462; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS ALPHA+BETA, TOPOISOMERASE, TOXIN-ISOMERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DE JONGE,M.SIMIC,L.BUTS,S.HAESAERTS,K.ROELANTS,A.GARCIA-PINO, AUTHOR 2 Y.STERCKX,H.DE GREVE,J.LAH,R.LORIS REVDAT 1 30-MAY-12 4ELZ 0 SPRSDE 30-MAY-12 4ELZ 3KUA JRNL AUTH N.DE JONGE,M.SIMIC,L.BUTS,S.HAESAERTS,K.ROELANTS, JRNL AUTH 2 A.GARCIA-PINO,Y.STERCKX,H.DE GREVE,J.LAH,R.LORIS JRNL TITL ALTERNATIVE INTERACTIONS DEFINE GYRASE SPECIFICITY IN THE JRNL TITL 2 CCDB FAMILY. JRNL REF MOL.MICROBIOL. V. 84 965 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22582791 JRNL DOI 10.1111/J.1365-2958.2012.08069.X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 30404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.9397 - 4.8577 1.00 2892 162 0.2027 0.2369 REMARK 3 2 4.8577 - 3.8709 1.00 2773 137 0.1533 0.1900 REMARK 3 3 3.8709 - 3.3860 1.00 2738 151 0.1826 0.2114 REMARK 3 4 3.3860 - 3.0784 0.98 2685 143 0.1966 0.2882 REMARK 3 5 3.0784 - 2.8589 0.94 2557 136 0.2004 0.2709 REMARK 3 6 2.8589 - 2.6911 0.93 2512 141 0.2082 0.3111 REMARK 3 7 2.6911 - 2.5568 0.93 2524 133 0.2166 0.2755 REMARK 3 8 2.5568 - 2.4458 0.93 2524 139 0.2224 0.2719 REMARK 3 9 2.4458 - 2.3519 0.94 2538 130 0.2289 0.2943 REMARK 3 10 2.3519 - 2.2709 0.94 2526 150 0.2231 0.3202 REMARK 3 11 2.2709 - 2.2001 0.96 2598 115 0.2460 0.2905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 67.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62740 REMARK 3 B22 (A**2) : -0.00370 REMARK 3 B33 (A**2) : -1.62380 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3739 REMARK 3 ANGLE : 1.082 5088 REMARK 3 CHIRALITY : 0.075 616 REMARK 3 PLANARITY : 0.005 648 REMARK 3 DIHEDRAL : 13.843 1358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A and resi 352:494 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0120 -29.5540 -47.1118 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.1249 REMARK 3 T33: 0.0915 T12: -0.0286 REMARK 3 T13: 0.0242 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.0223 L22: 3.5177 REMARK 3 L33: 1.5124 L12: -1.2613 REMARK 3 L13: 1.3050 L23: -1.3066 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: 0.0402 S13: -0.1753 REMARK 3 S21: 0.1344 S22: -0.0892 S23: -0.1908 REMARK 3 S31: 0.0143 S32: 0.1783 S33: 0.0198 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain B and resi 362:492 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6683 -1.6922 -48.4181 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.1238 REMARK 3 T33: 0.2209 T12: -0.0175 REMARK 3 T13: -0.0298 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.2837 L22: 2.7928 REMARK 3 L33: 1.8006 L12: -1.3994 REMARK 3 L13: -0.8808 L23: 0.9955 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: 0.1035 S13: 0.3872 REMARK 3 S21: -0.1266 S22: -0.1100 S23: 0.1022 REMARK 3 S31: -0.3165 S32: -0.1210 S33: 0.0297 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain C and resi 2:105 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4142 -23.6106 -26.8668 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.1472 REMARK 3 T33: 0.1071 T12: -0.0674 REMARK 3 T13: 0.0166 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.5523 L22: 5.0158 REMARK 3 L33: 3.1755 L12: 0.8555 REMARK 3 L13: -0.0065 L23: -1.2595 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: -0.0647 S13: -0.1621 REMARK 3 S21: 0.0699 S22: 0.1827 S23: 0.0849 REMARK 3 S31: 0.0391 S32: -0.3480 S33: -0.0155 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain D and resi 2:105 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6824 -8.0463 -26.2625 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.2090 REMARK 3 T33: 0.2094 T12: -0.0563 REMARK 3 T13: -0.0751 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.2797 L22: 4.5292 REMARK 3 L33: 2.8541 L12: 0.1671 REMARK 3 L13: -0.4978 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: -0.1935 S13: 0.1156 REMARK 3 S21: 0.3432 S22: 0.0441 S23: -0.4562 REMARK 3 S31: 0.0183 S32: 0.1653 S33: 0.0634 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ELZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB071785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8423 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.131 REMARK 200 RESOLUTION RANGE LOW (A) : 16.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 44.600 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : 0.15600 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NAH2PO4, 0.8M K2HPO4, 100MM CAPS, REMARK 280 PH 10.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.75250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.25100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.25100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.75250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 342 REMARK 465 GLY A 343 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 MET B 342 REMARK 465 GLY B 343 REMARK 465 SER B 344 REMARK 465 SER B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 465 SER B 352 REMARK 465 SER B 353 REMARK 465 GLY B 354 REMARK 465 LEU B 355 REMARK 465 VAL B 356 REMARK 465 PRO B 357 REMARK 465 ARG B 358 REMARK 465 GLY B 359 REMARK 465 SER B 360 REMARK 465 HIS B 361 REMARK 465 ALA B 493 REMARK 465 SER B 494 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 ASP D 47 REMARK 465 LYS D 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 364 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 365 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 369 OE1 OE2 REMARK 470 LYS A 372 CD CE NZ REMARK 470 ARG A 426 NE CZ NH1 NH2 REMARK 470 ASP A 430 CG OD1 OD2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 GLU A 452 CG CD OE1 OE2 REMARK 470 GLU A 472 CG CD OE1 OE2 REMARK 470 GLU A 477 CD OE1 OE2 REMARK 470 GLU A 484 CG CD OE1 OE2 REMARK 470 MET B 362 CG SD CE REMARK 470 ARG B 364 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 365 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 372 CD CE NZ REMARK 470 GLU B 408 OE1 REMARK 470 ASN B 419 CB CG OD1 ND2 REMARK 470 GLU B 425 CD OE1 OE2 REMARK 470 ARG B 426 NE CZ NH1 NH2 REMARK 470 ASP B 430 CG OD1 OD2 REMARK 470 GLU B 440 OE1 OE2 REMARK 470 GLU B 445 CG CD OE1 OE2 REMARK 470 GLN B 453 OE1 NE2 REMARK 470 GLU B 484 CD OE1 OE2 REMARK 470 GLU B 487 CD OE1 OE2 REMARK 470 LYS C 10 CE NZ REMARK 470 LYS C 12 CG CD CE NZ REMARK 470 LYS C 16 NZ REMARK 470 ASP C 30 CG OD1 OD2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 LEU C 46 CG CD1 CD2 REMARK 470 ASP C 47 CG OD1 OD2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 LYS C 78 CE NZ REMARK 470 LYS D 8 CE NZ REMARK 470 LYS D 10 CD CE NZ REMARK 470 LYS D 12 CB CG CD CE NZ REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 LEU D 45 CG CD1 CD2 REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 ASP D 61 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 360 139.75 75.40 REMARK 500 GLU B 445 117.91 -26.57 REMARK 500 ILE C 102 -68.35 -100.07 REMARK 500 LEU D 45 33.03 -92.73 REMARK 500 PRO D 51 -5.88 -46.37 REMARK 500 SER D 52 -59.66 73.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 226 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH D 230 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH D 232 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH D 233 DISTANCE = 5.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JSC RELATED DB: PDB REMARK 900 CCDBVFI-FORMI-PH7.0 REMARK 900 RELATED ID: 3JRZ RELATED DB: PDB REMARK 900 CCDBVFI-FORMII-PH5.6 DBREF 4ELZ A 363 494 UNP Q5E5J7 Q5E5J7_VIBF1 362 493 DBREF 4ELZ B 363 494 UNP Q5E5J7 Q5E5J7_VIBF1 362 493 DBREF 4ELZ C 1 105 UNP B5EU32 B5EU32_VIBFM 1 105 DBREF 4ELZ D 1 105 UNP B5EU32 B5EU32_VIBFM 1 105 SEQADV 4ELZ MET A 342 UNP Q5E5J7 INITIATING METHIONINE SEQADV 4ELZ GLY A 343 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER A 344 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER A 345 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 346 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 347 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 348 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 349 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 350 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 351 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER A 352 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER A 353 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ GLY A 354 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ LEU A 355 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ VAL A 356 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ PRO A 357 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ ARG A 358 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ GLY A 359 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER A 360 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS A 361 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ MET A 362 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ MET B 342 UNP Q5E5J7 INITIATING METHIONINE SEQADV 4ELZ GLY B 343 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER B 344 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER B 345 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 346 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 347 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 348 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 349 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 350 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 351 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER B 352 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER B 353 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ GLY B 354 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ LEU B 355 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ VAL B 356 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ PRO B 357 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ ARG B 358 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ GLY B 359 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ SER B 360 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ HIS B 361 UNP Q5E5J7 EXPRESSION TAG SEQADV 4ELZ MET B 362 UNP Q5E5J7 EXPRESSION TAG SEQRES 1 A 153 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 153 LEU VAL PRO ARG GLY SER HIS MET THR ARG ARG THR ILE SEQRES 3 A 153 PHE GLU LEU ARG LYS ALA ARG ASP ARG ALA HIS ILE LEU SEQRES 4 A 153 GLU GLY LEU ALA LEU ALA LEU ALA ASN ILE ASP GLU ILE SEQRES 5 A 153 ILE GLU LEU ILE LYS ASN ALA PRO THR PRO ALA GLU ALA SEQRES 6 A 153 LYS GLU GLY LEU ILE SER ARG GLY TRP ASP LEU GLY ASN SEQRES 7 A 153 VAL ALA SER MET LEU GLU ARG ALA GLY THR ASP ALA ALA SEQRES 8 A 153 ARG PRO ASP TRP LEU GLU PRO GLU PHE GLY ILE ARG GLU SEQRES 9 A 153 GLY LYS TYR PHE LEU THR GLU GLN GLN ALA GLN ALA ILE SEQRES 10 A 153 LEU GLU LEU ARG LEU HIS ARG LEU THR GLY LEU GLU HIS SEQRES 11 A 153 GLU LYS ILE LEU ASP GLU TYR LYS ALA LEU LEU ASP GLU SEQRES 12 A 153 ILE ALA GLU LEU MET HIS ILE LEU ALA SER SEQRES 1 B 153 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 153 LEU VAL PRO ARG GLY SER HIS MET THR ARG ARG THR ILE SEQRES 3 B 153 PHE GLU LEU ARG LYS ALA ARG ASP ARG ALA HIS ILE LEU SEQRES 4 B 153 GLU GLY LEU ALA LEU ALA LEU ALA ASN ILE ASP GLU ILE SEQRES 5 B 153 ILE GLU LEU ILE LYS ASN ALA PRO THR PRO ALA GLU ALA SEQRES 6 B 153 LYS GLU GLY LEU ILE SER ARG GLY TRP ASP LEU GLY ASN SEQRES 7 B 153 VAL ALA SER MET LEU GLU ARG ALA GLY THR ASP ALA ALA SEQRES 8 B 153 ARG PRO ASP TRP LEU GLU PRO GLU PHE GLY ILE ARG GLU SEQRES 9 B 153 GLY LYS TYR PHE LEU THR GLU GLN GLN ALA GLN ALA ILE SEQRES 10 B 153 LEU GLU LEU ARG LEU HIS ARG LEU THR GLY LEU GLU HIS SEQRES 11 B 153 GLU LYS ILE LEU ASP GLU TYR LYS ALA LEU LEU ASP GLU SEQRES 12 B 153 ILE ALA GLU LEU MET HIS ILE LEU ALA SER SEQRES 1 C 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 C 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 C 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 C 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 C 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 C 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 C 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 C 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 C 105 ILE SEQRES 1 D 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 D 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 D 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 D 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 D 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 D 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 D 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 D 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 D 105 ILE HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *193(H2 O) HELIX 1 1 HIS A 361 ALA A 388 1 28 HELIX 2 2 ASN A 389 ASN A 399 1 11 HELIX 3 3 THR A 402 SER A 412 1 11 HELIX 4 4 LEU A 417 ASN A 419 5 3 HELIX 5 5 VAL A 420 GLU A 425 1 6 HELIX 6 6 ARG A 426 ALA A 432 1 7 HELIX 7 7 THR A 451 GLU A 460 1 10 HELIX 8 8 LEU A 461 LEU A 466 5 6 HELIX 9 9 THR A 467 LEU A 492 1 26 HELIX 10 10 THR B 363 LEU B 387 1 25 HELIX 11 11 ASN B 389 ALA B 400 1 12 HELIX 12 12 THR B 402 SER B 412 1 11 HELIX 13 13 VAL B 420 GLU B 425 1 6 HELIX 14 14 ARG B 426 ASP B 430 5 5 HELIX 15 15 THR B 451 LEU B 461 1 11 HELIX 16 16 ARG B 462 LEU B 466 5 5 HELIX 17 17 THR B 467 LEU B 492 1 26 HELIX 18 18 SER C 26 ASP C 30 5 5 HELIX 19 19 GLU C 44 LEU C 46 5 3 HELIX 20 20 THR C 69 MET C 72 5 4 HELIX 21 21 LYS C 78 LEU C 80 5 3 HELIX 22 22 PHE C 90 THR C 103 1 14 HELIX 23 23 SER D 26 ASP D 30 5 5 HELIX 24 24 GLU D 44 LEU D 46 5 3 HELIX 25 25 THR D 69 MET D 72 5 4 HELIX 26 26 LYS D 78 SER D 81 5 4 HELIX 27 27 PHE D 90 THR D 103 1 14 SHEET 1 A 2 GLY A 442 ARG A 444 0 SHEET 2 A 2 LYS A 447 PHE A 449 -1 O LYS A 447 N ARG A 444 SHEET 1 B 3 TRP B 415 ASP B 416 0 SHEET 2 B 3 LYS B 447 PHE B 449 -1 O TYR B 448 N TRP B 415 SHEET 3 B 3 GLY B 442 ARG B 444 -1 N GLY B 442 O PHE B 449 SHEET 1 C 4 THR C 57 ILE C 60 0 SHEET 2 C 4 GLY C 63 MET C 67 -1 O PHE C 65 N ILE C 58 SHEET 3 C 4 THR C 34 PRO C 42 -1 N THR C 41 O ILE C 66 SHEET 4 C 4 THR C 73 PRO C 76 -1 O THR C 73 N VAL C 37 SHEET 1 D 6 THR C 57 ILE C 60 0 SHEET 2 D 6 GLY C 63 MET C 67 -1 O PHE C 65 N ILE C 58 SHEET 3 D 6 THR C 34 PRO C 42 -1 N THR C 41 O ILE C 66 SHEET 4 D 6 TYR C 20 ASP C 23 -1 N TYR C 20 O LEU C 40 SHEET 5 D 6 THR C 5 LYS C 8 -1 N TYR C 7 O PHE C 21 SHEET 6 D 6 PRO C 83 GLU C 86 -1 O VAL C 84 N LEU C 6 SHEET 1 E 4 THR D 57 ILE D 60 0 SHEET 2 E 4 GLY D 63 MET D 67 -1 O PHE D 65 N ILE D 58 SHEET 3 E 4 THR D 34 PRO D 42 -1 N THR D 41 O ILE D 66 SHEET 4 E 4 THR D 73 PRO D 76 -1 O THR D 73 N VAL D 37 SHEET 1 F 6 THR D 57 ILE D 60 0 SHEET 2 F 6 GLY D 63 MET D 67 -1 O PHE D 65 N ILE D 58 SHEET 3 F 6 THR D 34 PRO D 42 -1 N THR D 41 O ILE D 66 SHEET 4 F 6 TYR D 20 ASP D 23 -1 N TYR D 20 O LEU D 40 SHEET 5 F 6 THR D 5 LYS D 8 -1 N TYR D 7 O PHE D 21 SHEET 6 F 6 PRO D 83 GLU D 86 -1 O VAL D 84 N LEU D 6 CISPEP 1 GLU B 445 GLY B 446 0 -8.59 SITE 1 AC1 8 ARG A 374 ALA A 377 HIS A 378 GLU A 381 SITE 2 AC1 8 THR A 429 ALA A 432 ARG A 433 PRO A 434 CRYST1 53.505 94.590 120.502 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008299 0.00000 MASTER 406 0 1 27 25 0 2 6 0 0 0 42 END