HEADER TRANSFERASE 16-MAR-12 4E6Y TITLE TYPE II CITRATE SYNTHASE FROM VIBRIO VULNIFICUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 STRAIN: CMCP6; SOURCE 5 GENE: GLTA, VV1_0162; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, TYPE II CITRATE SYNTHASE, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.GU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 15-NOV-17 4E6Y 1 REMARK REVDAT 1 28-MAR-12 4E6Y 0 JRNL AUTH J.OSIPIUK,M.GU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL TYPE II CITRATE SYNTHASE FROM VIBRIO VULNIFICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.407 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3465 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4692 ; 1.673 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 6.158 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.890 ;23.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;18.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;23.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2667 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9121 25.7548 13.5515 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0449 REMARK 3 T33: 0.0412 T12: -0.0122 REMARK 3 T13: 0.0002 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.4289 L22: 0.7141 REMARK 3 L33: 0.9798 L12: 0.1203 REMARK 3 L13: 0.1409 L23: -0.2855 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0256 S13: 0.0013 REMARK 3 S21: -0.0245 S22: -0.0259 S23: -0.1559 REMARK 3 S31: -0.0610 S32: 0.2024 S33: 0.0404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4E6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.40 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.93900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 3L96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, 20 % PEG-3350, REMARK 280 20 MM HEPES BUFFER, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.82450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.82450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.82450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.82450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.82450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 76.82450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BASED ON PISA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 231 NH1 ARG A 409 7555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 265 CG HIS A 265 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 202 CG - SE - CE ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO A 298 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 -92.50 -101.41 REMARK 500 GLU A 11 -54.00 -143.59 REMARK 500 ASP A 44 79.23 -152.24 REMARK 500 ARG A 70 50.24 31.80 REMARK 500 HIS A 123 8.53 -66.74 REMARK 500 HIS A 230 40.89 -145.64 REMARK 500 GLU A 231 -148.50 64.71 REMARK 500 ASP A 294 106.58 -55.14 REMARK 500 TYR A 312 128.14 -171.62 REMARK 500 SER A 349 -77.08 -121.16 REMARK 500 ASP A 350 119.51 -22.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91458 RELATED DB: TARGETTRACK DBREF 4E6Y A 1 429 UNP Q8DFP4 Q8DFP4_VIBVU 1 429 SEQADV 4E6Y SER A -2 UNP Q8DFP4 EXPRESSION TAG SEQADV 4E6Y ASN A -1 UNP Q8DFP4 EXPRESSION TAG SEQADV 4E6Y ALA A 0 UNP Q8DFP4 EXPRESSION TAG SEQRES 1 A 432 SER ASN ALA MSE ALA ASP LYS LYS ALA THR LEU HIS VAL SEQRES 2 A 432 GLU GLY LYS ALA PRO ILE GLU LEU PRO ILE MSE GLU GLY SEQRES 3 A 432 SER LEU GLY THR PRO VAL ILE ASP VAL ARG LYS LEU GLY SEQRES 4 A 432 ALA ASN GLY TYR PHE THR PHE ASP PRO GLY PHE LEU ALA SEQRES 5 A 432 THR ALA SER CYS GLU SER GLN ILE THR TYR ILE ASP GLY SEQRES 6 A 432 GLY LYS GLY ILE LEU LEU HIS ARG GLY TYR PRO ILE ASP SEQRES 7 A 432 GLN LEU ALA ASN ASN ALA ASP TYR LEU GLU VAL CYS TYR SEQRES 8 A 432 ILE LEU LEU TYR GLY GLU ALA PRO THR ARG GLU GLN TYR SEQRES 9 A 432 GLU LYS PHE LYS THR THR VAL THR ARG HIS THR MSE VAL SEQRES 10 A 432 HIS GLU GLN ILE ALA SER PHE PHE HIS GLY PHE ARG ARG SEQRES 11 A 432 ASP ALA HIS PRO MSE ALA VAL MSE CYS GLY VAL VAL GLY SEQRES 12 A 432 ALA LEU ALA ALA PHE TYR HIS ASP SER LEU ASP ILE ASN SEQRES 13 A 432 ASN ASP LEU HIS ARG GLU ILE THR ALA TYR ARG LEU LEU SEQRES 14 A 432 SER LYS MSE PRO THR LEU ALA ALA MSE CYS TYR LYS TYR SEQRES 15 A 432 SER THR GLY GLN PRO PHE ILE TYR PRO ARG ASN ASP LEU SEQRES 16 A 432 SER TYR ALA GLU ASN PHE LEU HIS MSE MSE PHE ALA THR SEQRES 17 A 432 PRO CYS GLU GLU TYR GLU VAL ASN PRO VAL VAL ALA ARG SEQRES 18 A 432 ALA MSE ASP LYS ILE PHE THR LEU HIS ALA ASP HIS GLU SEQRES 19 A 432 GLN ASN ALA SER THR SER THR VAL ARG LEU ALA GLY SER SEQRES 20 A 432 SER GLY ALA ASN PRO PHE ALA CYS ILE ALA ALA GLY ILE SEQRES 21 A 432 ALA SER LEU TRP GLY PRO ALA HIS GLY GLY ALA ASN GLU SEQRES 22 A 432 ALA CYS LEU LYS MSE LEU GLU GLU ILE GLY SER VAL ASP SEQRES 23 A 432 ASN ILE PRO GLU TYR VAL ASP ARG ALA LYS ASP LYS ASP SEQRES 24 A 432 ASP PRO PHE ARG LEU MSE GLY PHE GLY HIS ARG VAL TYR SEQRES 25 A 432 LYS ASN TYR ASP PRO ARG ALA THR VAL MSE ARG GLU THR SEQRES 26 A 432 CYS HIS GLU VAL LEU LYS GLU LEU ASN ILE GLN ASP PRO SEQRES 27 A 432 LEU LEU ASP VAL ALA MSE GLU LEU GLU ARG ILE ALA LEU SEQRES 28 A 432 SER ASP GLU TYR PHE VAL SER LYS LYS LEU TYR PRO ASN SEQRES 29 A 432 VAL ASP PHE TYR SER GLY ILE ILE LEU LYS ALA ILE GLY SEQRES 30 A 432 ILE PRO VAL SER MSE PHE THR VAL ILE PHE ALA ILE SER SEQRES 31 A 432 ARG THR ILE GLY TRP ILE ALA HIS TRP ASN GLU MSE HIS SEQRES 32 A 432 SER ASP PRO LEU ASN ARG ILE GLY ARG PRO ARG GLN LEU SEQRES 33 A 432 TYR THR GLY GLU VAL GLN ARG ASP PHE GLN PRO MSE HIS SEQRES 34 A 432 GLU ARG GLU MODRES 4E6Y MSE A 21 MET SELENOMETHIONINE MODRES 4E6Y MSE A 113 MET SELENOMETHIONINE MODRES 4E6Y MSE A 132 MET SELENOMETHIONINE MODRES 4E6Y MSE A 135 MET SELENOMETHIONINE MODRES 4E6Y MSE A 169 MET SELENOMETHIONINE MODRES 4E6Y MSE A 175 MET SELENOMETHIONINE MODRES 4E6Y MSE A 201 MET SELENOMETHIONINE MODRES 4E6Y MSE A 202 MET SELENOMETHIONINE MODRES 4E6Y MSE A 220 MET SELENOMETHIONINE MODRES 4E6Y MSE A 275 MET SELENOMETHIONINE MODRES 4E6Y MSE A 302 MET SELENOMETHIONINE MODRES 4E6Y MSE A 319 MET SELENOMETHIONINE MODRES 4E6Y MSE A 341 MET SELENOMETHIONINE MODRES 4E6Y MSE A 379 MET SELENOMETHIONINE MODRES 4E6Y MSE A 399 MET SELENOMETHIONINE MODRES 4E6Y MSE A 425 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 113 8 HET MSE A 132 8 HET MSE A 135 8 HET MSE A 169 8 HET MSE A 175 8 HET MSE A 201 8 HET MSE A 202 8 HET MSE A 220 8 HET MSE A 275 8 HET MSE A 302 8 HET MSE A 319 8 HET MSE A 341 8 HET MSE A 379 8 HET MSE A 399 8 HET MSE A 425 8 HET FMT A 501 3 HET FMT A 502 3 HET FMT A 503 3 HET FMT A 504 3 HETNAM MSE SELENOMETHIONINE HETNAM FMT FORMIC ACID FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 FMT 4(C H2 O2) FORMUL 6 HOH *50(H2 O) HELIX 1 1 LEU A 35 GLY A 39 5 5 HELIX 2 2 ASP A 44 LEU A 48 5 5 HELIX 3 3 ILE A 74 ALA A 81 1 8 HELIX 4 4 ASP A 82 GLY A 93 1 12 HELIX 5 5 THR A 97 HIS A 111 1 15 HELIX 6 6 HIS A 115 PHE A 121 1 7 HELIX 7 7 PHE A 122 PHE A 125 5 4 HELIX 8 8 HIS A 130 HIS A 147 1 18 HELIX 9 9 ASP A 148 LEU A 150 5 3 HELIX 10 10 ASN A 154 GLY A 182 1 29 HELIX 11 11 SER A 193 ALA A 204 1 12 HELIX 12 12 ASN A 213 HIS A 227 1 15 HELIX 13 13 ASN A 233 SER A 244 1 12 HELIX 14 14 ASN A 248 GLY A 262 1 15 HELIX 15 15 GLY A 262 GLY A 267 1 6 HELIX 16 16 GLY A 267 GLY A 280 1 14 HELIX 17 17 SER A 281 ASP A 283 5 3 HELIX 18 18 ASN A 284 ASP A 294 1 11 HELIX 19 19 ASP A 313 ASN A 331 1 19 HELIX 20 20 ASP A 334 LEU A 348 1 15 HELIX 21 21 ASP A 350 LYS A 356 1 7 HELIX 22 22 ASN A 361 ILE A 373 1 13 HELIX 23 23 PRO A 376 SER A 378 5 3 HELIX 24 24 MSE A 379 ASP A 402 1 24 HELIX 25 25 PRO A 424 ARG A 428 5 5 SHEET 1 A 3 LYS A 5 LEU A 8 0 SHEET 2 A 3 ILE A 16 MSE A 21 -1 O LEU A 18 N ALA A 6 SHEET 3 A 3 VAL A 29 ILE A 30 -1 O VAL A 29 N MSE A 21 SHEET 1 B 3 THR A 58 ASP A 61 0 SHEET 2 B 3 ILE A 66 HIS A 69 -1 O LEU A 68 N TYR A 59 SHEET 3 B 3 TYR A 72 PRO A 73 -1 O TYR A 72 N HIS A 69 LINK C ILE A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N GLU A 22 1555 1555 1.32 LINK C THR A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N VAL A 114 1555 1555 1.32 LINK C PRO A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N ALA A 133 1555 1555 1.35 LINK C VAL A 134 N MSE A 135 1555 1555 1.32 LINK C MSE A 135 N CYS A 136 1555 1555 1.34 LINK C LYS A 168 N MSE A 169 1555 1555 1.32 LINK C MSE A 169 N PRO A 170 1555 1555 1.34 LINK C ALA A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N CYS A 176 1555 1555 1.33 LINK C HIS A 200 N MSE A 201 1555 1555 1.33 LINK C MSE A 201 N MSE A 202 1555 1555 1.32 LINK C MSE A 202 N PHE A 203 1555 1555 1.35 LINK C ALA A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N ASP A 221 1555 1555 1.32 LINK C LYS A 274 N MSE A 275 1555 1555 1.32 LINK C MSE A 275 N LEU A 276 1555 1555 1.32 LINK C LEU A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N GLY A 303 1555 1555 1.34 LINK C VAL A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N ARG A 320 1555 1555 1.33 LINK C ALA A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N GLU A 342 1555 1555 1.33 LINK C SER A 378 N MSE A 379 1555 1555 1.32 LINK C MSE A 379 N PHE A 380 1555 1555 1.33 LINK C GLU A 398 N MSE A 399 1555 1555 1.33 LINK C MSE A 399 N HIS A 400 1555 1555 1.32 LINK C PRO A 424 N MSE A 425 1555 1555 1.33 LINK C MSE A 425 N HIS A 426 1555 1555 1.32 SITE 1 AC1 3 GLN A 56 GLU A 398 ASP A 402 SITE 1 AC2 3 GLU A 85 MSE A 425 HOH A 645 SITE 1 AC3 4 GLU A 116 HIS A 123 ARG A 127 GLN A 183 SITE 1 AC4 1 SER A 193 CRYST1 109.717 109.717 153.649 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009114 0.005262 0.000000 0.00000 SCALE2 0.000000 0.010524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006508 0.00000 MASTER 441 0 20 25 6 0 4 6 0 0 0 34 END