HEADER HYDROLASE 09-FEB-12 4DOG TITLE STRUCTURES OF VACCINIA VIRUS URACIL-DNA GLYCOSYLASE IN NEW CRYSTAL TITLE 2 FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS WESTERN RESERVE; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 696871; SOURCE 5 GENE: D4R, VACWR109; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DNA BINDING COMPONENT, VIRAL PROCESSIVITY FACTOR, HYDROLASE, KEYWDS 2 GLYCOSIDASE, DNA REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,D.CHATTOPADHYAY REVDAT 2 29-JUN-16 4DOG 1 SOURCE REVDAT 1 20-FEB-13 4DOG 0 JRNL AUTH N.SCHORMANN,C.I.SOMMERS,R.P.RICCIARDI,D.CHATTOPADHYAY JRNL TITL ANALYSIS OF THE DIMER INTERFACE IN CRYSTAL STRUCTURES OF JRNL TITL 2 VACCINIA VIRUS URACIL DNA GLYCOSYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 11016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.35000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : 2.02000 REMARK 3 B12 (A**2) : -0.67000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.378 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1797 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2442 ; 1.139 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 5.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;34.496 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;15.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1350 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1775 -16.6995 -22.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.3374 T22: 0.8160 REMARK 3 T33: 0.3130 T12: -0.0923 REMARK 3 T13: -0.0516 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 5.1073 L22: 4.7537 REMARK 3 L33: 3.9573 L12: -2.4258 REMARK 3 L13: -1.3385 L23: -2.4780 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.7813 S13: 0.2526 REMARK 3 S21: -0.5594 S22: 0.0099 S23: 0.0481 REMARK 3 S31: 0.3811 S32: 0.1181 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4713 -16.5871 -12.7572 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.4136 REMARK 3 T33: 0.1127 T12: -0.0287 REMARK 3 T13: -0.0359 T23: -0.1621 REMARK 3 L TENSOR REMARK 3 L11: 6.1043 L22: 1.9488 REMARK 3 L33: 2.3853 L12: -0.3161 REMARK 3 L13: -1.7942 L23: 0.1082 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: 0.0696 S13: -0.1059 REMARK 3 S21: -0.2868 S22: 0.1730 S23: -0.0537 REMARK 3 S31: 0.2862 S32: 0.2375 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8092 -15.3145 -6.2055 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.3940 REMARK 3 T33: 0.1401 T12: -0.0269 REMARK 3 T13: -0.0595 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 6.1265 L22: 1.8607 REMARK 3 L33: 1.9427 L12: -0.2698 REMARK 3 L13: -1.3939 L23: 0.2127 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: -0.3495 S13: -0.0297 REMARK 3 S21: -0.0671 S22: 0.2429 S23: 0.1531 REMARK 3 S31: 0.2256 S32: 0.0704 S33: -0.0774 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5746 -8.2293 1.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.5248 REMARK 3 T33: 0.3990 T12: -0.0072 REMARK 3 T13: -0.0623 T23: -0.2839 REMARK 3 L TENSOR REMARK 3 L11: 11.5066 L22: 1.5668 REMARK 3 L33: 5.4418 L12: 0.9720 REMARK 3 L13: -1.4852 L23: -1.5533 REMARK 3 S TENSOR REMARK 3 S11: 0.2160 S12: -1.3856 S13: 0.8513 REMARK 3 S21: 0.0813 S22: 0.1568 S23: 0.2134 REMARK 3 S31: 0.0560 S32: 0.3156 S33: -0.3728 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4367 -7.6164 -12.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.5036 REMARK 3 T33: 0.4630 T12: -0.0790 REMARK 3 T13: -0.1012 T23: 0.1208 REMARK 3 L TENSOR REMARK 3 L11: 8.7154 L22: 12.7841 REMARK 3 L33: 3.5175 L12: 3.0386 REMARK 3 L13: -1.3005 L23: -1.5567 REMARK 3 S TENSOR REMARK 3 S11: 0.0730 S12: 1.0754 S13: 1.1506 REMARK 3 S21: -0.3158 S22: 0.2371 S23: 0.5993 REMARK 3 S31: -0.1569 S32: -0.5951 S33: -0.3101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OWQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 10% GLYCEROL, REMARK 280 0.1M HEPES, 10MM NICKEL SULFATE, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.30667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.15333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.30667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.15333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.30667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.15333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.30667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 165 REMARK 465 ILE A 166 REMARK 465 ARG A 167 REMARK 465 ALA A 168 REMARK 465 LYS A 169 REMARK 465 LEU A 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 14.24 -143.14 REMARK 500 TYR A 11 -34.71 70.59 REMARK 500 PHE A 79 -11.58 68.83 REMARK 500 ASP A 138 -80.37 -14.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OWR RELATED DB: PDB REMARK 900 THE STRUCTURE OF WTD4 WITH N-TERMINAL HIS-TAG CLEAVED IN REMARK 900 ORTHORHOMBIC SPACE GROUP REMARK 900 RELATED ID: 4DOF RELATED DB: PDB DBREF 4DOG A 1 218 UNP Q91UM2 UNG_VACCA 1 218 SEQADV 4DOG GLY A -2 UNP Q91UM2 EXPRESSION TAG SEQADV 4DOG SER A -1 UNP Q91UM2 EXPRESSION TAG SEQADV 4DOG HIS A 0 UNP Q91UM2 EXPRESSION TAG SEQADV 4DOG ASN A 17 UNP Q91UM2 ASP 17 ENGINEERED MUTATION SEQRES 1 A 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 A 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 A 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 A 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 A 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 A 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 A 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 A 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 A 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 A 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 A 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 A 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 A 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 A 221 ARG ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 A 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 A 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 A 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR HET SO4 A 301 5 HET EDO A 302 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 O4 S 2- FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *24(H2 O) HELIX 1 1 TRP A 19 ARG A 39 1 21 HELIX 2 2 ILE A 45 PHE A 49 5 5 HELIX 3 3 PHE A 50 GLN A 55 5 6 HELIX 4 4 LYS A 86 GLY A 101 1 16 HELIX 5 5 LEU A 110 ILE A 113 5 4 HELIX 6 6 HIS A 133 THR A 149 1 17 HELIX 7 7 ARG A 187 ASP A 205 1 19 HELIX 8 8 ASN A 211 GLN A 214 5 4 SHEET 1 A 2 MET A 1 THR A 5 0 SHEET 2 A 2 THR A 12 HIS A 16 -1 O TYR A 15 N ASN A 2 SHEET 1 B 2 THR A 42 SER A 43 0 SHEET 2 B 2 CYS A 125 LYS A 126 -1 O CYS A 125 N SER A 43 SHEET 1 C 4 VAL A 116 ASN A 120 0 SHEET 2 C 4 VAL A 62 GLY A 66 1 N VAL A 64 O TRP A 119 SHEET 3 C 4 VAL A 154 LEU A 158 1 O TYR A 156 N CYS A 63 SHEET 4 C 4 THR A 175 GLY A 179 1 O ILE A 177 N LEU A 155 SHEET 1 D 2 GLY A 107 TYR A 108 0 SHEET 2 D 2 PHE A 216 ILE A 217 -1 O ILE A 217 N GLY A 107 CISPEP 1 ALA A 9 PRO A 10 0 5.20 CISPEP 2 SER A 43 PRO A 44 0 -2.71 SITE 1 AC1 5 GLY A 159 LYS A 160 THR A 161 TYR A 180 SITE 2 AC1 5 HIS A 181 SITE 1 AC2 6 GLY A 66 ASP A 68 TYR A 70 PHE A 79 SITE 2 AC2 6 ASN A 120 HOH A 418 CRYST1 85.790 85.790 123.460 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011656 0.006730 0.000000 0.00000 SCALE2 0.000000 0.013460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008100 0.00000 MASTER 413 0 2 8 10 0 4 6 0 0 0 17 END