HEADER TRANSCRIPTION/PEPTIDE/AGONIST 03-FEB-12 4DK7 TITLE CRYSTAL STRUCTURE OF LXR LIGAND BINDING DOMAIN IN COMPLEX WITH FULL TITLE 2 AGONIST 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROLS RECEPTOR LXR-BETA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 218-460; COMPND 5 SYNONYM: LIVER X RECEPTOR BETA, NUCLEAR RECEPTOR NER, NUCLEAR COMPND 6 RECEPTOR SUBFAMILY 1 GROUP H MEMBER 2, UBIQUITOUSLY-EXPRESSED NUCLEAR COMPND 7 RECEPTOR; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: UNP RESIDUES 745-756; COMPND 13 SYNONYM: NCOA-1, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74, BHLHE74, COMPND 14 PROTEIN HIN-2, RIP160, RENAL CARCINOMA ANTIGEN NY-REN-52, STEROID COMPND 15 RECEPTOR COACTIVATOR 1, SRC-1; COMPND 16 EC: 2.3.1.48; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H2, LXRB, NER, UNR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS LIGAND BINDING DOMAIN, NUCLEAR HORMONE RECEPTOR, TRANSCRIPTION- KEYWDS 2 PEPTIDE-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.E.PIPER,H.XU REVDAT 2 09-MAY-12 4DK7 1 JRNL REVDAT 1 21-MAR-12 4DK7 0 JRNL AUTH D.J.KOPECKY,X.Y.JIAO,B.FISHER,S.MCKENDRY,M.LABELLE, JRNL AUTH 2 D.E.PIPER,P.COWARD,A.K.SHIAU,P.ESCARON,J.DANAO,A.CHAI, JRNL AUTH 3 J.JAEN,F.KAYSER JRNL TITL DISCOVERY OF A NEW BINDING MODE FOR A SERIES OF LIVER X JRNL TITL 2 RECEPTOR AGONISTS. JRNL REF BIOORG.MED.CHEM.LETT. V. 22 2407 2012 JRNL REFN ISSN 0960-894X JRNL PMID 22406115 JRNL DOI 10.1016/J.BMCL.2012.02.028 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8, 12% PEG 10000, 0.2 M REMARK 280 CALCIUM ACETATE, 0.005 M DTT, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.85450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.63050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.63050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.28175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.63050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.63050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.42725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.63050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.63050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.28175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.63050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.63050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.42725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.85450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 507 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 506 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 215 REMARK 465 SER A 216 REMARK 465 ASP A 245 REMARK 465 GLN A 246 REMARK 465 PRO A 247 REMARK 465 GLY A 255 REMARK 465 ALA A 256 REMARK 465 ASP A 257 REMARK 465 PRO A 258 REMARK 465 GLN A 259 REMARK 465 HIS A 460 REMARK 465 GLU A 461 REMARK 465 GLY C 215 REMARK 465 SER C 216 REMARK 465 HIS C 217 REMARK 465 MSE C 218 REMARK 465 SER C 242 REMARK 465 PHE C 243 REMARK 465 SER C 244 REMARK 465 ASP C 245 REMARK 465 GLN C 246 REMARK 465 GLY C 255 REMARK 465 ALA C 256 REMARK 465 ASP C 257 REMARK 465 PRO C 258 REMARK 465 GLN C 259 REMARK 465 SER C 260 REMARK 465 ARG C 261 REMARK 465 HIS C 460 REMARK 465 GLU C 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 330 -93.55 -116.51 REMARK 500 LYS A 331 -55.81 -129.56 REMARK 500 PHE A 379 58.02 -90.36 REMARK 500 GLU A 388 77.28 -118.44 REMARK 500 LEU A 444 -3.09 -52.09 REMARK 500 ASP A 446 -0.30 77.44 REMARK 500 THR C 250 105.48 -54.25 REMARK 500 GLU C 325 33.53 70.24 REMARK 500 LEU C 330 -75.81 -103.16 REMARK 500 GLN C 445 20.75 -70.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 325 OE2 REMARK 620 2 GLU A 325 OE1 47.5 REMARK 620 3 ACT A 502 O 117.3 75.5 REMARK 620 4 ACT A 502 OXT 88.2 67.9 41.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 334 O REMARK 620 2 ASP C 339 OD1 72.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KS C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DK8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LXR LIGAND BINDING DOMAIN IN COMPLEX REMARK 900 WITH PARTIAL AGONIST 5 DBREF 4DK7 A 219 461 UNP P55055 NR1H2_HUMAN 218 460 DBREF 4DK7 B 365 376 UNP Q15788 NCOA1_HUMAN 745 756 DBREF 4DK7 C 219 461 UNP P55055 NR1H2_HUMAN 218 460 DBREF 4DK7 D 365 376 UNP Q15788 NCOA1_HUMAN 745 756 SEQADV 4DK7 GLY A 215 UNP P55055 EXPRESSION TAG SEQADV 4DK7 SER A 216 UNP P55055 EXPRESSION TAG SEQADV 4DK7 HIS A 217 UNP P55055 EXPRESSION TAG SEQADV 4DK7 MSE A 218 UNP P55055 EXPRESSION TAG SEQADV 4DK7 GLY C 215 UNP P55055 EXPRESSION TAG SEQADV 4DK7 SER C 216 UNP P55055 EXPRESSION TAG SEQADV 4DK7 HIS C 217 UNP P55055 EXPRESSION TAG SEQADV 4DK7 MSE C 218 UNP P55055 EXPRESSION TAG SEQRES 1 A 247 GLY SER HIS MSE GLN LEU THR ALA ALA GLN GLU LEU MSE SEQRES 2 A 247 ILE GLN GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS SEQRES 3 A 247 ARG SER PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO SEQRES 4 A 247 LEU GLY ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN SEQRES 5 A 247 ARG PHE ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL SEQRES 6 A 247 GLN GLU ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE SEQRES 7 A 247 LEU GLN LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS SEQRES 8 A 247 ALA SER THR ILE GLU ILE MSE LEU LEU GLU THR ALA ARG SEQRES 9 A 247 ARG TYR ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS SEQRES 10 A 247 ASP PHE THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY SEQRES 11 A 247 LEU GLN VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER SEQRES 12 A 247 ARG ALA MSE ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR SEQRES 13 A 247 ALA LEU LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG SEQRES 14 A 247 PRO ASN VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN SEQRES 15 A 247 GLN PRO TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE SEQRES 16 A 247 LYS ARG PRO GLN ASP GLN LEU ARG PHE PRO ARG MSE LEU SEQRES 17 A 247 MSE LYS LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SEQRES 18 A 247 SER GLU GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS SEQRES 19 A 247 LEU PRO PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 B 12 ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 1 C 247 GLY SER HIS MSE GLN LEU THR ALA ALA GLN GLU LEU MSE SEQRES 2 C 247 ILE GLN GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS SEQRES 3 C 247 ARG SER PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO SEQRES 4 C 247 LEU GLY ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN SEQRES 5 C 247 ARG PHE ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL SEQRES 6 C 247 GLN GLU ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE SEQRES 7 C 247 LEU GLN LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS SEQRES 8 C 247 ALA SER THR ILE GLU ILE MSE LEU LEU GLU THR ALA ARG SEQRES 9 C 247 ARG TYR ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS SEQRES 10 C 247 ASP PHE THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY SEQRES 11 C 247 LEU GLN VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER SEQRES 12 C 247 ARG ALA MSE ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR SEQRES 13 C 247 ALA LEU LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG SEQRES 14 C 247 PRO ASN VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN SEQRES 15 C 247 GLN PRO TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE SEQRES 16 C 247 LYS ARG PRO GLN ASP GLN LEU ARG PHE PRO ARG MSE LEU SEQRES 17 C 247 MSE LYS LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SEQRES 18 C 247 SER GLU GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS SEQRES 19 C 247 LEU PRO PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 D 12 ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP MODRES 4DK7 MSE A 218 MET SELENOMETHIONINE MODRES 4DK7 MSE A 227 MET SELENOMETHIONINE MODRES 4DK7 MSE A 312 MET SELENOMETHIONINE MODRES 4DK7 MSE A 360 MET SELENOMETHIONINE MODRES 4DK7 MSE A 421 MET SELENOMETHIONINE MODRES 4DK7 MSE A 423 MET SELENOMETHIONINE MODRES 4DK7 MSE C 227 MET SELENOMETHIONINE MODRES 4DK7 MSE C 312 MET SELENOMETHIONINE MODRES 4DK7 MSE C 360 MET SELENOMETHIONINE MODRES 4DK7 MSE C 421 MET SELENOMETHIONINE MODRES 4DK7 MSE C 423 MET SELENOMETHIONINE HET MSE A 218 8 HET MSE A 227 8 HET MSE A 312 8 HET MSE A 360 8 HET MSE A 421 8 HET MSE A 423 8 HET MSE C 227 8 HET MSE C 312 8 HET MSE C 360 8 HET MSE C 421 8 HET MSE C 423 8 HET 0KS A 501 27 HET ACT A 502 4 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET 0KS C 501 27 HET CA C 502 1 HET CA C 503 1 HETNAM MSE SELENOMETHIONINE HETNAM 0KS N-[4-(1,1,1,3,3,3-HEXAFLUORO-2-HYDROXYPROPAN-2-YL) HETNAM 2 0KS PHENYL]-N-METHYLBENZENESULFONAMIDE HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 5 0KS 2(C16 H13 F6 N O3 S) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 CA 7(CA 2+) FORMUL 15 HOH *106(H2 O) HELIX 1 1 THR A 221 SER A 244 1 24 HELIX 2 2 ARG A 261 VAL A 289 1 29 HELIX 3 3 GLY A 296 ARG A 318 1 23 HELIX 4 4 SER A 336 ARG A 342 1 7 HELIX 5 5 GLN A 346 GLY A 364 1 19 HELIX 6 6 ASP A 366 PHE A 379 1 14 HELIX 7 7 GLU A 388 ARG A 411 1 24 HELIX 8 8 LEU A 416 LEU A 444 1 29 HELIX 9 9 PRO A 450 ASP A 458 1 9 HELIX 10 10 HIS B 366 LYS B 375 1 10 HELIX 11 11 THR C 221 ARG C 241 1 21 HELIX 12 12 ALA C 263 LYS C 287 1 25 HELIX 13 13 GLY C 291 LEU C 295 5 5 HELIX 14 14 GLY C 296 ARG C 319 1 24 HELIX 15 15 ASP C 338 GLY C 344 1 7 HELIX 16 16 GLN C 346 GLY C 364 1 19 HELIX 17 17 ASP C 366 PHE C 379 1 14 HELIX 18 18 GLU C 388 ARG C 411 1 24 HELIX 19 19 LEU C 416 GLN C 445 1 30 HELIX 20 20 PRO C 450 ASP C 458 1 9 HELIX 21 21 HIS D 366 LYS D 375 1 10 SHEET 1 A 3 TYR A 320 ASN A 321 0 SHEET 2 A 3 CYS A 326 THR A 328 -1 O CYS A 326 N ASN A 321 SHEET 3 A 3 THR A 334 TYR A 335 -1 O TYR A 335 N ILE A 327 SHEET 1 B 3 TYR C 320 ASN C 321 0 SHEET 2 B 3 CYS C 326 THR C 328 -1 O CYS C 326 N ASN C 321 SHEET 3 B 3 THR C 334 SER C 336 -1 O TYR C 335 N ILE C 327 LINK C HIS A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N GLN A 219 1555 1555 1.33 LINK C LEU A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N ILE A 228 1555 1555 1.33 LINK C ILE A 311 N MSE A 312 1555 1555 1.33 LINK C MSE A 312 N LEU A 313 1555 1555 1.33 LINK C ALA A 359 N MSE A 360 1555 1555 1.33 LINK C MSE A 360 N ARG A 361 1555 1555 1.34 LINK C ARG A 420 N MSE A 421 1555 1555 1.33 LINK C MSE A 421 N LEU A 422 1555 1555 1.33 LINK C LEU A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N LYS A 424 1555 1555 1.33 LINK C LEU C 226 N MSE C 227 1555 1555 1.33 LINK C MSE C 227 N ILE C 228 1555 1555 1.33 LINK C ILE C 311 N MSE C 312 1555 1555 1.33 LINK C MSE C 312 N LEU C 313 1555 1555 1.33 LINK C ALA C 359 N MSE C 360 1555 1555 1.32 LINK C MSE C 360 N ARG C 361 1555 1555 1.33 LINK C ARG C 420 N MSE C 421 1555 1555 1.33 LINK C MSE C 421 N LEU C 422 1555 1555 1.33 LINK C LEU C 422 N MSE C 423 1555 1555 1.33 LINK C MSE C 423 N LYS C 424 1555 1555 1.33 LINK OE2 GLU A 325 CA CA A 505 1555 1555 2.73 LINK OE1 GLU A 325 CA CA A 505 1555 1555 2.76 LINK O THR C 334 CA CA C 503 1555 1555 3.09 LINK O ACT A 502 CA CA A 505 1555 1555 3.12 LINK OXT ACT A 502 CA CA A 505 1555 1555 3.13 LINK OD2 ASP A 339 CA CA A 506 1555 1555 3.19 LINK OD1 ASP C 339 CA CA C 503 1555 1555 3.20 SITE 1 AC1 15 THR A 272 ALA A 275 SER A 278 LEU A 313 SITE 2 AC1 15 THR A 316 PHE A 329 PHE A 340 LEU A 345 SITE 3 AC1 15 PHE A 349 HIS A 435 GLN A 438 LEU A 442 SITE 4 AC1 15 LEU A 449 LEU A 453 TRP A 457 SITE 1 AC2 5 GLU A 325 LYS A 337 ARG A 358 CA A 505 SITE 2 AC2 5 HOH A 643 SITE 1 AC3 2 GLN A 235 GLU A 281 SITE 1 AC4 1 THR A 334 SITE 1 AC5 2 GLU A 325 ACT A 502 SITE 1 AC6 1 ASP A 339 SITE 1 AC7 16 THR C 272 LEU C 274 ALA C 275 SER C 278 SITE 2 AC7 16 MSE C 312 LEU C 313 THR C 316 PHE C 329 SITE 3 AC7 16 PHE C 340 LEU C 345 HIS C 435 GLN C 438 SITE 4 AC7 16 VAL C 439 LEU C 442 TRP C 457 HOH C 637 SITE 1 AC8 2 THR C 334 ASP C 339 CRYST1 87.261 87.261 197.709 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005058 0.00000 MASTER 361 0 21 21 6 0 15 6 0 0 0 40 END