HEADER HYDROLASE 11-JAN-12 4DI8 TITLE CRYSTAL STRUCTURE OF THE D248A MUTANT OF 2-PYRONE-4,6-DICARBOXYLIC TITLE 2 ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXED WITH TITLE 3 SUBSTRATE AT PH 8.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-PYRONE-4,6-DICARBAXYLATE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 STRAIN: SYK-6; SOURCE 5 GENE: LIGI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,M.E.HOBBS,F.M.RAUSHEL,S.C.ALMO REVDAT 5 10-FEB-21 4DI8 1 JRNL REMARK SEQADV LINK REVDAT 4 20-FEB-13 4DI8 1 JRNL REVDAT 3 23-JAN-13 4DI8 1 JRNL REVDAT 2 09-JAN-13 4DI8 1 JRNL REVDAT 1 03-OCT-12 4DI8 0 SPRSDE 03-OCT-12 4DI8 4D95 JRNL AUTH M.E.HOBBS,V.MALASHKEVICH,H.J.WILLIAMS,C.XU,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO,F.M.RAUSHEL JRNL TITL STRUCTURE AND CATALYTIC MECHANISM OF LIGI: INSIGHT INTO THE JRNL TITL 2 AMIDOHYDROLASE ENZYMES OF COG3618 AND LIGNIN DEGRADATION. JRNL REF BIOCHEMISTRY V. 51 3497 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22475079 JRNL DOI 10.1021/BI300307B REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2718 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 675 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4868 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6648 ; 1.231 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;33.434 ;23.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;12.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3894 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2989 ; 0.681 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4836 ; 2.278 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 4.844 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1805 ; 0.885 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3281 11.2779 0.0848 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.0222 REMARK 3 T33: 0.0185 T12: 0.0012 REMARK 3 T13: 0.0050 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.8560 L22: 0.6459 REMARK 3 L33: 0.6230 L12: 0.0114 REMARK 3 L13: 0.0764 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0513 S13: -0.0133 REMARK 3 S21: -0.0056 S22: -0.0364 S23: 0.0874 REMARK 3 S31: -0.0169 S32: -0.0951 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8515 -13.4698 -37.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0210 REMARK 3 T33: 0.0099 T12: 0.0012 REMARK 3 T13: -0.0017 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.7422 L22: 0.6580 REMARK 3 L33: 0.4235 L12: -0.1104 REMARK 3 L13: -0.0160 L23: -0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0216 S13: -0.0095 REMARK 3 S21: -0.0587 S22: -0.0355 S23: 0.0686 REMARK 3 S31: 0.0005 S32: -0.0833 S33: 0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED. HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 4DI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1 M TRIS HCL PH 8.5, REMARK 280 0.2 M NA-ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.06550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 1 REMARK 465 GLU B 296 REMARK 465 GLY B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 214 57.16 71.26 REMARK 500 PRO A 250 30.02 -93.05 REMARK 500 VAL A 283 -69.31 -121.07 REMARK 500 CYS B 214 57.33 73.11 REMARK 500 VAL B 283 -72.92 -122.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 591 O REMARK 620 2 HOH B 688 O 93.9 REMARK 620 3 HOH B 701 O 84.2 176.9 REMARK 620 4 HOH B 741 O 97.1 101.6 81.1 REMARK 620 5 HOH B 759 O 173.7 85.8 95.8 89.1 REMARK 620 6 HOH B 783 O 103.4 113.2 65.0 137.8 71.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 630 O REMARK 620 2 HOH B 674 O 99.9 REMARK 620 3 HOH B 719 O 172.2 82.5 REMARK 620 4 HOH B 737 O 80.2 176.8 97.8 REMARK 620 5 HOH B 781 O 89.8 86.7 97.8 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GZ B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0GY B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QAH RELATED DB: PDB REMARK 900 RELATED ID: 4D8L RELATED DB: PDB REMARK 900 RELATED ID: 4DI9 RELATED DB: PDB REMARK 900 RELATED ID: 4DIA RELATED DB: PDB DBREF 4DI8 A 4 295 UNP O87170 O87170_PSEPA 2 293 DBREF 4DI8 B 4 295 UNP O87170 O87170_PSEPA 2 293 SEQADV 4DI8 MET A 1 UNP O87170 EXPRESSION TAG SEQADV 4DI8 SER A 2 UNP O87170 EXPRESSION TAG SEQADV 4DI8 LEU A 3 UNP O87170 EXPRESSION TAG SEQADV 4DI8 ALA A 248 UNP O87170 ASP 246 ENGINEERED MUTATION SEQADV 4DI8 GLU A 296 UNP O87170 EXPRESSION TAG SEQADV 4DI8 GLY A 297 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS A 298 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS A 299 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS A 300 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS A 301 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS A 302 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS A 303 UNP O87170 EXPRESSION TAG SEQADV 4DI8 MET B 1 UNP O87170 EXPRESSION TAG SEQADV 4DI8 SER B 2 UNP O87170 EXPRESSION TAG SEQADV 4DI8 LEU B 3 UNP O87170 EXPRESSION TAG SEQADV 4DI8 ALA B 248 UNP O87170 ASP 246 ENGINEERED MUTATION SEQADV 4DI8 GLU B 296 UNP O87170 EXPRESSION TAG SEQADV 4DI8 GLY B 297 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS B 298 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS B 299 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS B 300 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS B 301 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS B 302 UNP O87170 EXPRESSION TAG SEQADV 4DI8 HIS B 303 UNP O87170 EXPRESSION TAG SEQRES 1 A 303 MET SER LEU THR ASN ASP GLU ARG ILE LEU SER TRP ASN SEQRES 2 A 303 GLU THR PRO SER LYS PRO ARG TYR THR PRO PRO PRO GLY SEQRES 3 A 303 ALA ILE ASP ALA HIS CYS HIS VAL PHE GLY PRO MET ALA SEQRES 4 A 303 GLN PHE PRO PHE SER PRO LYS ALA LYS TYR LEU PRO ARG SEQRES 5 A 303 ASP ALA GLY PRO ASP MET LEU PHE ALA LEU ARG ASP HIS SEQRES 6 A 303 LEU GLY PHE ALA ARG ASN VAL ILE VAL GLN ALA SER CYS SEQRES 7 A 303 HIS GLY THR ASP ASN ALA ALA THR LEU ASP ALA ILE ALA SEQRES 8 A 303 ARG ALA GLN GLY LYS ALA ARG GLY ILE ALA VAL VAL ASP SEQRES 9 A 303 PRO ALA ILE ASP GLU ALA GLU LEU ALA ALA LEU HIS GLU SEQRES 10 A 303 GLY GLY MET ARG GLY ILE ARG PHE ASN PHE LEU LYS ARG SEQRES 11 A 303 LEU VAL ASP ASP ALA PRO LYS ASP LYS PHE LEU GLU VAL SEQRES 12 A 303 ALA GLY ARG LEU PRO ALA GLY TRP HIS VAL VAL ILE TYR SEQRES 13 A 303 PHE GLU ALA ASP ILE LEU GLU GLU LEU ARG PRO PHE MET SEQRES 14 A 303 ASP ALA ILE PRO VAL PRO ILE VAL ILE ASP HIS MET GLY SEQRES 15 A 303 ARG PRO ASP VAL ARG GLN GLY PRO ASP GLY ALA ASP MET SEQRES 16 A 303 LYS ALA PHE ARG ARG LEU LEU ASP SER ARG GLU ASP ILE SEQRES 17 A 303 TRP PHE LYS ALA THR CYS PRO ASP ARG LEU ASP PRO ALA SEQRES 18 A 303 GLY PRO PRO TRP ASP ASP PHE ALA ARG SER VAL ALA PRO SEQRES 19 A 303 LEU VAL ALA ASP TYR ALA ASP ARG VAL ILE TRP GLY THR SEQRES 20 A 303 ALA TRP PRO HIS PRO ASN MET GLN ASP ALA ILE PRO ASP SEQRES 21 A 303 ASP GLY LEU VAL VAL ASP MET ILE PRO ARG ILE ALA PRO SEQRES 22 A 303 THR PRO GLU LEU GLN HIS LYS MET LEU VAL THR ASN PRO SEQRES 23 A 303 MET ARG LEU TYR TRP SER GLU GLU MET GLU GLY HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET SER LEU THR ASN ASP GLU ARG ILE LEU SER TRP ASN SEQRES 2 B 303 GLU THR PRO SER LYS PRO ARG TYR THR PRO PRO PRO GLY SEQRES 3 B 303 ALA ILE ASP ALA HIS CYS HIS VAL PHE GLY PRO MET ALA SEQRES 4 B 303 GLN PHE PRO PHE SER PRO LYS ALA LYS TYR LEU PRO ARG SEQRES 5 B 303 ASP ALA GLY PRO ASP MET LEU PHE ALA LEU ARG ASP HIS SEQRES 6 B 303 LEU GLY PHE ALA ARG ASN VAL ILE VAL GLN ALA SER CYS SEQRES 7 B 303 HIS GLY THR ASP ASN ALA ALA THR LEU ASP ALA ILE ALA SEQRES 8 B 303 ARG ALA GLN GLY LYS ALA ARG GLY ILE ALA VAL VAL ASP SEQRES 9 B 303 PRO ALA ILE ASP GLU ALA GLU LEU ALA ALA LEU HIS GLU SEQRES 10 B 303 GLY GLY MET ARG GLY ILE ARG PHE ASN PHE LEU LYS ARG SEQRES 11 B 303 LEU VAL ASP ASP ALA PRO LYS ASP LYS PHE LEU GLU VAL SEQRES 12 B 303 ALA GLY ARG LEU PRO ALA GLY TRP HIS VAL VAL ILE TYR SEQRES 13 B 303 PHE GLU ALA ASP ILE LEU GLU GLU LEU ARG PRO PHE MET SEQRES 14 B 303 ASP ALA ILE PRO VAL PRO ILE VAL ILE ASP HIS MET GLY SEQRES 15 B 303 ARG PRO ASP VAL ARG GLN GLY PRO ASP GLY ALA ASP MET SEQRES 16 B 303 LYS ALA PHE ARG ARG LEU LEU ASP SER ARG GLU ASP ILE SEQRES 17 B 303 TRP PHE LYS ALA THR CYS PRO ASP ARG LEU ASP PRO ALA SEQRES 18 B 303 GLY PRO PRO TRP ASP ASP PHE ALA ARG SER VAL ALA PRO SEQRES 19 B 303 LEU VAL ALA ASP TYR ALA ASP ARG VAL ILE TRP GLY THR SEQRES 20 B 303 ALA TRP PRO HIS PRO ASN MET GLN ASP ALA ILE PRO ASP SEQRES 21 B 303 ASP GLY LEU VAL VAL ASP MET ILE PRO ARG ILE ALA PRO SEQRES 22 B 303 THR PRO GLU LEU GLN HIS LYS MET LEU VAL THR ASN PRO SEQRES 23 B 303 MET ARG LEU TYR TRP SER GLU GLU MET GLU GLY HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET 0GZ A 401 13 HET ACT A 402 4 HET 0GY A 403 14 HET 0GZ B 401 13 HET ACT B 402 4 HET MG B 403 1 HET MG B 404 1 HET 0GY B 405 14 HETNAM 0GZ 2-OXO-2H-PYRAN-4,6-DICARBOXYLIC ACID HETNAM ACT ACETATE ION HETNAM 0GY (1E,3Z)-4-HYDROXYBUTA-1,3-DIENE-1,2,4-TRICARBOXYLIC HETNAM 2 0GY ACID HETNAM MG MAGNESIUM ION FORMUL 3 0GZ 2(C7 H4 O6) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 0GY 2(C7 H6 O7) FORMUL 8 MG 2(MG 2+) FORMUL 11 HOH *675(H2 O) HELIX 1 1 GLY A 55 GLY A 67 1 13 HELIX 2 2 ALA A 76 GLY A 80 5 5 HELIX 3 3 ASN A 83 ALA A 93 1 11 HELIX 4 4 ASP A 108 GLY A 118 1 11 HELIX 5 5 PRO A 136 GLY A 145 1 10 HELIX 6 6 GLU A 158 ASP A 160 5 3 HELIX 7 7 ILE A 161 ILE A 172 1 12 HELIX 8 8 HIS A 180 ARG A 183 5 4 HELIX 9 9 ASP A 185 GLY A 189 5 5 HELIX 10 10 GLY A 192 ASP A 203 1 12 HELIX 11 11 CYS A 214 ASP A 219 1 6 HELIX 12 12 TRP A 225 TYR A 239 1 15 HELIX 13 13 ASP A 260 MET A 267 1 8 HELIX 14 14 MET A 267 ALA A 272 1 6 HELIX 15 15 THR A 274 VAL A 283 1 10 HELIX 16 16 VAL A 283 TRP A 291 1 9 HELIX 17 17 SER A 292 MET A 295 5 4 HELIX 18 18 GLY B 55 GLY B 67 1 13 HELIX 19 19 ALA B 76 GLY B 80 5 5 HELIX 20 20 ASN B 83 ALA B 93 1 11 HELIX 21 21 ASP B 108 GLY B 118 1 11 HELIX 22 22 PRO B 136 GLY B 145 1 10 HELIX 23 23 GLU B 158 ASP B 160 5 3 HELIX 24 24 ILE B 161 ILE B 172 1 12 HELIX 25 25 HIS B 180 ARG B 183 5 4 HELIX 26 26 ASP B 185 GLY B 189 5 5 HELIX 27 27 GLY B 192 ASP B 203 1 12 HELIX 28 28 CYS B 214 ASP B 219 1 6 HELIX 29 29 TRP B 225 TYR B 239 1 15 HELIX 30 30 ASP B 260 MET B 267 1 8 HELIX 31 31 MET B 267 ALA B 272 1 6 HELIX 32 32 THR B 274 VAL B 283 1 10 HELIX 33 33 VAL B 283 TRP B 291 1 9 HELIX 34 34 SER B 292 MET B 295 5 4 SHEET 1 A 8 ILE A 28 CYS A 32 0 SHEET 2 A 8 ARG A 70 VAL A 74 1 O VAL A 74 N CYS A 32 SHEET 3 A 8 ALA A 97 ALA A 101 1 O ARG A 98 N ILE A 73 SHEET 4 A 8 MET A 120 ASN A 126 1 O GLY A 122 N ALA A 101 SHEET 5 A 8 HIS A 152 TYR A 156 1 O VAL A 154 N ILE A 123 SHEET 6 A 8 ILE A 176 ILE A 178 1 O VAL A 177 N ILE A 155 SHEET 7 A 8 ILE A 208 LYS A 211 1 O TRP A 209 N ILE A 176 SHEET 8 A 8 VAL A 243 ILE A 244 1 O ILE A 244 N PHE A 210 SHEET 1 B 8 ILE B 28 CYS B 32 0 SHEET 2 B 8 ARG B 70 VAL B 74 1 O VAL B 74 N CYS B 32 SHEET 3 B 8 ALA B 97 ALA B 101 1 O ARG B 98 N ILE B 73 SHEET 4 B 8 MET B 120 ASN B 126 1 O GLY B 122 N ALA B 101 SHEET 5 B 8 HIS B 152 TYR B 156 1 O VAL B 154 N ILE B 123 SHEET 6 B 8 ILE B 176 ILE B 178 1 O VAL B 177 N ILE B 155 SHEET 7 B 8 ILE B 208 LYS B 211 1 O TRP B 209 N ILE B 176 SHEET 8 B 8 VAL B 243 ILE B 244 1 O ILE B 244 N PHE B 210 LINK MG MG B 403 O HOH B 591 1555 1555 2.09 LINK MG MG B 403 O HOH B 688 1555 1555 2.15 LINK MG MG B 403 O HOH B 701 1555 1555 2.09 LINK MG MG B 403 O HOH B 741 1555 1555 2.05 LINK MG MG B 403 O HOH B 759 1555 1555 2.25 LINK MG MG B 403 O HOH B 783 1555 1555 2.69 LINK MG MG B 404 O HOH B 630 1555 1555 2.06 LINK MG MG B 404 O HOH B 674 1555 1555 2.13 LINK MG MG B 404 O HOH B 719 1555 1555 1.99 LINK MG MG B 404 O HOH B 737 1555 1555 2.15 LINK MG MG B 404 O HOH B 781 1555 1555 1.99 CISPEP 1 GLY A 36 PRO A 37 0 1.32 CISPEP 2 PRO A 223 PRO A 224 0 9.43 CISPEP 3 TRP A 249 PRO A 250 0 7.34 CISPEP 4 GLY B 36 PRO B 37 0 0.26 CISPEP 5 PRO B 223 PRO B 224 0 11.29 CISPEP 6 TRP B 249 PRO B 250 0 7.46 SITE 1 AC1 14 HIS A 31 HIS A 33 TYR A 49 ALA A 76 SITE 2 AC1 14 SER A 77 ARG A 124 ARG A 130 LEU A 131 SITE 3 AC1 14 TYR A 156 HIS A 180 ARG A 183 ARG A 217 SITE 4 AC1 14 ASN A 253 ACT A 402 SITE 1 AC2 8 ARG A 130 ARG A 183 ARG A 217 ASN A 253 SITE 2 AC2 8 0GZ A 401 0GY A 403 HOH A 651 HOH A 705 SITE 1 AC3 15 HIS A 31 HIS A 33 TYR A 49 ALA A 76 SITE 2 AC3 15 SER A 77 ARG A 124 ARG A 130 LEU A 131 SITE 3 AC3 15 TYR A 156 HIS A 180 ARG A 183 ARG A 217 SITE 4 AC3 15 PRO A 252 ASN A 253 ACT A 402 SITE 1 AC4 15 HIS B 31 HIS B 33 TYR B 49 SER B 77 SITE 2 AC4 15 ARG B 124 ARG B 130 LEU B 131 TYR B 156 SITE 3 AC4 15 HIS B 180 ARG B 183 ARG B 217 PRO B 252 SITE 4 AC4 15 ASN B 253 ACT B 402 HOH B 698 SITE 1 AC5 7 ARG B 130 ARG B 183 ARG B 217 ASN B 253 SITE 2 AC5 7 0GY B 405 HOH B 735 HOH B 826 SITE 1 AC6 6 HOH B 591 HOH B 688 HOH B 701 HOH B 741 SITE 2 AC6 6 HOH B 759 HOH B 783 SITE 1 AC7 5 HOH B 630 HOH B 674 HOH B 719 HOH B 737 SITE 2 AC7 5 HOH B 781 SITE 1 AC8 16 HIS B 31 HIS B 33 TYR B 49 ALA B 76 SITE 2 AC8 16 SER B 77 ARG B 124 ARG B 130 LEU B 131 SITE 3 AC8 16 TYR B 156 HIS B 180 ARG B 183 ARG B 217 SITE 4 AC8 16 PRO B 252 ASN B 253 ACT B 402 HOH B 698 CRYST1 74.348 52.131 76.539 90.00 93.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013450 0.000000 0.000877 0.00000 SCALE2 0.000000 0.019182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013093 0.00000 MASTER 385 0 8 34 16 0 24 6 0 0 0 48 END