HEADER HYDROLASE 23-OCT-14 4D3Q TITLE CRYSTAL STRUCTURE OF POINT MUTATED DUSP19 (R156A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN PHOSPHATASE 19; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHOSPHATASE DOMAINS, UNP RESIDUES 66-202; COMPND 5 SYNONYM: DUAL SPECIFICITY PHOSPHATASE TS-DSP1, LOW MOLECULAR WEIGHT COMPND 6 DUAL SPECIFICITY PHOSPHATASE 3, LMW-DSP3, PROTEIN PHOSPHATASE SKRP COMPND 7 1, STRESS-ACTIVATED PROTEIN KINASE PATHWAY-REGULATING PHOSPHATASE COMPND 8 1, SAPK PATHWAY-REGULATING PHOSPHATASE 1; COMPND 9 EC: 3.1.3.16, 3.1.3.48; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, DUSP19, POINT MUTATION EXPDTA X-RAY DIFFRACTION AUTHOR T.J.JEON,K.T.NAM,S.E.RYU REVDAT 1 04-NOV-15 4D3Q 0 JRNL AUTH T.J.JEON,K.T.NAM,S.E.RYU JRNL TITL STRUCTURAL ANALYSIS OF ACTIVITY-MODULATING MUTATIONS OF JRNL TITL 2 DUSP19 JRNL REF BIODESIGN V. 3 116 2015 JRNL REFN ISSN 2288-6982 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.92 REMARK 3 NUMBER OF REFLECTIONS : 46983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17510 REMARK 3 R VALUE (WORKING SET) : 0.17394 REMARK 3 FREE R VALUE : 0.19638 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.640 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.679 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.186 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.214 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.672 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42 REMARK 3 B22 (A**2) : 0.42 REMARK 3 B33 (A**2) : -1.36 REMARK 3 B12 (A**2) : 0.42 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2207 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2103 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2993 ; 2.440 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4844 ; 1.089 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 5.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;39.451 ;25.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;14.055 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2488 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4D3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-14. REMARK 100 THE PDBE ID CODE IS EBI-62116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.64 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.7 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.9 REMARK 200 R MERGE FOR SHELL (I) : 0.23 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3S4E REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CITRATE TRIBASIC DEHYDRATE (PH REMARK 280 5.6), 2.0M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.17967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.35933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.35933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.17967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2050 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 HIS A 61 REMARK 465 MET A 62 REMARK 465 ALA A 63 REMARK 465 SER A 64 REMARK 465 GLY B 59 REMARK 465 SER B 60 REMARK 465 HIS B 61 REMARK 465 MET B 62 REMARK 465 ALA B 63 REMARK 465 SER B 64 REMARK 465 GLN B 65 REMARK 465 GLY B 203 REMARK 465 LYS B 204 REMARK 465 GLU B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 188 O HOH A 2082 2.16 REMARK 500 O HOH A 2019 O HOH A 2020 0.88 REMARK 500 O HOH A 2021 O HOH A 2022 0.63 REMARK 500 O HOH A 2032 O HOH A 2033 0.63 REMARK 500 O HOH A 2063 O HOH A 2065 0.56 REMARK 500 O HOH B 2037 O HOH B 2038 0.81 REMARK 500 O HOH B 2058 O HOH A 2083 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2023 O HOH A 2051 5554 0.67 REMARK 500 O HOH A 2031 O HOH A 2053 5554 0.58 REMARK 500 O HOH A 2037 O HOH A 2066 5554 0.67 REMARK 500 O HOH A 2047 O HOH A 2047 5554 2.07 REMARK 500 O HOH A 2047 O HOH A 2049 5554 0.80 REMARK 500 O HOH B 2026 O HOH B 2041 5554 1.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 65 C GLN A 65 O 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE A 133 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 PHE A 133 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 CYS A 188 CA - CB - SG ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG A 198 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP B 119 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 LEU B 179 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 -141.44 -135.57 REMARK 500 ASN A 151 -88.59 -80.31 REMARK 500 SER A 155 -78.47 -128.98 REMARK 500 CYS A 188 75.36 -163.83 REMARK 500 SER B 150 -147.28 -126.11 REMARK 500 SER B 155 -79.02 -120.94 REMARK 500 CYS B 188 80.63 -166.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 65 23.9 L L OUTSIDE RANGE REMARK 500 VAL B 66 21.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1344 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D3P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF POINT MUTATED DUSP19 (C150A) REMARK 900 RELATED ID: 4D3R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF POINT MUTATED DUSP19 (I187A) DBREF 4D3Q A 65 205 UNP Q8WTR2 DUS19_HUMAN 65 205 DBREF 4D3Q B 65 205 UNP Q8WTR2 DUS19_HUMAN 65 205 SEQADV 4D3Q GLY A 59 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q SER A 60 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q HIS A 61 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q MET A 62 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q ALA A 63 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q SER A 64 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q SER A 150 UNP Q8WTR2 CYS 150 ENGINEERED MUTATION SEQADV 4D3Q ALA A 156 UNP Q8WTR2 ARG 156 ENGINEERED MUTATION SEQADV 4D3Q GLY B 59 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q SER B 60 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q HIS B 61 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q MET B 62 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q ALA B 63 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q SER B 64 UNP Q8WTR2 EXPRESSION TAG SEQADV 4D3Q SER B 150 UNP Q8WTR2 CYS 150 ENGINEERED MUTATION SEQADV 4D3Q ALA B 156 UNP Q8WTR2 ARG 156 ENGINEERED MUTATION SEQRES 1 A 147 GLY SER HIS MET ALA SER GLN VAL GLY VAL ILE LYS PRO SEQRES 2 A 147 TRP LEU LEU LEU GLY SER GLN ASP ALA ALA HIS ASP LEU SEQRES 3 A 147 ASP THR LEU LYS LYS ASN LYS VAL THR HIS ILE LEU ASN SEQRES 4 A 147 VAL ALA TYR GLY VAL GLU ASN ALA PHE LEU SER ASP PHE SEQRES 5 A 147 THR TYR LYS SER ILE SER ILE LEU ASP LEU PRO GLU THR SEQRES 6 A 147 ASN ILE LEU SER TYR PHE PRO GLU CYS PHE GLU PHE ILE SEQRES 7 A 147 GLU GLU ALA LYS ARG LYS ASP GLY VAL VAL LEU VAL HIS SEQRES 8 A 147 SER ASN ALA GLY VAL SER ALA ALA ALA ALA ILE VAL ILE SEQRES 9 A 147 GLY PHE LEU MET ASN SER GLU GLN THR SER PHE THR SER SEQRES 10 A 147 ALA PHE SER LEU VAL LYS ASN ALA ARG PRO SER ILE CYS SEQRES 11 A 147 PRO ASN SER GLY PHE MET GLU GLN LEU ARG THR TYR GLN SEQRES 12 A 147 GLU GLY LYS GLU SEQRES 1 B 147 GLY SER HIS MET ALA SER GLN VAL GLY VAL ILE LYS PRO SEQRES 2 B 147 TRP LEU LEU LEU GLY SER GLN ASP ALA ALA HIS ASP LEU SEQRES 3 B 147 ASP THR LEU LYS LYS ASN LYS VAL THR HIS ILE LEU ASN SEQRES 4 B 147 VAL ALA TYR GLY VAL GLU ASN ALA PHE LEU SER ASP PHE SEQRES 5 B 147 THR TYR LYS SER ILE SER ILE LEU ASP LEU PRO GLU THR SEQRES 6 B 147 ASN ILE LEU SER TYR PHE PRO GLU CYS PHE GLU PHE ILE SEQRES 7 B 147 GLU GLU ALA LYS ARG LYS ASP GLY VAL VAL LEU VAL HIS SEQRES 8 B 147 SER ASN ALA GLY VAL SER ALA ALA ALA ALA ILE VAL ILE SEQRES 9 B 147 GLY PHE LEU MET ASN SER GLU GLN THR SER PHE THR SER SEQRES 10 B 147 ALA PHE SER LEU VAL LYS ASN ALA ARG PRO SER ILE CYS SEQRES 11 B 147 PRO ASN SER GLY PHE MET GLU GLN LEU ARG THR TYR GLN SEQRES 12 B 147 GLU GLY LYS GLU HET SO4 A1343 5 HET SO4 B1344 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 HOH *159(H2 O) HELIX 1 1 SER A 77 HIS A 82 1 6 HELIX 2 2 ASP A 83 ASN A 90 1 8 HELIX 3 3 ASN A 124 SER A 127 5 4 HELIX 4 4 TYR A 128 LYS A 142 1 15 HELIX 5 5 SER A 155 GLN A 170 1 16 HELIX 6 6 SER A 172 ARG A 184 1 13 HELIX 7 7 ASN A 190 THR A 199 1 10 HELIX 8 8 SER B 77 HIS B 82 1 6 HELIX 9 9 ASP B 83 ASN B 90 1 8 HELIX 10 10 ASN B 124 SER B 127 5 4 HELIX 11 11 TYR B 128 LYS B 142 1 15 HELIX 12 12 SER B 155 GLN B 170 1 16 HELIX 13 13 SER B 172 ARG B 184 1 13 HELIX 14 14 ASN B 190 THR B 199 1 10 SHEET 1 AA 5 VAL A 66 LYS A 70 0 SHEET 2 AA 5 LEU A 73 GLY A 76 -1 O LEU A 73 N ILE A 69 SHEET 3 AA 5 VAL A 146 HIS A 149 1 O VAL A 146 N LEU A 74 SHEET 4 AA 5 HIS A 94 ASN A 97 1 O HIS A 94 N LEU A 147 SHEET 5 AA 5 THR A 111 SER A 114 1 O THR A 111 N ILE A 95 SHEET 1 BA 5 GLY B 67 LYS B 70 0 SHEET 2 BA 5 LEU B 73 GLY B 76 -1 O LEU B 73 N ILE B 69 SHEET 3 BA 5 VAL B 146 HIS B 149 1 O VAL B 146 N LEU B 74 SHEET 4 BA 5 HIS B 94 ASN B 97 1 O HIS B 94 N LEU B 147 SHEET 5 BA 5 THR B 111 SER B 114 1 O THR B 111 N ILE B 95 SITE 1 AC1 11 ASP A 119 SER A 150 ASN A 151 ALA A 152 SITE 2 AC1 11 GLY A 153 VAL A 154 SER A 155 ALA A 156 SITE 3 AC1 11 ALA A 157 HOH A2054 HOH A2056 SITE 1 AC2 10 HOH A2056 HOH A2071 SER B 150 ASN B 151 SITE 2 AC2 10 ALA B 152 GLY B 153 VAL B 154 SER B 155 SITE 3 AC2 10 ALA B 156 HOH B2048 CRYST1 86.064 86.064 93.539 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011619 0.006708 0.000000 0.00000 SCALE2 0.000000 0.013417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010691 0.00000 MASTER 423 0 2 14 10 0 6 6 0 0 0 24 END