HEADER PROTEIN/DNA 20-APR-99 4CRX TITLE ASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION TITLE 2 SYNAPSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (35 NUCLEOTIDE CRE RECOGNITION SITE); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (CRE RECOMBINASE); COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 5 ORGANISM_TAXID: 10678; SOURCE 6 ATCC: 25404-B1; SOURCE 7 COLLECTION: 25404-B1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS CRE RECOMBINASE, DNA BENDING, RECOMBINATION, PROTEIN-DNA INTERACTION, KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.GUO,D.N.GOPAUL,G.D.VAN DUYNE REVDAT 4 27-NOV-19 4CRX 1 JRNL REVDAT 3 24-FEB-09 4CRX 1 VERSN REVDAT 2 01-APR-03 4CRX 1 JRNL REVDAT 1 14-JUN-99 4CRX 0 JRNL AUTH F.GUO,D.N.GOPAUL,G.D.VAN DUYNE JRNL TITL ASYMMETRIC DNA BENDING IN THE CRE-LOXP SITE-SPECIFIC JRNL TITL 2 RECOMBINATION SYNAPSE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 7143 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10377382 JRNL DOI 10.1073/PNAS.96.13.7143 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.GUO,D.N.GOPAUL,G.D.VAN DUYNE REMARK 1 TITL STRUCTURE OF CRE RECOMBINASE COMPLEXED WITH DNA IN A REMARK 1 TITL 2 SITE-SPECIFIC RECOMBINATION SYNAPSE. REMARK 1 REF NATURE V. 389 40 1997 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 9288963 REMARK 1 DOI 10.1038/37925 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 55807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2789 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5308 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 293 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5098 REMARK 3 NUCLEIC ACID ATOMS : 1428 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.00 REMARK 3 ESD FROM SIGMAA (A) : 0.00 REMARK 3 LOW RESOLUTION CUTOFF (A) : 0.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.00 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.000 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.400 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : N.A. REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : N.A. REMARK 3 TOPOLOGY FILE 4 : N.A. REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9188 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 32.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26100 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1CRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM ACETATE PH 5.0 35% MPD 20MM CACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.50000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 122.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 181.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 340 N ASP B 341 0.71 REMARK 500 O GLU B 340 CA ASP B 341 0.76 REMARK 500 OP2 DT D 18 CG2 THR A 202 1.25 REMARK 500 O GLY A 208 N VAL A 209 1.45 REMARK 500 CD ARG B 297 CD2 LEU B 328 1.57 REMARK 500 O SER B 330 O HOH B 499 1.59 REMARK 500 NH2 ARG A 199 NZ LYS A 211 1.59 REMARK 500 O LYS B 201 CG2 THR B 202 1.63 REMARK 500 O GLY B 198 N ARG B 199 1.76 REMARK 500 CA GLU B 340 N ASP B 341 1.76 REMARK 500 O VAL B 204 O SER B 205 1.80 REMARK 500 OP2 DT D 18 CB THR A 202 1.90 REMARK 500 NE ARG B 297 CD2 LEU B 328 2.01 REMARK 500 P DT D 18 CG2 THR A 202 2.12 REMARK 500 OD1 ASP A 341 O HOH A 460 2.12 REMARK 500 NH1 ARG B 199 O HOH B 492 2.18 REMARK 500 O HOH A 426 O HOH B 469 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 329 O HOH B 440 8556 0.72 REMARK 500 O5' DT D 1 O HOH B 449 6655 0.86 REMARK 500 OD1 ASP A 126 NE ARG B 199 4566 1.47 REMARK 500 CG ASP B 329 O HOH B 440 8556 1.48 REMARK 500 OD1 ASP A 126 CD ARG B 199 4566 1.94 REMARK 500 C5' DT D 1 O HOH B 449 6655 1.96 REMARK 500 O HOH B 455 O HOH B 462 8556 2.11 REMARK 500 CB ASP B 329 O HOH B 440 8556 2.15 REMARK 500 OD1 ASP A 126 CZ ARG B 199 4566 2.16 REMARK 500 N SER B 330 O HOH B 421 8556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 1 O4' DT D 1 C1' -0.079 REMARK 500 DT D 1 C5 DT D 1 C7 0.037 REMARK 500 GLY A 208 C VAL A 209 N -0.389 REMARK 500 GLY B 198 C ARG B 199 N -0.295 REMARK 500 GLU B 340 C ASP B 341 N -0.629 REMARK 500 ASP B 341 C ASP B 341 OXT 4.528 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 1 C1' - O4' - C4' ANGL. DEV. = -16.6 DEGREES REMARK 500 DT D 1 C3' - C2' - C1' ANGL. DEV. = -7.2 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 7.9 DEGREES REMARK 500 DT D 1 C6 - N1 - C2 ANGL. DEV. = 5.6 DEGREES REMARK 500 DT D 1 C5 - C6 - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC D 22 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ILE A 197 CA - C - N ANGL. DEV. = -18.9 DEGREES REMARK 500 ILE A 197 O - C - N ANGL. DEV. = -30.9 DEGREES REMARK 500 GLY A 198 C - N - CA ANGL. DEV. = -14.1 DEGREES REMARK 500 GLY A 208 CA - C - N ANGL. DEV. = 25.0 DEGREES REMARK 500 GLY A 208 O - C - N ANGL. DEV. = -40.2 DEGREES REMARK 500 ASP A 341 CA - C - O ANGL. DEV. = 29.9 DEGREES REMARK 500 GLY B 198 CA - C - N ANGL. DEV. = 19.9 DEGREES REMARK 500 GLY B 198 O - C - N ANGL. DEV. = -21.4 DEGREES REMARK 500 ARG B 199 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU B 340 CA - C - N ANGL. DEV. = -19.3 DEGREES REMARK 500 GLU B 340 O - C - N ANGL. DEV. = -93.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 40.27 -104.83 REMARK 500 GLU A 150 -56.58 -8.98 REMARK 500 ASP A 189 98.65 64.37 REMARK 500 LYS A 201 28.12 -141.70 REMARK 500 VAL A 209 154.61 137.88 REMARK 500 SER A 214 -176.56 -64.40 REMARK 500 ALA A 275 147.16 -38.22 REMARK 500 ASP A 278 -11.71 55.47 REMARK 500 ASP B 33 56.62 -107.60 REMARK 500 GLN B 35 -5.85 -56.18 REMARK 500 ASN B 60 62.05 36.13 REMARK 500 THR B 200 -116.12 -111.20 REMARK 500 THR B 202 144.45 162.47 REMARK 500 LEU B 203 159.10 137.40 REMARK 500 ASP B 277 -159.15 -63.25 REMARK 500 ASP B 278 29.96 -141.69 REMARK 500 TYR B 283 30.89 77.87 REMARK 500 ASN B 317 -132.67 -122.69 REMARK 500 VAL B 318 -1.52 -168.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 208 VAL A 209 -133.80 REMARK 500 GLU B 340 ASP B 341 -145.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA D 17 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 197 36.21 REMARK 500 GLY A 208 -39.55 REMARK 500 GLU B 340 98.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE DBREF 4CRX A 20 341 UNP P06956 RECR_BPP1 1 322 DBREF 4CRX B 20 341 UNP P06956 RECR_BPP1 1 322 DBREF 4CRX C 1 35 PDB 4CRX 4CRX 1 35 DBREF 4CRX D 1 35 PDB 4CRX 4CRX 1 35 SEQADV 4CRX LYS A 173 UNP P06956 ARG 154 ENGINEERED SEQADV 4CRX LYS B 173 UNP P06956 ARG 154 ENGINEERED SEQRES 1 C 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 C 35 DA DG DC DA DT DA DT DG DC DT DA DT DA SEQRES 3 C 35 DC DG DA DA DG DT DT DA DT SEQRES 1 D 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 D 35 DA DG DC DA DT DA DT DG DC DT DA DT DA SEQRES 3 D 35 DC DG DA DA DG DT DT DA DT SEQRES 1 A 322 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 A 322 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 A 322 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 A 322 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 A 322 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 A 322 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 A 322 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 A 322 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 A 322 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 A 322 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 A 322 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 A 322 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU LYS ILE ALA SEQRES 13 A 322 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 A 322 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 A 322 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 A 322 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 A 322 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 A 322 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 A 322 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 A 322 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 A 322 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 A 322 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 A 322 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 A 322 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 A 322 THR GLY ALA MET VAL ARG LEU LEU GLU ASP SEQRES 1 B 322 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 B 322 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 B 322 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 B 322 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 B 322 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 B 322 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 B 322 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 B 322 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 B 322 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 B 322 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 B 322 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 B 322 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU LYS ILE ALA SEQRES 13 B 322 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 B 322 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 B 322 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 B 322 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 B 322 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 B 322 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 B 322 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 B 322 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 B 322 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 B 322 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 B 322 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 B 322 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 B 322 THR GLY ALA MET VAL ARG LEU LEU GLU ASP FORMUL 5 HOH *473(H2 O) HELIX 1 20 ASP A 21 ARG A 32 1 12 HELIX 2 21 ARG A 34 ALA A 36 5 3 HELIX 3 22 GLU A 39 ASN A 59 1 21 HELIX 4 4 PRO A 68 ARG A 81 1 14 HELIX 5 24 VAL A 85 SER A 102 1 18 HELIX 6 25 PRO A 107 ASP A 109 5 3 HELIX 7 26 ASN A 111 ASP A 126 1 16 HELIX 8 8 ARG A 139 MET A 149 1 11 HELIX 9 28 CYS A 155 THR A 170 1 16 HELIX 10 29 ILE A 174 ARG A 179 1 6 HELIX 11 30 VAL A 182 ASP A 184 5 3 HELIX 12 31 LEU A 215 SER A 228 1 14 HELIX 13 32 VAL A 230 ASP A 232 5 3 HELIX 14 33 THR A 258 TYR A 273 1 16 HELIX 15 34 SER A 290 ALA A 302 1 13 HELIX 16 35 ILE A 306 GLY A 313 1 8 HELIX 17 36 ASN A 319 ILE A 325 1 7 HELIX 18 37 ASP A 329 GLU A 331 5 3 HELIX 19 38 ALA A 334 LEU A 339 1 6 HELIX 20 20 ASP B 21 ARG B 32 1 12 HELIX 21 21 ARG B 34 ALA B 36 5 3 HELIX 22 22 GLU B 39 ASN B 59 1 21 HELIX 23 23 PRO B 68 ALA B 80 1 13 HELIX 24 24 VAL B 85 SER B 102 1 18 HELIX 25 25 PRO B 107 ASP B 109 5 3 HELIX 26 26 ASN B 111 ASP B 126 1 16 HELIX 27 27 ARG B 139 ASN B 151 1 13 HELIX 28 28 CYS B 155 THR B 170 1 16 HELIX 29 29 ILE B 174 ARG B 179 1 6 HELIX 30 30 VAL B 182 ASP B 184 5 3 HELIX 31 31 LEU B 215 SER B 228 1 14 HELIX 32 32 VAL B 230 ASP B 232 5 3 HELIX 33 33 THR B 258 TYR B 273 1 16 HELIX 34 34 SER B 290 ALA B 302 1 13 HELIX 35 35 ILE B 306 GLY B 313 1 8 HELIX 36 36 ASN B 319 ILE B 325 1 7 HELIX 37 37 ASP B 329 GLU B 331 5 3 HELIX 38 38 ALA B 334 LEU B 339 1 6 SHEET 1 A 3 ILE A 185 ARG A 187 0 SHEET 2 A 3 MET A 193 HIS A 196 -1 N LEU A 194 O SER A 186 SHEET 3 A 3 GLU A 210 ALA A 212 -1 N LYS A 211 O ILE A 195 SHEET 1 B 3 ILE B 185 ARG B 187 0 SHEET 2 B 3 MET B 193 ILE B 197 -1 N LEU B 194 O SER B 186 SHEET 3 B 3 VAL B 209 ALA B 212 -1 N LYS B 211 O ILE B 195 CISPEP 1 PHE A 64 PRO A 65 0 -0.60 CISPEP 2 PHE B 64 PRO B 65 0 -1.26 SITE 1 CAA 5 LYS A 173 HIS A 289 ARG A 292 TRP A 315 SITE 2 CAA 5 TYR A 324 SITE 1 CAB 5 LYS B 173 HIS B 289 ARG B 292 TRP B 315 SITE 2 CAB 5 TYR B 324 CRYST1 108.800 122.100 181.000 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005525 0.00000 MASTER 437 0 0 38 6 0 4 6 0 0 0 56 END