HEADER OXIDOREDUCTASE 28-FEB-14 4CRT TITLE CRYSTAL STRUCTURE OF HUMAN MONOAMINE OXIDASE B IN COMPLEX TITLE 2 WITH THE MULTI-TARGET INHIBITOR ASS234 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINE OXIDASE [FLAVIN-CONTAINING] B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MONOAMINE OXIDASE B, MONOAMINE OXIDASE TYPE B, MAO-B; COMPND 5 EC: 1.4.3.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KM71 KEYWDS OXIDOREDUCTASE, ENZYME, FLAVIN, DRUG DESIGN, ALZHEIMER'S DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ESTEBAN,J.ALLAN,A.SAMADI,A.MATTEVI,M.UNZETA,J.MARCO-CONTELLES, AUTHOR 2 C.BINDA,R.R.RAMSAY REVDAT 2 07-MAY-14 4CRT 1 JRNL REVDAT 1 02-APR-14 4CRT 0 JRNL AUTH G.ESTEBAN,J.ALLAN,A.SAMADI,A.MATTEVI,M.UNZETA, JRNL AUTH 2 J.MARCO-CONTELLES,C.BINDA,R.R.RAMSAY JRNL TITL KINETIC AND STRUCTURAL ANALYSIS OF THE IRREVERSIBLE JRNL TITL 2 INHIBITION OF HUMAN MONOAMINE OXIDASES BY ASS234, A MULTI- JRNL TITL 3 TARGET COMPOUND DESIGNED FOR USE IN ALZHEIMER'S DISEASE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1844 1104 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 24642166 JRNL DOI 10.1016/J.BBAPAP.2014.03.006 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 98.11 REMARK 3 NUMBER OF REFLECTIONS : 112799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18734 REMARK 3 R VALUE (WORKING SET) : 0.18647 REMARK 3 FREE R VALUE : 0.22083 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.5 REMARK 3 FREE R VALUE TEST SET COUNT : 2907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.800 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.847 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7834 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.299 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.335 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.711 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.46 REMARK 3 B22 (A**2) : -0.45 REMARK 3 B33 (A**2) : -1.01 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8268 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11237 ; 1.448 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 991 ; 5.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 358 ;33.273 ;23.520 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1410 ;13.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;14.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1222 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6212 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3970 ; 1.344 ; 2.188 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4959 ; 1.996 ; 3.271 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4296 ; 2.131 ; 2.454 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4CRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-14. REMARK 100 THE PDBE ID CODE IS EBI-59863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.80 REMARK 200 RESOLUTION RANGE LOW (A) : 40.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.2 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 111.62500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 111.62500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 66.03000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 111.62500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 66.03000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 111.62500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2093 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2241 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2245 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2270 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 502 REMARK 465 SER A 503 REMARK 465 ALA A 504 REMARK 465 THR A 505 REMARK 465 ALA A 506 REMARK 465 LEU A 507 REMARK 465 GLY A 508 REMARK 465 PHE A 509 REMARK 465 LEU A 510 REMARK 465 ALA A 511 REMARK 465 HIS A 512 REMARK 465 LYS A 513 REMARK 465 ARG A 514 REMARK 465 GLY A 515 REMARK 465 LEU A 516 REMARK 465 LEU A 517 REMARK 465 VAL A 518 REMARK 465 ARG A 519 REMARK 465 VAL A 520 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 497 REMARK 465 LEU B 498 REMARK 465 THR B 499 REMARK 465 THR B 500 REMARK 465 ILE B 501 REMARK 465 PHE B 502 REMARK 465 SER B 503 REMARK 465 ALA B 504 REMARK 465 THR B 505 REMARK 465 ALA B 506 REMARK 465 LEU B 507 REMARK 465 GLY B 508 REMARK 465 PHE B 509 REMARK 465 LEU B 510 REMARK 465 ALA B 511 REMARK 465 HIS B 512 REMARK 465 LYS B 513 REMARK 465 ARG B 514 REMARK 465 GLY B 515 REMARK 465 LEU B 516 REMARK 465 LEU B 517 REMARK 465 VAL B 518 REMARK 465 ARG B 519 REMARK 465 VAL B 520 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 475 NE2 GLN A 475 3656 1.93 REMARK 500 NH2 ARG B 494 O HOH A 2087 6565 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 448 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 52 -71.94 67.88 REMARK 500 SER A 59 -51.63 -141.31 REMARK 500 THR A 64 -8.51 80.93 REMARK 500 ALA A 133 68.65 -167.08 REMARK 500 THR A 201 -83.40 -85.83 REMARK 500 ARG A 233 71.36 -119.63 REMARK 500 ALA A 346 -123.79 53.47 REMARK 500 GLU A 379 60.12 -114.88 REMARK 500 ASP A 419 -102.58 57.50 REMARK 500 ALA A 424 -152.30 -103.70 REMARK 500 TYR B 44 116.78 -160.28 REMARK 500 LYS B 52 -74.64 63.69 REMARK 500 SER B 59 -44.87 -142.58 REMARK 500 THR B 64 -5.29 78.50 REMARK 500 ALA B 133 71.59 -163.38 REMARK 500 THR B 201 -78.89 -83.64 REMARK 500 HIS B 252 -0.08 77.98 REMARK 500 ALA B 346 -124.47 55.74 REMARK 500 ASP B 419 -104.99 59.48 REMARK 500 ALA B 424 -153.95 -104.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 N-((5-(3-(1-BENZYLPIPERIDIN-4-YL)PROPOXY)-1-METHYL-1H-INDOL-2-YL)METH REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ASS A 601 REMARK 610 ASS B 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUES REMARK 800 FAD A 600 AND ASS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUES REMARK 800 FAD B 600 AND ASS B 601 DBREF 4CRT A 1 520 UNP P27338 AOFB_HUMAN 1 520 DBREF 4CRT B 1 520 UNP P27338 AOFB_HUMAN 1 520 SEQRES 1 A 520 MET SER ASN LYS CYS ASP VAL VAL VAL VAL GLY GLY GLY SEQRES 2 A 520 ILE SER GLY MET ALA ALA ALA LYS LEU LEU HIS ASP SER SEQRES 3 A 520 GLY LEU ASN VAL VAL VAL LEU GLU ALA ARG ASP ARG VAL SEQRES 4 A 520 GLY GLY ARG THR TYR THR LEU ARG ASN GLN LYS VAL LYS SEQRES 5 A 520 TYR VAL ASP LEU GLY GLY SER TYR VAL GLY PRO THR GLN SEQRES 6 A 520 ASN ARG ILE LEU ARG LEU ALA LYS GLU LEU GLY LEU GLU SEQRES 7 A 520 THR TYR LYS VAL ASN GLU VAL GLU ARG LEU ILE HIS HIS SEQRES 8 A 520 VAL LYS GLY LYS SER TYR PRO PHE ARG GLY PRO PHE PRO SEQRES 9 A 520 PRO VAL TRP ASN PRO ILE THR TYR LEU ASP HIS ASN ASN SEQRES 10 A 520 PHE TRP ARG THR MET ASP ASP MET GLY ARG GLU ILE PRO SEQRES 11 A 520 SER ASP ALA PRO TRP LYS ALA PRO LEU ALA GLU GLU TRP SEQRES 12 A 520 ASP ASN MET THR MET LYS GLU LEU LEU ASP LYS LEU CYS SEQRES 13 A 520 TRP THR GLU SER ALA LYS GLN LEU ALA THR LEU PHE VAL SEQRES 14 A 520 ASN LEU CYS VAL THR ALA GLU THR HIS GLU VAL SER ALA SEQRES 15 A 520 LEU TRP PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR SEQRES 16 A 520 THR ARG ILE ILE SER THR THR ASN GLY GLY GLN GLU ARG SEQRES 17 A 520 LYS PHE VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE SEQRES 18 A 520 MET ASP LEU LEU GLY ASP ARG VAL LYS LEU GLU ARG PRO SEQRES 19 A 520 VAL ILE TYR ILE ASP GLN THR ARG GLU ASN VAL LEU VAL SEQRES 20 A 520 GLU THR LEU ASN HIS GLU MET TYR GLU ALA LYS TYR VAL SEQRES 21 A 520 ILE SER ALA ILE PRO PRO THR LEU GLY MET LYS ILE HIS SEQRES 22 A 520 PHE ASN PRO PRO LEU PRO MET MET ARG ASN GLN MET ILE SEQRES 23 A 520 THR ARG VAL PRO LEU GLY SER VAL ILE LYS CYS ILE VAL SEQRES 24 A 520 TYR TYR LYS GLU PRO PHE TRP ARG LYS LYS ASP TYR CYS SEQRES 25 A 520 GLY THR MET ILE ILE ASP GLY GLU GLU ALA PRO VAL ALA SEQRES 26 A 520 TYR THR LEU ASP ASP THR LYS PRO GLU GLY ASN TYR ALA SEQRES 27 A 520 ALA ILE MET GLY PHE ILE LEU ALA HIS LYS ALA ARG LYS SEQRES 28 A 520 LEU ALA ARG LEU THR LYS GLU GLU ARG LEU LYS LYS LEU SEQRES 29 A 520 CYS GLU LEU TYR ALA LYS VAL LEU GLY SER LEU GLU ALA SEQRES 30 A 520 LEU GLU PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU SEQRES 31 A 520 GLU GLN TYR SER GLY GLY CYS TYR THR THR TYR PHE PRO SEQRES 32 A 520 PRO GLY ILE LEU THR GLN TYR GLY ARG VAL LEU ARG GLN SEQRES 33 A 520 PRO VAL ASP ARG ILE TYR PHE ALA GLY THR GLU THR ALA SEQRES 34 A 520 THR HIS TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA SEQRES 35 A 520 GLY GLU ARG ALA ALA ARG GLU ILE LEU HIS ALA MET GLY SEQRES 36 A 520 LYS ILE PRO GLU ASP GLU ILE TRP GLN SER GLU PRO GLU SEQRES 37 A 520 SER VAL ASP VAL PRO ALA GLN PRO ILE THR THR THR PHE SEQRES 38 A 520 LEU GLU ARG HIS LEU PRO SER VAL PRO GLY LEU LEU ARG SEQRES 39 A 520 LEU ILE GLY LEU THR THR ILE PHE SER ALA THR ALA LEU SEQRES 40 A 520 GLY PHE LEU ALA HIS LYS ARG GLY LEU LEU VAL ARG VAL SEQRES 1 B 520 MET SER ASN LYS CYS ASP VAL VAL VAL VAL GLY GLY GLY SEQRES 2 B 520 ILE SER GLY MET ALA ALA ALA LYS LEU LEU HIS ASP SER SEQRES 3 B 520 GLY LEU ASN VAL VAL VAL LEU GLU ALA ARG ASP ARG VAL SEQRES 4 B 520 GLY GLY ARG THR TYR THR LEU ARG ASN GLN LYS VAL LYS SEQRES 5 B 520 TYR VAL ASP LEU GLY GLY SER TYR VAL GLY PRO THR GLN SEQRES 6 B 520 ASN ARG ILE LEU ARG LEU ALA LYS GLU LEU GLY LEU GLU SEQRES 7 B 520 THR TYR LYS VAL ASN GLU VAL GLU ARG LEU ILE HIS HIS SEQRES 8 B 520 VAL LYS GLY LYS SER TYR PRO PHE ARG GLY PRO PHE PRO SEQRES 9 B 520 PRO VAL TRP ASN PRO ILE THR TYR LEU ASP HIS ASN ASN SEQRES 10 B 520 PHE TRP ARG THR MET ASP ASP MET GLY ARG GLU ILE PRO SEQRES 11 B 520 SER ASP ALA PRO TRP LYS ALA PRO LEU ALA GLU GLU TRP SEQRES 12 B 520 ASP ASN MET THR MET LYS GLU LEU LEU ASP LYS LEU CYS SEQRES 13 B 520 TRP THR GLU SER ALA LYS GLN LEU ALA THR LEU PHE VAL SEQRES 14 B 520 ASN LEU CYS VAL THR ALA GLU THR HIS GLU VAL SER ALA SEQRES 15 B 520 LEU TRP PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR SEQRES 16 B 520 THR ARG ILE ILE SER THR THR ASN GLY GLY GLN GLU ARG SEQRES 17 B 520 LYS PHE VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE SEQRES 18 B 520 MET ASP LEU LEU GLY ASP ARG VAL LYS LEU GLU ARG PRO SEQRES 19 B 520 VAL ILE TYR ILE ASP GLN THR ARG GLU ASN VAL LEU VAL SEQRES 20 B 520 GLU THR LEU ASN HIS GLU MET TYR GLU ALA LYS TYR VAL SEQRES 21 B 520 ILE SER ALA ILE PRO PRO THR LEU GLY MET LYS ILE HIS SEQRES 22 B 520 PHE ASN PRO PRO LEU PRO MET MET ARG ASN GLN MET ILE SEQRES 23 B 520 THR ARG VAL PRO LEU GLY SER VAL ILE LYS CYS ILE VAL SEQRES 24 B 520 TYR TYR LYS GLU PRO PHE TRP ARG LYS LYS ASP TYR CYS SEQRES 25 B 520 GLY THR MET ILE ILE ASP GLY GLU GLU ALA PRO VAL ALA SEQRES 26 B 520 TYR THR LEU ASP ASP THR LYS PRO GLU GLY ASN TYR ALA SEQRES 27 B 520 ALA ILE MET GLY PHE ILE LEU ALA HIS LYS ALA ARG LYS SEQRES 28 B 520 LEU ALA ARG LEU THR LYS GLU GLU ARG LEU LYS LYS LEU SEQRES 29 B 520 CYS GLU LEU TYR ALA LYS VAL LEU GLY SER LEU GLU ALA SEQRES 30 B 520 LEU GLU PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU SEQRES 31 B 520 GLU GLN TYR SER GLY GLY CYS TYR THR THR TYR PHE PRO SEQRES 32 B 520 PRO GLY ILE LEU THR GLN TYR GLY ARG VAL LEU ARG GLN SEQRES 33 B 520 PRO VAL ASP ARG ILE TYR PHE ALA GLY THR GLU THR ALA SEQRES 34 B 520 THR HIS TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA SEQRES 35 B 520 GLY GLU ARG ALA ALA ARG GLU ILE LEU HIS ALA MET GLY SEQRES 36 B 520 LYS ILE PRO GLU ASP GLU ILE TRP GLN SER GLU PRO GLU SEQRES 37 B 520 SER VAL ASP VAL PRO ALA GLN PRO ILE THR THR THR PHE SEQRES 38 B 520 LEU GLU ARG HIS LEU PRO SER VAL PRO GLY LEU LEU ARG SEQRES 39 B 520 LEU ILE GLY LEU THR THR ILE PHE SER ALA THR ALA LEU SEQRES 40 B 520 GLY PHE LEU ALA HIS LYS ARG GLY LEU LEU VAL ARG VAL HET FAD A 600 53 HET ASS A 601 19 HET FAD B 600 53 HET ASS B 601 19 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ASS (E)-N-METHYL-N-[[1-METHYL-5-[3-[1- HETNAM 2 ASS (PHENYLMETHYL)PIPERIDIN-4-YL]PROPOXY]INDOL-2-YL]METHYL] HETNAM 3 ASS PROP-1-EN-1-AMINE HETSYN ASS ASS234, BOUND FORM FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 ASS 2(C29 H39 N3 O) FORMUL 5 HOH *619(H2 O) HELIX 1 1 GLY A 13 SER A 26 1 14 HELIX 2 2 GLN A 65 LEU A 75 1 11 HELIX 3 3 ASN A 108 GLU A 128 1 21 HELIX 4 4 ALA A 133 ALA A 137 5 5 HELIX 5 5 LEU A 139 ASN A 145 1 7 HELIX 6 6 THR A 147 CYS A 156 1 10 HELIX 7 7 THR A 158 THR A 174 1 17 HELIX 8 8 SER A 181 CYS A 192 1 12 HELIX 9 9 GLY A 194 SER A 200 1 7 HELIX 10 10 SER A 214 GLY A 226 1 13 HELIX 11 11 PRO A 265 ILE A 272 5 8 HELIX 12 12 PRO A 279 ILE A 286 1 8 HELIX 13 13 PRO A 304 LYS A 309 1 6 HELIX 14 14 ALA A 346 ALA A 353 1 8 HELIX 15 15 THR A 356 GLY A 373 1 18 HELIX 16 16 SER A 374 GLU A 379 5 6 HELIX 17 17 CYS A 389 GLU A 391 5 3 HELIX 18 18 GLY A 405 GLY A 411 1 7 HELIX 19 19 ARG A 412 LEU A 414 5 3 HELIX 20 20 GLY A 425 ALA A 429 5 5 HELIX 21 21 TYR A 435 MET A 454 1 20 HELIX 22 22 PRO A 458 ILE A 462 5 5 HELIX 23 23 THR A 480 LEU A 486 1 7 HELIX 24 24 SER A 488 THR A 500 1 13 HELIX 25 25 GLY B 13 SER B 26 1 14 HELIX 26 26 GLN B 65 LEU B 75 1 11 HELIX 27 27 ASN B 108 GLU B 128 1 21 HELIX 28 28 ALA B 133 ALA B 137 5 5 HELIX 29 29 LEU B 139 ASN B 145 1 7 HELIX 30 30 THR B 147 CYS B 156 1 10 HELIX 31 31 THR B 158 THR B 174 1 17 HELIX 32 32 SER B 181 GLN B 191 1 11 HELIX 33 33 GLY B 194 SER B 200 1 7 HELIX 34 34 SER B 214 GLY B 226 1 13 HELIX 35 35 PRO B 265 ILE B 272 5 8 HELIX 36 36 PRO B 279 ILE B 286 1 8 HELIX 37 37 PRO B 304 LYS B 309 5 6 HELIX 38 38 ALA B 346 ALA B 353 1 8 HELIX 39 39 THR B 356 GLY B 373 1 18 HELIX 40 40 SER B 374 GLU B 379 5 6 HELIX 41 41 CYS B 389 GLU B 391 5 3 HELIX 42 42 GLY B 405 GLY B 411 1 7 HELIX 43 43 ARG B 412 LEU B 414 5 3 HELIX 44 44 GLY B 425 ALA B 429 5 5 HELIX 45 45 TYR B 435 MET B 454 1 20 HELIX 46 46 PRO B 458 ILE B 462 5 5 HELIX 47 47 THR B 480 LEU B 486 1 7 HELIX 48 48 SER B 488 LEU B 495 1 8 SHEET 1 AA 5 VAL A 229 LYS A 230 0 SHEET 2 AA 5 VAL A 30 LEU A 33 1 O VAL A 32 N LYS A 230 SHEET 3 AA 5 VAL A 7 VAL A 10 1 O VAL A 7 N VAL A 31 SHEET 4 AA 5 TYR A 259 SER A 262 1 O TYR A 259 N VAL A 8 SHEET 5 AA 5 ILE A 421 PHE A 423 1 O TYR A 422 N SER A 262 SHEET 1 AB 2 THR A 45 LEU A 46 0 SHEET 2 AB 2 VAL A 54 ASP A 55 -1 O VAL A 54 N LEU A 46 SHEET 1 AC 2 THR A 79 LYS A 81 0 SHEET 2 AC 2 ARG A 208 PHE A 210 -1 O LYS A 209 N TYR A 80 SHEET 1 AD 7 LYS A 95 PHE A 99 0 SHEET 2 AD 7 ARG A 87 VAL A 92 -1 O LEU A 88 N PHE A 99 SHEET 3 AD 7 TYR A 311 ILE A 317 1 N CYS A 312 O ARG A 87 SHEET 4 AD 7 TYR A 326 ASP A 329 -1 O THR A 327 N MET A 315 SHEET 5 AD 7 ALA A 339 LEU A 345 -1 O MET A 341 N LEU A 328 SHEET 6 AD 7 VAL A 294 TYR A 300 -1 O ILE A 295 N ILE A 344 SHEET 7 AD 7 HIS A 382 ASN A 387 -1 O HIS A 382 N TYR A 300 SHEET 1 AE 4 MET A 254 ALA A 257 0 SHEET 2 AE 4 VAL A 245 THR A 249 -1 O VAL A 245 N ALA A 257 SHEET 3 AE 4 VAL A 235 ASP A 239 -1 N ILE A 236 O GLU A 248 SHEET 4 AE 4 HIS A 273 ASN A 275 1 O HIS A 273 N ILE A 238 SHEET 1 BA 5 VAL B 229 LYS B 230 0 SHEET 2 BA 5 VAL B 30 LEU B 33 1 O VAL B 32 N LYS B 230 SHEET 3 BA 5 VAL B 7 VAL B 10 1 O VAL B 7 N VAL B 31 SHEET 4 BA 5 TYR B 259 SER B 262 1 O TYR B 259 N VAL B 8 SHEET 5 BA 5 ILE B 421 PHE B 423 1 O TYR B 422 N SER B 262 SHEET 1 BB 2 THR B 45 ASN B 48 0 SHEET 2 BB 2 LYS B 52 ASP B 55 -1 O LYS B 52 N ASN B 48 SHEET 1 BC 3 TYR B 60 VAL B 61 0 SHEET 2 BC 3 ARG B 208 PHE B 210 -1 O ARG B 208 N VAL B 61 SHEET 3 BC 3 THR B 79 LYS B 81 -1 O TYR B 80 N LYS B 209 SHEET 1 BD 7 LYS B 95 PHE B 99 0 SHEET 2 BD 7 ARG B 87 VAL B 92 -1 O LEU B 88 N PHE B 99 SHEET 3 BD 7 TYR B 311 ILE B 317 1 N CYS B 312 O ARG B 87 SHEET 4 BD 7 TYR B 326 ASP B 329 -1 O THR B 327 N MET B 315 SHEET 5 BD 7 ALA B 339 LEU B 345 -1 O MET B 341 N LEU B 328 SHEET 6 BD 7 VAL B 294 TYR B 300 -1 O ILE B 295 N ILE B 344 SHEET 7 BD 7 HIS B 382 ASN B 387 -1 O HIS B 382 N TYR B 300 SHEET 1 BE 4 MET B 254 ALA B 257 0 SHEET 2 BE 4 VAL B 245 THR B 249 -1 O VAL B 245 N ALA B 257 SHEET 3 BE 4 VAL B 235 ASP B 239 -1 N ILE B 236 O GLU B 248 SHEET 4 BE 4 HIS B 273 ASN B 275 1 O HIS B 273 N ILE B 238 LINK SG CYS A 397 C8M FAD A 600 1555 1555 1.65 LINK N5 FAD A 600 CAA ASS A 601 1555 1555 1.37 LINK SG CYS B 397 C8M FAD B 600 1555 1555 1.66 LINK N5 FAD B 600 CAA ASS B 601 1555 1555 1.35 CISPEP 1 ASN A 275 PRO A 276 0 -5.38 CISPEP 2 CYS A 397 TYR A 398 0 -4.06 CISPEP 3 ASN B 275 PRO B 276 0 -0.99 CISPEP 4 CYS B 397 TYR B 398 0 -2.55 SITE 1 AC1 44 VAL A 10 GLY A 11 GLY A 13 ILE A 14 SITE 2 AC1 44 SER A 15 LEU A 33 GLU A 34 ALA A 35 SITE 3 AC1 44 ARG A 36 GLY A 40 GLY A 41 ARG A 42 SITE 4 AC1 44 THR A 43 GLY A 58 SER A 59 TYR A 60 SITE 5 AC1 44 LEU A 171 CYS A 172 ILE A 199 GLN A 206 SITE 6 AC1 44 PRO A 234 VAL A 235 ALA A 263 ILE A 264 SITE 7 AC1 44 TYR A 326 PHE A 343 TRP A 388 TYR A 393 SITE 8 AC1 44 CYS A 397 TYR A 398 GLY A 425 THR A 426 SITE 9 AC1 44 GLY A 434 TYR A 435 MET A 436 ALA A 439 SITE 10 AC1 44 HOH A2001 HOH A2002 HOH A2012 HOH A2015 SITE 11 AC1 44 HOH A2021 HOH A2048 HOH A2055 HOH A2187 SITE 1 AC2 43 VAL B 10 GLY B 11 GLY B 13 ILE B 14 SITE 2 AC2 43 SER B 15 LEU B 33 GLU B 34 ALA B 35 SITE 3 AC2 43 ARG B 36 GLY B 40 GLY B 41 ARG B 42 SITE 4 AC2 43 THR B 43 GLY B 58 SER B 59 TYR B 60 SITE 5 AC2 43 LEU B 171 ILE B 199 GLN B 206 PRO B 234 SITE 6 AC2 43 VAL B 235 ALA B 263 ILE B 264 TYR B 326 SITE 7 AC2 43 PHE B 343 TRP B 388 TYR B 393 CYS B 397 SITE 8 AC2 43 TYR B 398 GLY B 425 THR B 426 GLY B 434 SITE 9 AC2 43 TYR B 435 MET B 436 ALA B 439 HOH B2002 SITE 10 AC2 43 HOH B2003 HOH B2021 HOH B2026 HOH B2035 SITE 11 AC2 43 HOH B2064 HOH B2073 HOH B2221 CRYST1 132.060 223.250 86.350 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011581 0.00000 MTRIX1 1 -0.529800 -0.494900 -0.688800 139.90000 1 MTRIX2 1 -0.496700 -0.477300 0.724900 208.40000 1 MTRIX3 1 -0.687500 0.726200 0.007032 -54.54000 1 MASTER 412 0 4 48 41 0 22 9 0 0 0 80 END