HEADER TRANSCRIPTION 25-AUG-13 4C3L TITLE STRUCTURE OF WILDTYPE PII FROM S. ELONGATUS AT HIGH RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PII SIGNAL TRANSDUCING PROTEIN, PII; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 32046; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,K.FORCHHAMMER REVDAT 5 03-DEC-14 4C3L 1 REMARK REVDAT 4 16-APR-14 4C3L 1 JRNL REVDAT 3 19-FEB-14 4C3L 1 JRNL REVDAT 2 05-FEB-14 4C3L 1 REMARK REVDAT 1 15-JAN-14 4C3L 0 JRNL AUTH K.ZETH,O.FOKINA,K.FORCHHAMMER JRNL TITL STRUCTURAL BASIS AND TARGET-SPECIFIC MODULATION OF ADP JRNL TITL 2 SENSING BY THE SYNECHOCOCCUS ELONGATUS PII SIGNALING JRNL TITL 3 PROTEIN. JRNL REF J.BIOL.CHEM. V. 289 8960 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24519945 JRNL DOI 10.1074/JBC.M113.536557 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.600 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.846 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.01 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.93 REMARK 3 NUMBER OF REFLECTIONS : 16524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1924 REMARK 3 R VALUE (WORKING SET) : 0.1918 REMARK 3 FREE R VALUE : 0.2047 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8534 - 2.9069 1.00 2735 143 0.1792 0.1747 REMARK 3 2 2.9069 - 2.3074 1.00 2630 139 0.2020 0.2453 REMARK 3 3 2.3074 - 2.0158 1.00 2613 137 0.1789 0.2071 REMARK 3 4 2.0158 - 1.8315 1.00 2569 136 0.1960 0.2440 REMARK 3 5 1.8315 - 1.7003 1.00 2586 136 0.2455 0.2433 REMARK 3 6 1.7003 - 1.6000 1.00 2565 135 0.3042 0.3394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.19 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 692 REMARK 3 ANGLE : 1.484 925 REMARK 3 CHIRALITY : 0.110 118 REMARK 3 PLANARITY : 0.007 113 REMARK 3 DIHEDRAL : 14.757 268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4311 18.8155 6.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.2593 T22: 0.3393 REMARK 3 T33: 0.3177 T12: 0.0436 REMARK 3 T13: -0.0105 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 7.5787 L22: 8.5051 REMARK 3 L33: 7.8658 L12: -3.3255 REMARK 3 L13: -2.7475 L23: 3.5127 REMARK 3 S TENSOR REMARK 3 S11: -0.2494 S12: -0.7634 S13: 0.3460 REMARK 3 S21: 0.9353 S22: 0.2204 S23: -0.0109 REMARK 3 S31: 0.1513 S32: -0.1846 S33: -0.0890 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 13 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9571 11.2184 13.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.6538 T22: 0.7842 REMARK 3 T33: 0.7024 T12: 0.0945 REMARK 3 T13: 0.2738 T23: 0.1121 REMARK 3 L TENSOR REMARK 3 L11: 8.7873 L22: 3.5834 REMARK 3 L33: 2.8454 L12: -1.7503 REMARK 3 L13: -2.7213 L23: -0.1057 REMARK 3 S TENSOR REMARK 3 S11: -0.4363 S12: -1.3786 S13: -0.1604 REMARK 3 S21: 1.7178 S22: 0.8325 S23: 0.8336 REMARK 3 S31: 0.2050 S32: -0.9890 S33: 0.5259 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 29 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0659 24.1113 15.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.5032 T22: 0.4289 REMARK 3 T33: 0.3173 T12: 0.0294 REMARK 3 T13: -0.0115 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 5.2020 L22: 7.2014 REMARK 3 L33: 4.7771 L12: -2.5453 REMARK 3 L13: -1.1836 L23: 1.5701 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: -0.7152 S13: 0.9027 REMARK 3 S21: 1.4935 S22: 0.0436 S23: -0.1930 REMARK 3 S31: -0.8177 S32: -0.1039 S33: -0.1730 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 56 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7585 16.8957 7.8917 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.2064 REMARK 3 T33: 0.2012 T12: 0.0021 REMARK 3 T13: 0.0086 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 5.3230 L22: 4.1083 REMARK 3 L33: 9.8491 L12: -2.3325 REMARK 3 L13: -1.3204 L23: 3.5970 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.4383 S13: 0.0392 REMARK 3 S21: 0.4373 S22: 0.1918 S23: 0.0790 REMARK 3 S31: 0.0306 S32: 0.1497 S33: -0.1467 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 67 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9125 13.5237 2.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.2494 REMARK 3 T33: 0.4455 T12: -0.0250 REMARK 3 T13: -0.0025 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 6.7548 L22: 5.0779 REMARK 3 L33: 4.1645 L12: -2.5616 REMARK 3 L13: -2.1365 L23: 0.8656 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.0626 S13: -0.5535 REMARK 3 S21: 0.0476 S22: 0.0932 S23: 0.4965 REMARK 3 S31: 0.4826 S32: -0.4625 S33: 0.0173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 85 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3922 22.2606 3.8933 REMARK 3 T TENSOR REMARK 3 T11: 0.2237 T22: 0.2583 REMARK 3 T33: 0.2256 T12: 0.0004 REMARK 3 T13: 0.0140 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.7519 L22: 2.5462 REMARK 3 L33: 2.1766 L12: 1.5175 REMARK 3 L13: 0.6082 L23: -1.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.3344 S12: -0.3385 S13: 0.3077 REMARK 3 S21: 0.3099 S22: -0.1876 S23: 0.1873 REMARK 3 S31: -0.3240 S32: -0.4512 S33: -0.4268 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 96 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9292 2.2767 1.7686 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.1444 REMARK 3 T33: 0.2720 T12: -0.0111 REMARK 3 T13: -0.0178 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 4.2620 L22: 8.0595 REMARK 3 L33: 4.0039 L12: -2.7562 REMARK 3 L13: 1.0195 L23: -2.0206 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: -0.1527 S13: -0.1187 REMARK 3 S21: 0.3336 S22: 0.1488 S23: -0.0221 REMARK 3 S31: 0.0807 S32: -0.1704 S33: -0.1717 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-13. REMARK 100 THE PDBE ID CODE IS EBI-58171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 33.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.1 REMARK 200 R MERGE (I) : 0.03 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.8 REMARK 200 R MERGE FOR SHELL (I) : 0.34 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4AFF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.0 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 20% PEG8000, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 32.84650 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 56.89181 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 65.69300 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2010 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 ARG A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 THR A 52 REMARK 465 VAL A 53 REMARK 465 LYS A 107 REMARK 465 ASN A 108 REMARK 465 ALA A 109 REMARK 465 ASP A 110 REMARK 465 ALA A 111 REMARK 465 ILE A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 11 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 A PG4 A 1108 O5 A PG4 A 1108 4555 1.89 REMARK 500 O1 A PG4 A 1108 O5 B PG4 A 1108 4555 1.89 REMARK 500 C1 A PG4 A 1108 C8 A PG4 A 1108 4555 1.99 REMARK 500 C1 A PG4 A 1108 O5 A PG4 A 1108 4555 0.75 REMARK 500 C1 A PG4 A 1108 HO5A PG4 A 1108 4555 0.67 REMARK 500 C1 A PG4 A 1108 C8 B PG4 A 1108 4555 1.99 REMARK 500 C1 A PG4 A 1108 O5 B PG4 A 1108 4555 0.75 REMARK 500 C1 A PG4 A 1108 HO5B PG4 A 1108 4555 0.67 REMARK 500 C2 A PG4 A 1108 C7 A PG4 A 1108 4555 1.85 REMARK 500 C2 A PG4 A 1108 C7 B PG4 A 1108 4555 1.85 REMARK 500 C2 A PG4 A 1108 C8 A PG4 A 1108 4555 1.34 REMARK 500 C2 A PG4 A 1108 O5 A PG4 A 1108 4555 0.80 REMARK 500 C2 A PG4 A 1108 HO5A PG4 A 1108 4555 1.58 REMARK 500 C2 A PG4 A 1108 C8 B PG4 A 1108 4555 1.34 REMARK 500 C2 A PG4 A 1108 O5 B PG4 A 1108 4555 0.79 REMARK 500 C2 A PG4 A 1108 HO5B PG4 A 1108 4555 1.58 REMARK 500 O2 A PG4 A 1108 O4 A PG4 A 1108 4555 1.89 REMARK 500 O2 A PG4 A 1108 C7 A PG4 A 1108 4555 0.94 REMARK 500 O2 A PG4 A 1108 O4 B PG4 A 1108 4555 1.89 REMARK 500 O2 A PG4 A 1108 C7 B PG4 A 1108 4555 0.94 REMARK 500 O2 A PG4 A 1108 C8 A PG4 A 1108 4555 0.55 REMARK 500 O2 A PG4 A 1108 O5 A PG4 A 1108 4555 1.72 REMARK 500 O2 A PG4 A 1108 C8 B PG4 A 1108 4555 0.55 REMARK 500 O2 A PG4 A 1108 O5 B PG4 A 1108 4555 1.72 REMARK 500 C3 A PG4 A 1108 C6 A PG4 A 1108 4555 1.86 REMARK 500 C3 A PG4 A 1108 O4 A PG4 A 1108 4555 1.06 REMARK 500 C3 A PG4 A 1108 C7 A PG4 A 1108 4555 0.55 REMARK 500 C3 A PG4 A 1108 C6 B PG4 A 1108 4555 1.86 REMARK 500 C3 A PG4 A 1108 O4 B PG4 A 1108 4555 1.07 REMARK 500 C3 A PG4 A 1108 C7 B PG4 A 1108 4555 0.55 REMARK 500 C3 A PG4 A 1108 C8 A PG4 A 1108 4555 1.97 REMARK 500 C3 A PG4 A 1108 C8 B PG4 A 1108 4555 1.97 REMARK 500 C4 A PG4 A 1108 C5 A PG4 A 1108 4555 1.92 REMARK 500 C4 A PG4 A 1108 C6 A PG4 A 1108 4555 1.14 REMARK 500 C4 A PG4 A 1108 O4 A PG4 A 1108 4555 0.49 REMARK 500 C4 A PG4 A 1108 C7 A PG4 A 1108 4555 1.90 REMARK 500 C4 A PG4 A 1108 C5 B PG4 A 1108 4555 1.93 REMARK 500 C4 A PG4 A 1108 C6 B PG4 A 1108 4555 1.14 REMARK 500 C4 A PG4 A 1108 O4 B PG4 A 1108 4555 0.49 REMARK 500 C4 A PG4 A 1108 C7 B PG4 A 1108 4555 1.90 REMARK 500 O3 A PG4 A 1108 O3 A PG4 A 1108 4555 1.92 REMARK 500 O3 A PG4 A 1108 C5 A PG4 A 1108 4555 1.13 REMARK 500 O3 A PG4 A 1108 C6 A PG4 A 1108 4555 0.51 REMARK 500 O3 A PG4 A 1108 O4 A PG4 A 1108 4555 1.79 REMARK 500 O3 A PG4 A 1108 O3 B PG4 A 1108 4555 1.92 REMARK 500 O3 A PG4 A 1108 C5 B PG4 A 1108 4555 1.13 REMARK 500 O3 A PG4 A 1108 C6 B PG4 A 1108 4555 0.51 REMARK 500 O3 A PG4 A 1108 O4 B PG4 A 1108 4555 1.79 REMARK 500 C5 A PG4 A 1108 C5 A PG4 A 1108 4555 0.47 REMARK 500 C5 A PG4 A 1108 C6 A PG4 A 1108 4555 1.90 REMARK 500 REMARK 500 THIS ENTRY HAS 110 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 -72.98 -106.17 REMARK 500 LEU A 13 -72.12 -58.06 REMARK 500 GLU A 85 -78.19 -88.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND ARE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): THESE HAVE BEEN REPOSITIONED REMARK 525 BY APPLYING THE SYMMETRY TRANSFORMATION INDICATED. REMARK 525 REMARK 525 M RES CSSEQI ORIGINAL COORDINATES SYMMETRY TRANS. DIST. REMARK 525 X Y Z REMARK 525 HOH S 45 31.369 3.120 7.708 003 665 2.41 REMARK 525 HOH S 28 27.722 25.917 4.747 002 655 2.80 REMARK 525 HOH S 5 29.690 -1.392 2.501 005 555 3.38 REMARK 525 HOH S 32 28.782 3.952 7.012 003 665 3.21 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C3K RELATED DB: PDB REMARK 900 STRUCTURE OF MIXED PII-ADP COMPLEXES FROM S. ELONGATUS REMARK 900 RELATED ID: 4C3M RELATED DB: PDB REMARK 900 STRUCTURE OF WILDTYPE PII FROM S. ELONGATUS AT MEDIUM REMARK 900 RESOLUTION DBREF 4C3L A 1 112 UNP P0A3F4 GLNB_SYNE7 1 112 SEQRES 1 A 112 MET LYS LYS ILE GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 A 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 A 112 VAL GLU PHE LEU GLN LYS LEU LYS LEU GLU ILE VAL VAL SEQRES 6 A 112 GLU ASP ALA GLN VAL ASP THR VAL ILE ASP LYS ILE VAL SEQRES 7 A 112 ALA ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL SER PRO VAL ASP GLN THR ILE ARG ILE ARG THR SEQRES 9 A 112 GLY GLU LYS ASN ALA ASP ALA ILE HET CL A1107 1 HET PG4 A1108 30 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION FORMUL 4 PG4 C8 H18 O5 FORMUL 5 CL CL 1- FORMUL 6 HOH *64(H2 O) HELIX 1 1 LYS A 12 ALA A 23 1 12 HELIX 2 2 GLU A 66 ALA A 68 5 3 HELIX 3 3 GLN A 69 GLU A 85 1 17 SHEET 1 AA 4 THR A 29 GLY A 35 0 SHEET 2 AA 4 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 3 AA 4 LYS A 2 ILE A 8 -1 O LYS A 2 N VAL A 65 SHEET 4 AA 4 GLY A 89 PRO A 95 -1 O LYS A 90 N ILE A 7 CISPEP 1 GLU A 85 ILE A 86 0 -4.22 SITE 1 AC1 4 VAL A 64 LYS A 90 PHE A 92 ARG A 101 SITE 1 AC2 3 ASP A 71 ARG A 82 GLN A 98 CRYST1 65.693 65.693 49.202 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015222 0.008789 0.000000 0.00000 SCALE2 0.000000 0.017577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020324 0.00000 MASTER 485 0 2 3 4 0 2 6 0 0 0 9 END