HEADER HYDROLASE 11-AUG-13 4C1B TITLE ESTERASE DOMAIN OF THE ZFL2-1 ORF1 PROTEIN FROM THE ZEBRAFISH ZFL2-1 TITLE 2 RETROTRANSPOSON COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF1-ENCODED PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: SGNH ESTERASE DOMAIN, RESIDUES 136-302; COMPND 5 SYNONYM: ZFL2-1 ORF1P; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM41P; SOURCE 10 OTHER_DETAILS: SYNTHETIC CODON-OPTIMIZED DNA SEQUENCE KEYWDS HYDROLASE, RETROTRANSPOSITION, RNA-BINDING, MEMBRANE-BINDING, LIPID- KEYWDS 2 BINDING, SELF-ASSOCIATION EXPDTA X-RAY DIFFRACTION AUTHOR A.M.SCHNEIDER,O.WEICHENRIEDER REVDAT 3 18-OCT-17 4C1B 1 REMARK REVDAT 2 25-DEC-13 4C1B 1 JRNL REVDAT 1 11-SEP-13 4C1B 0 JRNL AUTH A.M.SCHNEIDER,S.SCHMIDT,S.JONAS,B.VOLLMER,E.KHAZINA, JRNL AUTH 2 O.WEICHENRIEDER JRNL TITL STRUCTURE AND PROPERTIES OF THE ESTERASE FROM NON-LTR JRNL TITL 2 RETROTRANSPOSONS SUGGEST A ROLE FOR LIPIDS IN JRNL TITL 3 RETROTRANSPOSITION. JRNL REF NUCLEIC ACIDS RES. V. 41 10563 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 24003030 JRNL DOI 10.1093/NAR/GKT786 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7170 - 5.1993 1.00 2618 137 0.1570 0.1920 REMARK 3 2 5.1993 - 4.1277 1.00 2570 141 0.1441 0.1686 REMARK 3 3 4.1277 - 3.6062 1.00 2574 132 0.1588 0.2325 REMARK 3 4 3.6062 - 3.2766 1.00 2552 157 0.1777 0.2277 REMARK 3 5 3.2766 - 3.0418 1.00 2578 129 0.1908 0.2412 REMARK 3 6 3.0418 - 2.8625 1.00 2558 119 0.1869 0.2163 REMARK 3 7 2.8625 - 2.7191 1.00 2536 155 0.1803 0.2324 REMARK 3 8 2.7191 - 2.6008 1.00 2583 137 0.1967 0.2225 REMARK 3 9 2.6008 - 2.5007 1.00 2533 137 0.2190 0.2807 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4031 REMARK 3 ANGLE : 1.182 5460 REMARK 3 CHIRALITY : 0.060 623 REMARK 3 PLANARITY : 0.006 699 REMARK 3 DIHEDRAL : 14.140 1519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 132 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4884 72.1829 -7.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.3982 REMARK 3 T33: 0.3610 T12: 0.0590 REMARK 3 T13: -0.0032 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 2.8746 L22: 1.5303 REMARK 3 L33: 0.9753 L12: 0.3272 REMARK 3 L13: -0.7561 L23: 0.2228 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: -0.3414 S13: 0.4466 REMARK 3 S21: 0.2146 S22: 0.0956 S23: 0.2639 REMARK 3 S31: -0.2912 S32: -0.3924 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 201 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2545 44.3219 9.4634 REMARK 3 T TENSOR REMARK 3 T11: 0.3692 T22: 0.2601 REMARK 3 T33: 0.3388 T12: 0.0257 REMARK 3 T13: 0.0598 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 3.9279 L22: 3.7739 REMARK 3 L33: 2.1259 L12: 0.3218 REMARK 3 L13: -0.6802 L23: 1.2377 REMARK 3 S TENSOR REMARK 3 S11: -0.2513 S12: -0.1746 S13: -0.3952 REMARK 3 S21: 0.3022 S22: 0.0845 S23: 0.1596 REMARK 3 S31: 0.1400 S32: 0.0519 S33: -0.0061 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 135 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8001 38.0323 9.9574 REMARK 3 T TENSOR REMARK 3 T11: 0.4295 T22: 0.4207 REMARK 3 T33: 0.6522 T12: -0.0279 REMARK 3 T13: 0.1227 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.9202 L22: 2.8752 REMARK 3 L33: 2.3146 L12: 0.2448 REMARK 3 L13: 0.4609 L23: 2.5218 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: -0.3464 S13: -0.7030 REMARK 3 S21: 0.3748 S22: 0.0551 S23: 0.6364 REMARK 3 S31: 0.6415 S32: -0.6022 S33: -0.0079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 238 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6908 77.3539 -12.7442 REMARK 3 T TENSOR REMARK 3 T11: 0.3658 T22: 0.2897 REMARK 3 T33: 0.3061 T12: 0.0391 REMARK 3 T13: -0.0889 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 3.4460 L22: 1.0545 REMARK 3 L33: 2.9909 L12: 0.7309 REMARK 3 L13: 1.7284 L23: -0.5704 REMARK 3 S TENSOR REMARK 3 S11: -0.2276 S12: 0.0171 S13: 0.4924 REMARK 3 S21: -0.0593 S22: 0.0870 S23: 0.0976 REMARK 3 S31: -0.4785 S32: 0.0008 S33: -0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C AND (RESID 135 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.3093 74.8599 -32.7893 REMARK 3 T TENSOR REMARK 3 T11: 0.6967 T22: 0.9445 REMARK 3 T33: 0.4902 T12: 0.0508 REMARK 3 T13: 0.0303 T23: 0.2371 REMARK 3 L TENSOR REMARK 3 L11: 1.6841 L22: 1.2880 REMARK 3 L33: 1.5468 L12: -0.6504 REMARK 3 L13: 0.9965 L23: 0.5964 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.9174 S13: 0.5047 REMARK 3 S21: -0.7263 S22: -0.1309 S23: 0.2876 REMARK 3 S31: 0.0961 S32: 0.1345 S33: -0.0047 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN C AND (RESID 201 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4201 36.8792 -21.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.4300 T22: 0.5898 REMARK 3 T33: 0.5501 T12: -0.0035 REMARK 3 T13: -0.0696 T23: -0.1886 REMARK 3 L TENSOR REMARK 3 L11: 2.4839 L22: 2.2522 REMARK 3 L33: 2.8234 L12: -0.3256 REMARK 3 L13: 0.0263 L23: 0.3522 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.4880 S13: -0.5976 REMARK 3 S21: -0.5274 S22: -0.1222 S23: 0.6241 REMARK 3 S31: -0.1767 S32: -0.3872 S33: -0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE REFINED IN THE RIDING REMARK 3 POSITIONS. THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN B, REMARK 3 RESIDUES 132 TO 134. CHAIN C, RESIDUES 132 TO 134, 151 TO 155, REMARK 3 180 TO 183 AND 302. REMARK 4 REMARK 4 4C1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 1.0397 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: GOLD SITES WERE IDENTIFIED BY SIRAS, USING THE SECOND REMARK 200 DATASET, COLLECTED AT 1.0397 A, PEAK DATA AT THE AU LIII-EDGE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-HEPES PH=7.0, 0.5% REMARK 280 JEFFAMINE, 1.1M NA-MALONATE., PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.63000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.63000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.77500 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.85000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 55.63000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 86.77500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.26000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.26000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 132 REMARK 465 PRO B 133 REMARK 465 ALA B 134 REMARK 465 GLY C 132 REMARK 465 PRO C 133 REMARK 465 ALA C 134 REMARK 465 ALA C 151 REMARK 465 SER C 152 REMARK 465 SER C 153 REMARK 465 LYS C 154 REMARK 465 GLY C 155 REMARK 465 GLY C 180 REMARK 465 ALA C 181 REMARK 465 ALA C 182 REMARK 465 GLU C 183 REMARK 465 ILE C 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 149 O GLU C 257 8555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 236 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 142 -168.01 -75.47 REMARK 500 GLU A 183 40.53 -94.42 REMARK 500 SER A 220 81.05 -151.46 REMARK 500 ARG A 236 -156.10 -112.37 REMARK 500 LEU A 281 -60.09 -136.20 REMARK 500 LYS B 154 38.46 71.10 REMARK 500 SER B 220 81.40 -170.97 REMARK 500 LEU B 281 -47.18 -130.63 REMARK 500 ARG C 149 110.08 -162.59 REMARK 500 SER C 220 67.58 -155.24 REMARK 500 ARG C 236 -161.46 -102.48 REMARK 500 LEU C 281 -58.67 -137.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C1A RELATED DB: PDB REMARK 900 COILED COIL DOMAIN OF THE ZFL2-1 ORF1 PROTEIN FROM THE ZEBRAFISH REMARK 900 ZFL2-1 RETROTRANSPOSON REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FOUR N-TERMINAL RESIDUES REMAIN FROM THE EXPRESSION REMARK 999 TAG. DBREF 4C1B A 136 302 UNP Q3LG57 Q3LG57_DANRE 136 302 DBREF 4C1B B 136 302 UNP Q3LG57 Q3LG57_DANRE 136 302 DBREF 4C1B C 136 302 UNP Q3LG57 Q3LG57_DANRE 136 302 SEQADV 4C1B GLY A 132 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B PRO A 133 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B ALA A 134 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B MET A 135 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B GLY B 132 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B PRO B 133 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B ALA B 134 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B MET B 135 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B GLY C 132 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B PRO C 133 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B ALA C 134 UNP Q3LG57 EXPRESSION TAG SEQADV 4C1B MET C 135 UNP Q3LG57 EXPRESSION TAG SEQRES 1 A 171 GLY PRO ALA MET ASP VAL ALA ILE ILE GLY ASP SER ILE SEQRES 2 A 171 VAL ARG HIS VAL ARG ALA ALA SER SER LYS GLY ASN LYS SEQRES 3 A 171 VAL ARG THR PHE CYS PHE PRO GLY ALA ARG VAL LYS ASN SEQRES 4 A 171 ILE SER THR GLN ILE PRO THR ILE LEU GLY ALA ALA GLU SEQRES 5 A 171 SER PRO GLY ALA VAL VAL LEU HIS VAL GLY THR ASN ASP SEQRES 6 A 171 THR GLY LEU ARG GLN SER GLU ILE LEU LYS LYS ASP PHE SEQRES 7 A 171 ARG SER LEU ILE GLU THR VAL ARG ARG THR SER PRO ALA SEQRES 8 A 171 THR GLN ILE ILE VAL SER GLY PRO LEU PRO THR TYR ARG SEQRES 9 A 171 ARG GLY ASN GLU ARG PHE SER ARG LEU LEU ALA LEU ASN SEQRES 10 A 171 GLU TRP LEU ILE THR TRP CYS LYS GLU GLN LYS LEU LEU SEQRES 11 A 171 PHE ALA ASN ASN TRP ASN LEU PHE TRP GLU ARG PRO ARG SEQRES 12 A 171 LEU PHE ARG PRO ASP GLY LEU HIS PRO SER ARG ALA GLY SEQRES 13 A 171 ALA GLU LEU LEU SER ASP ASN ILE SER ARG LEU LEU ARG SEQRES 14 A 171 THR ILE SEQRES 1 B 171 GLY PRO ALA MET ASP VAL ALA ILE ILE GLY ASP SER ILE SEQRES 2 B 171 VAL ARG HIS VAL ARG ALA ALA SER SER LYS GLY ASN LYS SEQRES 3 B 171 VAL ARG THR PHE CYS PHE PRO GLY ALA ARG VAL LYS ASN SEQRES 4 B 171 ILE SER THR GLN ILE PRO THR ILE LEU GLY ALA ALA GLU SEQRES 5 B 171 SER PRO GLY ALA VAL VAL LEU HIS VAL GLY THR ASN ASP SEQRES 6 B 171 THR GLY LEU ARG GLN SER GLU ILE LEU LYS LYS ASP PHE SEQRES 7 B 171 ARG SER LEU ILE GLU THR VAL ARG ARG THR SER PRO ALA SEQRES 8 B 171 THR GLN ILE ILE VAL SER GLY PRO LEU PRO THR TYR ARG SEQRES 9 B 171 ARG GLY ASN GLU ARG PHE SER ARG LEU LEU ALA LEU ASN SEQRES 10 B 171 GLU TRP LEU ILE THR TRP CYS LYS GLU GLN LYS LEU LEU SEQRES 11 B 171 PHE ALA ASN ASN TRP ASN LEU PHE TRP GLU ARG PRO ARG SEQRES 12 B 171 LEU PHE ARG PRO ASP GLY LEU HIS PRO SER ARG ALA GLY SEQRES 13 B 171 ALA GLU LEU LEU SER ASP ASN ILE SER ARG LEU LEU ARG SEQRES 14 B 171 THR ILE SEQRES 1 C 171 GLY PRO ALA MET ASP VAL ALA ILE ILE GLY ASP SER ILE SEQRES 2 C 171 VAL ARG HIS VAL ARG ALA ALA SER SER LYS GLY ASN LYS SEQRES 3 C 171 VAL ARG THR PHE CYS PHE PRO GLY ALA ARG VAL LYS ASN SEQRES 4 C 171 ILE SER THR GLN ILE PRO THR ILE LEU GLY ALA ALA GLU SEQRES 5 C 171 SER PRO GLY ALA VAL VAL LEU HIS VAL GLY THR ASN ASP SEQRES 6 C 171 THR GLY LEU ARG GLN SER GLU ILE LEU LYS LYS ASP PHE SEQRES 7 C 171 ARG SER LEU ILE GLU THR VAL ARG ARG THR SER PRO ALA SEQRES 8 C 171 THR GLN ILE ILE VAL SER GLY PRO LEU PRO THR TYR ARG SEQRES 9 C 171 ARG GLY ASN GLU ARG PHE SER ARG LEU LEU ALA LEU ASN SEQRES 10 C 171 GLU TRP LEU ILE THR TRP CYS LYS GLU GLN LYS LEU LEU SEQRES 11 C 171 PHE ALA ASN ASN TRP ASN LEU PHE TRP GLU ARG PRO ARG SEQRES 12 C 171 LEU PHE ARG PRO ASP GLY LEU HIS PRO SER ARG ALA GLY SEQRES 13 C 171 ALA GLU LEU LEU SER ASP ASN ILE SER ARG LEU LEU ARG SEQRES 14 C 171 THR ILE FORMUL 4 HOH *74(H2 O) HELIX 1 1 VAL A 168 LEU A 179 1 12 HELIX 2 2 GLN A 201 THR A 219 1 19 HELIX 3 3 ASN A 238 GLU A 257 1 20 HELIX 4 4 TRP A 266 PHE A 269 1 4 HELIX 5 5 ARG A 285 LEU A 299 1 15 HELIX 6 6 VAL B 168 ILE B 178 1 11 HELIX 7 7 THR B 194 THR B 197 1 4 HELIX 8 8 GLN B 201 THR B 219 1 19 HELIX 9 9 ASN B 238 GLU B 257 1 20 HELIX 10 10 ASN B 265 PHE B 269 1 5 HELIX 11 11 ARG B 285 LEU B 299 1 15 HELIX 12 12 VAL C 168 THR C 173 1 6 HELIX 13 13 ILE C 175 ILE C 178 1 4 HELIX 14 14 GLN C 201 THR C 219 1 19 HELIX 15 15 ASN C 238 GLU C 257 1 20 HELIX 16 16 TRP C 266 PHE C 269 1 4 HELIX 17 17 ARG C 285 ARG C 300 1 16 SHEET 1 AA 5 VAL A 158 CYS A 162 0 SHEET 2 AA 5 VAL A 137 GLY A 141 1 O VAL A 137 N ARG A 159 SHEET 3 AA 5 ALA A 187 HIS A 191 1 O ALA A 187 N ALA A 138 SHEET 4 AA 5 GLN B 224 SER B 228 1 O GLN B 224 N VAL A 188 SHEET 5 AA 5 LEU B 261 ALA B 263 1 O LEU B 261 N VAL B 227 SHEET 1 AB 5 LEU A 261 ALA A 263 0 SHEET 2 AB 5 GLN A 224 SER A 228 1 O ILE A 225 N LEU A 261 SHEET 3 AB 5 ALA B 187 HIS B 191 1 O VAL B 188 N ILE A 226 SHEET 4 AB 5 VAL B 137 GLY B 141 1 O ALA B 138 N VAL B 189 SHEET 5 AB 5 VAL B 158 CYS B 162 1 O ARG B 159 N ILE B 139 SHEET 1 CA 3 LYS C 157 CYS C 162 0 SHEET 2 CA 3 ASP C 136 GLY C 141 1 O VAL C 137 N ARG C 159 SHEET 3 CA 3 ALA C 187 HIS C 191 1 O ALA C 187 N ALA C 138 SHEET 1 CB 2 ILE C 226 SER C 228 0 SHEET 2 CB 2 LEU C 261 ALA C 263 1 O LEU C 261 N VAL C 227 CRYST1 111.260 111.260 115.700 90.00 90.00 90.00 I 41 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008643 0.00000 MASTER 424 0 0 17 15 0 0 6 0 0 0 42 END