HEADER TRANSCRIPTION 02-AUG-13 4C0H TITLE EXTENDED INTERFACE BETWEEN PCF11P AND CLP1P AND STRUCTURAL BASIS FOR TITLE 2 ATP LOSS IN GLY135ARG POINT MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA CLEAVAGE AND POLYADENYLATION FACTOR CLP1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLP1P; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PCF11P; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES 454-563; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTION, 3' END MRNA PROCESSING, MUTANT EXPDTA X-RAY DIFFRACTION AUTHOR A.F.DUPIN,S.FRIBOURG REVDAT 3 25-APR-18 4C0H 1 SOURCE JRNL REMARK REVDAT 2 30-APR-14 4C0H 1 JRNL REVDAT 1 19-FEB-14 4C0H 0 JRNL AUTH A.F.DUPIN,S.FRIBOURG JRNL TITL STRUCTURAL BASIS FOR ATP LOSS BY CLP1P IN A G135R MUTANT JRNL TITL 2 PROTEIN. JRNL REF BIOCHIMIE V. 101 203 2014 JRNL REFN ISSN 1638-6183 JRNL PMID 24508575 JRNL DOI 10.1016/J.BIOCHI.2014.01.017 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2188 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3036 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2770 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2909 REMARK 3 BIN R VALUE (WORKING SET) : 0.2757 REMARK 3 BIN FREE R VALUE : 0.3086 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.99510 REMARK 3 B22 (A**2) : -8.14110 REMARK 3 B33 (A**2) : 3.14600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.421 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.355 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.241 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.371 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.247 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7474 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10162 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2600 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 201 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1047 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7474 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 997 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8036 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.38 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 39.4756 25.9623 68.1305 REMARK 3 T TENSOR REMARK 3 T11: 0.2399 T22: 0.1857 REMARK 3 T33: 0.2764 T12: 0.0275 REMARK 3 T13: -0.0296 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.7847 L22: 0.9520 REMARK 3 L33: 1.6750 L12: 0.2055 REMARK 3 L13: 0.2551 L23: 0.2964 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: -0.1022 S13: 0.1254 REMARK 3 S21: -0.3190 S22: -0.0313 S23: 0.0819 REMARK 3 S31: -0.1173 S32: -0.1382 S33: 0.1477 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.460 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.07 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.69750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.03150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.80450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.03150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.69750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.80450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 ILE A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 HIS A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 LEU A 16 REMARK 465 ILE A 17 REMARK 465 THR A 18 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 VAL A 313 REMARK 465 SER A 314 REMARK 465 ALA A 315 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 ILE B 7 REMARK 465 ASP B 8 REMARK 465 GLU B 9 REMARK 465 HIS B 10 REMARK 465 THR B 11 REMARK 465 THR B 12 REMARK 465 SER B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 LEU B 16 REMARK 465 ILE B 17 REMARK 465 THR B 18 REMARK 465 GLY C 454 REMARK 465 SER C 455 REMARK 465 GLN C 456 REMARK 465 ASN C 457 REMARK 465 THR C 458 REMARK 465 ALA C 459 REMARK 465 ASN C 460 REMARK 465 THR C 461 REMARK 465 GLY C 462 REMARK 465 ILE C 463 REMARK 465 LEU C 468 REMARK 465 ASN C 469 REMARK 465 THR C 470 REMARK 465 THR C 471 REMARK 465 THR C 472 REMARK 465 THR C 473 REMARK 465 ARG C 474 REMARK 465 LYS C 475 REMARK 465 THR C 500 REMARK 465 LYS C 501 REMARK 465 HIS C 502 REMARK 465 LYS C 503 REMARK 465 ASN C 504 REMARK 465 ASP C 505 REMARK 465 TYR C 506 REMARK 465 THR C 507 REMARK 465 ASP C 508 REMARK 465 PRO C 509 REMARK 465 HIS C 510 REMARK 465 ALA C 511 REMARK 465 ASN C 512 REMARK 465 LYS C 513 REMARK 465 ASN C 514 REMARK 465 ILE C 515 REMARK 465 ASP C 516 REMARK 465 LYS C 517 REMARK 465 SER C 518 REMARK 465 ALA C 519 REMARK 465 LEU C 520 REMARK 465 ASN C 521 REMARK 465 ILE C 522 REMARK 465 HIS C 523 REMARK 465 ALA C 524 REMARK 465 ASP C 525 REMARK 465 GLU C 526 REMARK 465 ASN C 527 REMARK 465 ASP C 528 REMARK 465 GLU C 529 REMARK 465 GLY C 530 REMARK 465 SER C 531 REMARK 465 VAL C 532 REMARK 465 ASP C 533 REMARK 465 ASN C 534 REMARK 465 THR C 535 REMARK 465 LEU C 536 REMARK 465 GLY C 537 REMARK 465 SER C 538 REMARK 465 ASP C 539 REMARK 465 ARG C 540 REMARK 465 SER C 541 REMARK 465 ASN C 542 REMARK 465 GLU C 543 REMARK 465 LEU C 544 REMARK 465 GLU C 545 REMARK 465 ILE C 546 REMARK 465 ARG C 547 REMARK 465 GLY C 548 REMARK 465 LYS C 549 REMARK 465 TYR C 550 REMARK 465 VAL C 551 REMARK 465 VAL C 552 REMARK 465 VAL C 553 REMARK 465 PRO C 554 REMARK 465 GLU C 555 REMARK 465 THR C 556 REMARK 465 SER C 557 REMARK 465 GLN C 558 REMARK 465 ASP C 559 REMARK 465 MET C 560 REMARK 465 ALA C 561 REMARK 465 PHE C 562 REMARK 465 LYS C 563 REMARK 465 GLY D 454 REMARK 465 SER D 455 REMARK 465 GLN D 456 REMARK 465 ASN D 457 REMARK 465 THR D 458 REMARK 465 ALA D 459 REMARK 465 ASN D 460 REMARK 465 THR D 461 REMARK 465 THR D 470 REMARK 465 THR D 471 REMARK 465 THR D 472 REMARK 465 THR D 473 REMARK 465 ARG D 474 REMARK 465 THR D 500 REMARK 465 LYS D 501 REMARK 465 HIS D 502 REMARK 465 LYS D 503 REMARK 465 ASN D 504 REMARK 465 ASP D 505 REMARK 465 TYR D 506 REMARK 465 THR D 507 REMARK 465 ASP D 508 REMARK 465 PRO D 509 REMARK 465 HIS D 510 REMARK 465 ALA D 511 REMARK 465 ASN D 512 REMARK 465 LYS D 513 REMARK 465 ASN D 514 REMARK 465 ILE D 515 REMARK 465 ASP D 516 REMARK 465 LYS D 517 REMARK 465 SER D 518 REMARK 465 ALA D 519 REMARK 465 LEU D 520 REMARK 465 ASN D 521 REMARK 465 ILE D 522 REMARK 465 HIS D 523 REMARK 465 ALA D 524 REMARK 465 ASP D 525 REMARK 465 GLU D 526 REMARK 465 ASN D 527 REMARK 465 ASP D 528 REMARK 465 GLU D 529 REMARK 465 GLY D 530 REMARK 465 SER D 531 REMARK 465 VAL D 532 REMARK 465 ASP D 533 REMARK 465 ASN D 534 REMARK 465 THR D 535 REMARK 465 LEU D 536 REMARK 465 GLY D 537 REMARK 465 SER D 538 REMARK 465 ASP D 539 REMARK 465 ARG D 540 REMARK 465 SER D 541 REMARK 465 ASN D 542 REMARK 465 GLU D 543 REMARK 465 LEU D 544 REMARK 465 GLU D 545 REMARK 465 ILE D 546 REMARK 465 ARG D 547 REMARK 465 GLY D 548 REMARK 465 LYS D 549 REMARK 465 TYR D 550 REMARK 465 VAL D 551 REMARK 465 VAL D 552 REMARK 465 VAL D 553 REMARK 465 PRO D 554 REMARK 465 GLU D 555 REMARK 465 THR D 556 REMARK 465 SER D 557 REMARK 465 GLN D 558 REMARK 465 ASP D 559 REMARK 465 MET D 560 REMARK 465 ALA D 561 REMARK 465 PHE D 562 REMARK 465 LYS D 563 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 149.32 -171.41 REMARK 500 GLU A 41 -2.68 80.37 REMARK 500 ASN A 70 66.05 35.95 REMARK 500 THR A 137 -89.84 -128.02 REMARK 500 SER A 138 -69.70 -25.69 REMARK 500 ALA A 152 74.39 59.09 REMARK 500 PHE A 167 -1.86 68.38 REMARK 500 TRP A 189 -36.36 83.19 REMARK 500 ASN A 218 86.66 -170.82 REMARK 500 LYS A 309 -75.97 -10.73 REMARK 500 ASN A 364 -141.50 -105.90 REMARK 500 GLU A 365 -28.79 -145.12 REMARK 500 ILE A 376 96.99 -63.05 REMARK 500 ARG A 419 65.31 -49.98 REMARK 500 ALA B 40 -81.60 66.15 REMARK 500 ASN B 70 61.53 38.64 REMARK 500 THR B 134 -8.55 -142.91 REMARK 500 THR B 137 -101.02 56.41 REMARK 500 SER B 138 -81.75 -17.06 REMARK 500 PHE B 167 -0.41 68.02 REMARK 500 TRP B 189 -34.01 82.40 REMARK 500 ASN B 218 87.00 -170.20 REMARK 500 GLU B 365 -58.15 65.62 REMARK 500 ILE B 376 97.87 -62.90 REMARK 500 ARG B 419 65.19 -50.00 REMARK 500 ASN C 465 134.85 66.48 REMARK 500 SER C 466 -98.72 -113.77 REMARK 500 THR C 498 35.55 -71.98 REMARK 500 SER D 464 98.34 -24.97 REMARK 500 SER D 466 -164.62 81.43 REMARK 500 THR D 498 36.00 -71.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C0B RELATED DB: PDB REMARK 900 STRUCTURE OF WILD-TYPE CLP1P-PCF11P (454-563) COMPLEX DBREF 4C0H A 1 445 UNP Q08685 CLP1_YEAST 1 445 DBREF 4C0H B 1 445 UNP Q08685 CLP1_YEAST 1 445 DBREF 4C0H C 454 563 UNP N1P6M1 N1P6M1_YEASX 454 563 DBREF 4C0H D 454 563 UNP N1P6M1 N1P6M1_YEASX 454 563 SEQADV 4C0H ARG A 135 UNP Q08685 GLY 135 ENGINEERED MUTATION SEQADV 4C0H ARG B 135 UNP Q08685 GLY 135 ENGINEERED MUTATION SEQRES 1 A 445 MET ALA SER LEU PRO GLY ILE ASP GLU HIS THR THR SER SEQRES 2 A 445 GLU GLU LEU ILE THR GLY ASP ASN GLU TRP HIS LYS LEU SEQRES 3 A 445 VAL ILE PRO LYS GLY SER ASP TRP GLN ILE ASP LEU LYS SEQRES 4 A 445 ALA GLU GLY LYS LEU ILE VAL LYS VAL ASN SER GLY ILE SEQRES 5 A 445 VAL GLU ILE PHE GLY THR GLU LEU ALA VAL ASP ASP GLU SEQRES 6 A 445 TYR THR PHE GLN ASN TRP LYS PHE PRO ILE TYR ALA VAL SEQRES 7 A 445 GLU GLU THR GLU LEU LEU TRP LYS CYS PRO ASP LEU THR SEQRES 8 A 445 THR ASN THR ILE THR VAL LYS PRO ASN HIS THR MET LYS SEQRES 9 A 445 TYR ILE TYR ASN LEU HIS PHE MET LEU GLU LYS ILE ARG SEQRES 10 A 445 MET SER ASN PHE GLU GLY PRO ARG VAL VAL ILE VAL GLY SEQRES 11 A 445 GLY SER GLN THR ARG LYS THR SER LEU SER ARG THR LEU SEQRES 12 A 445 CYS SER TYR ALA LEU LYS PHE ASN ALA TYR GLN PRO LEU SEQRES 13 A 445 TYR ILE ASN LEU ASP PRO GLN GLN PRO ILE PHE THR VAL SEQRES 14 A 445 PRO GLY CYS ILE SER ALA THR PRO ILE SER ASP ILE LEU SEQRES 15 A 445 ASP ALA GLN LEU PRO THR TRP GLY GLN SER LEU THR SER SEQRES 16 A 445 GLY ALA THR LEU LEU HIS ASN LYS GLN PRO MET VAL LYS SEQRES 17 A 445 ASN PHE GLY LEU GLU ARG ILE ASN GLU ASN LYS ASP LEU SEQRES 18 A 445 TYR LEU GLU CYS ILE SER GLN LEU GLY GLN VAL VAL GLY SEQRES 19 A 445 GLN ARG LEU HIS LEU ASP PRO GLN VAL ARG ARG SER GLY SEQRES 20 A 445 CYS ILE VAL ASP THR PRO SER ILE SER GLN LEU ASP GLU SEQRES 21 A 445 ASN LEU ALA GLU LEU HIS HIS ILE ILE GLU LYS LEU ASN SEQRES 22 A 445 VAL ASN ILE MET LEU VAL LEU CYS SER GLU THR ASP PRO SEQRES 23 A 445 LEU TRP GLU LYS VAL LYS LYS THR PHE GLY PRO GLU LEU SEQRES 24 A 445 GLY ASN ASN ASN ILE PHE PHE ILE PRO LYS LEU ASP GLY SEQRES 25 A 445 VAL SER ALA VAL ASP ASP VAL TYR LYS ARG SER LEU GLN SEQRES 26 A 445 ARG THR SER ILE ARG GLU TYR PHE TYR GLY SER LEU ASP SEQRES 27 A 445 THR ALA LEU SER PRO TYR ALA ILE GLY VAL ASP TYR GLU SEQRES 28 A 445 ASP LEU THR ILE TRP LYS PRO SER ASN VAL PHE ASP ASN SEQRES 29 A 445 GLU VAL GLY ARG VAL GLU LEU PHE PRO VAL THR ILE THR SEQRES 30 A 445 PRO SER ASN LEU GLN HIS ALA ILE ILE ALA ILE THR PHE SEQRES 31 A 445 ALA GLU ARG ARG ALA ASP GLN ALA THR VAL ILE LYS SER SEQRES 32 A 445 PRO ILE LEU GLY PHE ALA LEU ILE THR GLU VAL ASN GLU SEQRES 33 A 445 LYS ARG ARG LYS LEU ARG VAL LEU LEU PRO VAL PRO GLY SEQRES 34 A 445 ARG LEU PRO SER LYS ALA MET ILE LEU THR SER TYR ARG SEQRES 35 A 445 TYR LEU GLU SEQRES 1 B 445 MET ALA SER LEU PRO GLY ILE ASP GLU HIS THR THR SER SEQRES 2 B 445 GLU GLU LEU ILE THR GLY ASP ASN GLU TRP HIS LYS LEU SEQRES 3 B 445 VAL ILE PRO LYS GLY SER ASP TRP GLN ILE ASP LEU LYS SEQRES 4 B 445 ALA GLU GLY LYS LEU ILE VAL LYS VAL ASN SER GLY ILE SEQRES 5 B 445 VAL GLU ILE PHE GLY THR GLU LEU ALA VAL ASP ASP GLU SEQRES 6 B 445 TYR THR PHE GLN ASN TRP LYS PHE PRO ILE TYR ALA VAL SEQRES 7 B 445 GLU GLU THR GLU LEU LEU TRP LYS CYS PRO ASP LEU THR SEQRES 8 B 445 THR ASN THR ILE THR VAL LYS PRO ASN HIS THR MET LYS SEQRES 9 B 445 TYR ILE TYR ASN LEU HIS PHE MET LEU GLU LYS ILE ARG SEQRES 10 B 445 MET SER ASN PHE GLU GLY PRO ARG VAL VAL ILE VAL GLY SEQRES 11 B 445 GLY SER GLN THR ARG LYS THR SER LEU SER ARG THR LEU SEQRES 12 B 445 CYS SER TYR ALA LEU LYS PHE ASN ALA TYR GLN PRO LEU SEQRES 13 B 445 TYR ILE ASN LEU ASP PRO GLN GLN PRO ILE PHE THR VAL SEQRES 14 B 445 PRO GLY CYS ILE SER ALA THR PRO ILE SER ASP ILE LEU SEQRES 15 B 445 ASP ALA GLN LEU PRO THR TRP GLY GLN SER LEU THR SER SEQRES 16 B 445 GLY ALA THR LEU LEU HIS ASN LYS GLN PRO MET VAL LYS SEQRES 17 B 445 ASN PHE GLY LEU GLU ARG ILE ASN GLU ASN LYS ASP LEU SEQRES 18 B 445 TYR LEU GLU CYS ILE SER GLN LEU GLY GLN VAL VAL GLY SEQRES 19 B 445 GLN ARG LEU HIS LEU ASP PRO GLN VAL ARG ARG SER GLY SEQRES 20 B 445 CYS ILE VAL ASP THR PRO SER ILE SER GLN LEU ASP GLU SEQRES 21 B 445 ASN LEU ALA GLU LEU HIS HIS ILE ILE GLU LYS LEU ASN SEQRES 22 B 445 VAL ASN ILE MET LEU VAL LEU CYS SER GLU THR ASP PRO SEQRES 23 B 445 LEU TRP GLU LYS VAL LYS LYS THR PHE GLY PRO GLU LEU SEQRES 24 B 445 GLY ASN ASN ASN ILE PHE PHE ILE PRO LYS LEU ASP GLY SEQRES 25 B 445 VAL SER ALA VAL ASP ASP VAL TYR LYS ARG SER LEU GLN SEQRES 26 B 445 ARG THR SER ILE ARG GLU TYR PHE TYR GLY SER LEU ASP SEQRES 27 B 445 THR ALA LEU SER PRO TYR ALA ILE GLY VAL ASP TYR GLU SEQRES 28 B 445 ASP LEU THR ILE TRP LYS PRO SER ASN VAL PHE ASP ASN SEQRES 29 B 445 GLU VAL GLY ARG VAL GLU LEU PHE PRO VAL THR ILE THR SEQRES 30 B 445 PRO SER ASN LEU GLN HIS ALA ILE ILE ALA ILE THR PHE SEQRES 31 B 445 ALA GLU ARG ARG ALA ASP GLN ALA THR VAL ILE LYS SER SEQRES 32 B 445 PRO ILE LEU GLY PHE ALA LEU ILE THR GLU VAL ASN GLU SEQRES 33 B 445 LYS ARG ARG LYS LEU ARG VAL LEU LEU PRO VAL PRO GLY SEQRES 34 B 445 ARG LEU PRO SER LYS ALA MET ILE LEU THR SER TYR ARG SEQRES 35 B 445 TYR LEU GLU SEQRES 1 C 110 GLY SER GLN ASN THR ALA ASN THR GLY ILE SER ASN SER SEQRES 2 C 110 ASN LEU ASN THR THR THR THR ARG LYS ASN ILE GLN SER SEQRES 3 C 110 ARG ASN TRP TYR LEU SER ASP SER GLN TRP ALA ALA PHE SEQRES 4 C 110 LYS ASP ASP GLU ILE THR SER THR LYS HIS LYS ASN ASP SEQRES 5 C 110 TYR THR ASP PRO HIS ALA ASN LYS ASN ILE ASP LYS SER SEQRES 6 C 110 ALA LEU ASN ILE HIS ALA ASP GLU ASN ASP GLU GLY SER SEQRES 7 C 110 VAL ASP ASN THR LEU GLY SER ASP ARG SER ASN GLU LEU SEQRES 8 C 110 GLU ILE ARG GLY LYS TYR VAL VAL VAL PRO GLU THR SER SEQRES 9 C 110 GLN ASP MET ALA PHE LYS SEQRES 1 D 110 GLY SER GLN ASN THR ALA ASN THR GLY ILE SER ASN SER SEQRES 2 D 110 ASN LEU ASN THR THR THR THR ARG LYS ASN ILE GLN SER SEQRES 3 D 110 ARG ASN TRP TYR LEU SER ASP SER GLN TRP ALA ALA PHE SEQRES 4 D 110 LYS ASP ASP GLU ILE THR SER THR LYS HIS LYS ASN ASP SEQRES 5 D 110 TYR THR ASP PRO HIS ALA ASN LYS ASN ILE ASP LYS SER SEQRES 6 D 110 ALA LEU ASN ILE HIS ALA ASP GLU ASN ASP GLU GLY SER SEQRES 7 D 110 VAL ASP ASN THR LEU GLY SER ASP ARG SER ASN GLU LEU SEQRES 8 D 110 GLU ILE ARG GLY LYS TYR VAL VAL VAL PRO GLU THR SER SEQRES 9 D 110 GLN ASP MET ALA PHE LYS FORMUL 5 HOH *25(H2 O) HELIX 1 1 THR A 102 ASN A 120 1 19 HELIX 2 2 THR A 137 PHE A 150 1 14 HELIX 3 3 ARG A 214 GLU A 217 5 4 HELIX 4 4 ASN A 218 ASP A 240 1 23 HELIX 5 5 ASP A 240 GLY A 247 1 8 HELIX 6 6 SER A 254 LEU A 258 5 5 HELIX 7 7 LEU A 262 ASN A 273 1 12 HELIX 8 8 PRO A 286 GLY A 300 1 15 HELIX 9 9 ASP A 317 TYR A 334 1 18 HELIX 10 10 GLU A 351 LEU A 353 5 3 HELIX 11 11 THR A 377 GLN A 382 1 6 HELIX 12 12 ASP A 396 SER A 403 1 8 HELIX 13 13 THR B 102 ASN B 120 1 19 HELIX 14 14 THR B 137 ALA B 152 1 16 HELIX 15 15 ARG B 214 GLU B 217 5 4 HELIX 16 16 ASN B 218 ASP B 240 1 23 HELIX 17 17 ASP B 240 SER B 246 1 7 HELIX 18 18 SER B 254 LEU B 258 5 5 HELIX 19 19 LEU B 262 ASN B 273 1 12 HELIX 20 20 PRO B 286 GLY B 300 1 15 HELIX 21 21 ASP B 317 TYR B 334 1 18 HELIX 22 22 GLU B 351 LEU B 353 5 3 HELIX 23 23 ASN B 360 GLU B 365 1 6 HELIX 24 24 THR B 377 GLN B 382 1 6 HELIX 25 25 ASP B 396 SER B 403 1 8 HELIX 26 26 SER C 485 ALA C 491 1 7 HELIX 27 27 LYS C 493 ILE C 497 5 5 HELIX 28 28 SER D 485 ALA D 491 1 7 HELIX 29 29 LYS D 493 ILE D 497 5 5 SHEET 1 AA 4 HIS A 24 ILE A 28 0 SHEET 2 AA 4 THR A 81 LYS A 86 -1 O THR A 81 N ILE A 28 SHEET 3 AA 4 LYS A 43 SER A 50 -1 O ILE A 45 N LYS A 86 SHEET 4 AA 4 GLU A 65 GLN A 69 -1 O TYR A 66 N VAL A 46 SHEET 1 AB 5 THR A 58 GLU A 59 0 SHEET 2 AB 5 VAL A 53 ILE A 55 -1 O ILE A 55 N THR A 58 SHEET 3 AB 5 LYS A 72 ALA A 77 -1 O TYR A 76 N GLU A 54 SHEET 4 AB 5 SER A 32 ASP A 37 -1 O SER A 32 N ALA A 77 SHEET 5 AB 5 THR A 96 PRO A 99 -1 O THR A 96 N GLN A 35 SHEET 1 AC 7 MET A 206 ASN A 209 0 SHEET 2 AC 7 CYS A 172 PRO A 177 -1 O ILE A 173 N LYS A 208 SHEET 3 AC 7 LEU A 156 ASN A 159 -1 O TYR A 157 N THR A 176 SHEET 4 AC 7 CYS A 248 ASP A 251 1 O ILE A 249 N ILE A 158 SHEET 5 AC 7 ARG A 125 VAL A 129 1 O VAL A 126 N VAL A 250 SHEET 6 AC 7 ILE A 276 LEU A 280 1 O ILE A 276 N VAL A 127 SHEET 7 AC 7 ILE A 304 ILE A 307 1 O PHE A 305 N VAL A 279 SHEET 1 AD 2 GLY A 335 SER A 336 0 SHEET 2 AD 2 THR A 339 ALA A 340 -1 O THR A 339 N SER A 336 SHEET 1 AE 7 TYR A 344 ASP A 349 0 SHEET 2 AE 7 LYS A 420 LEU A 425 -1 O LEU A 421 N VAL A 348 SHEET 3 AE 7 ILE A 405 ASN A 415 -1 O LEU A 410 N LEU A 424 SHEET 4 AE 7 ALA A 384 THR A 389 -1 O ALA A 384 N ILE A 411 SHEET 5 AE 7 MET A 436 ARG A 442 -1 O ILE A 437 N ALA A 387 SHEET 6 AE 7 ILE A 355 PRO A 358 1 O TRP A 356 N LEU A 438 SHEET 7 AE 7 LEU A 371 PRO A 373 -1 O PHE A 372 N LYS A 357 SHEET 1 BA 4 HIS B 24 ILE B 28 0 SHEET 2 BA 4 THR B 81 LYS B 86 -1 O THR B 81 N ILE B 28 SHEET 3 BA 4 LYS B 43 SER B 50 -1 O ILE B 45 N LYS B 86 SHEET 4 BA 4 GLU B 65 GLN B 69 -1 O TYR B 66 N VAL B 46 SHEET 1 BB 5 THR B 58 GLU B 59 0 SHEET 2 BB 5 VAL B 53 ILE B 55 -1 O ILE B 55 N THR B 58 SHEET 3 BB 5 LYS B 72 ALA B 77 -1 O TYR B 76 N GLU B 54 SHEET 4 BB 5 SER B 32 ASP B 37 -1 O SER B 32 N ALA B 77 SHEET 5 BB 5 THR B 96 PRO B 99 -1 O THR B 96 N GLN B 35 SHEET 1 BC 7 MET B 206 ASN B 209 0 SHEET 2 BC 7 CYS B 172 PRO B 177 -1 O ILE B 173 N LYS B 208 SHEET 3 BC 7 LEU B 156 ASN B 159 -1 O TYR B 157 N THR B 176 SHEET 4 BC 7 CYS B 248 ASP B 251 1 O ILE B 249 N ILE B 158 SHEET 5 BC 7 ARG B 125 GLY B 130 1 O VAL B 126 N VAL B 250 SHEET 6 BC 7 ILE B 276 LEU B 280 1 O ILE B 276 N VAL B 127 SHEET 7 BC 7 ILE B 304 ILE B 307 1 O PHE B 305 N VAL B 279 SHEET 1 BD 2 GLY B 335 SER B 336 0 SHEET 2 BD 2 THR B 339 ALA B 340 -1 O THR B 339 N SER B 336 SHEET 1 BE 8 LEU B 371 PRO B 373 0 SHEET 2 BE 8 ILE B 355 PRO B 358 -1 O LYS B 357 N PHE B 372 SHEET 3 BE 8 MET B 436 ARG B 442 1 O MET B 436 N TRP B 356 SHEET 4 BE 8 ALA B 384 THR B 389 -1 O ILE B 385 N THR B 439 SHEET 5 BE 8 ILE B 405 ASN B 415 -1 N LEU B 406 O ILE B 388 SHEET 6 BE 8 LYS B 420 LEU B 425 -1 O LYS B 420 N ASN B 415 SHEET 7 BE 8 TYR B 344 ASP B 349 -1 O TYR B 344 N LEU B 425 SHEET 8 BE 8 SER D 466 ASN D 467 -1 O SER D 466 N ALA B 345 CISPEP 1 ASN C 465 SER C 466 0 -16.64 CRYST1 89.395 95.609 182.063 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005493 0.00000 MASTER 502 0 0 29 51 0 0 6 0 0 0 88 END