HEADER IMMUNE SYSTEM 07-MAY-13 4BM7 TITLE CRYSTAL STRUCTURE OF IGG FC F241A MUTANT WITH NATIVE GLYCOSYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IMMUNOGLOBULIN GAMMA, FC, RESIDUES 101-329; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHLSEC KEYWDS IMMUNE SYSTEM, GLYCAN EXPDTA X-RAY DIFFRACTION AUTHOR X.YU,K.BARUAH,D.J.HARVEY,S.VASILJEVIC,D.S.ALONZI,B.SONG,M.K.HIGGINS, AUTHOR 2 T.A.BOWDEN,M.CRISPIN,C.N.SCANLAN REVDAT 4 29-JUL-20 4BM7 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 03-APR-19 4BM7 1 SOURCE LINK REVDAT 2 17-JUL-13 4BM7 1 JRNL REVDAT 1 03-JUL-13 4BM7 0 JRNL AUTH X.YU,K.BARUAH,D.J.HARVEY,S.VASILJEVIC,D.S.ALONZI,B.SONG, JRNL AUTH 2 M.K.HIGGINS,T.A.BOWDEN,C.N.SCANLAN,M.CRISPIN JRNL TITL ENGINEERING HYDROPHOBIC PROTEIN-CARBOHYDRATE INTERACTIONS TO JRNL TITL 2 FINE-TUNE MONOCLONAL ANTIBODIES. JRNL REF J.AM.CHEM.SOC. V. 135 9723 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23745692 JRNL DOI 10.1021/JA4014375 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 34319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.424 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3345 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3131 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4571 ; 1.311 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7253 ; 0.717 ; 2.995 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;33.864 ;25.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;14.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3638 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 0.806 ; 1.641 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1574 ; 0.806 ; 1.640 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 1.350 ; 2.454 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1770 ; 1.341 ; 2.045 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 238 B 339 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8280 21.7735 13.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.6157 T22: 0.2789 REMARK 3 T33: 0.1472 T12: 0.0023 REMARK 3 T13: 0.0527 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 4.7316 L22: 7.6242 REMARK 3 L33: 7.5837 L12: 0.3869 REMARK 3 L13: -1.0441 L23: 0.7943 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 1.0420 S13: 0.2698 REMARK 3 S21: -2.0126 S22: -0.0092 S23: -0.2153 REMARK 3 S31: -0.5836 S32: -0.1151 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 340 B 358 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8007 7.4243 40.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0941 REMARK 3 T33: 0.0956 T12: 0.0229 REMARK 3 T13: -0.0165 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 13.3808 L22: 2.7198 REMARK 3 L33: 8.4604 L12: 1.2498 REMARK 3 L13: 6.8175 L23: 1.0516 REMARK 3 S TENSOR REMARK 3 S11: 0.2618 S12: -0.9420 S13: -0.4220 REMARK 3 S21: 0.2689 S22: 0.0843 S23: 0.0373 REMARK 3 S31: 0.4972 S32: -0.4095 S33: -0.3461 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 359 B 417 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2799 13.2090 37.4357 REMARK 3 T TENSOR REMARK 3 T11: 0.0234 T22: 0.1244 REMARK 3 T33: 0.1081 T12: 0.0176 REMARK 3 T13: -0.0082 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 5.9359 L22: 3.4914 REMARK 3 L33: 3.0747 L12: -0.6964 REMARK 3 L13: 1.5971 L23: 0.7617 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: -0.0488 S13: 0.4508 REMARK 3 S21: 0.0055 S22: 0.0791 S23: -0.3571 REMARK 3 S31: -0.2082 S32: 0.1680 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 418 B 445 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4171 16.9547 43.5314 REMARK 3 T TENSOR REMARK 3 T11: 0.0996 T22: 0.1298 REMARK 3 T33: 0.1002 T12: 0.0445 REMARK 3 T13: -0.0241 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 11.7036 L22: 4.4194 REMARK 3 L33: 9.7548 L12: 2.8754 REMARK 3 L13: 8.3403 L23: 3.6069 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.7324 S13: 0.1100 REMARK 3 S21: 0.5579 S22: 0.1587 S23: -0.2387 REMARK 3 S31: 0.1572 S32: 0.0027 S33: -0.2017 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5301 -8.5831 17.5463 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.1307 REMARK 3 T33: 0.1318 T12: -0.0414 REMARK 3 T13: -0.0492 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 3.3474 L22: 1.6578 REMARK 3 L33: 14.2156 L12: -0.6672 REMARK 3 L13: 2.2328 L23: -1.1926 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: 0.2803 S13: -0.2122 REMARK 3 S21: -0.5585 S22: -0.0997 S23: 0.1857 REMARK 3 S31: 0.5249 S32: -0.7161 S33: -0.0865 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0198 -15.4828 -5.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.7516 T22: 0.6263 REMARK 3 T33: 0.3292 T12: -0.1490 REMARK 3 T13: -0.1044 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 40.5668 L22: 7.5521 REMARK 3 L33: 9.2905 L12: -17.4766 REMARK 3 L13: -16.7171 L23: 7.3467 REMARK 3 S TENSOR REMARK 3 S11: -0.3404 S12: 0.8242 S13: -1.1093 REMARK 3 S21: 0.0216 S22: -0.3468 S23: 0.5149 REMARK 3 S31: -0.2502 S32: -0.5510 S33: 0.6872 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5943 -9.9180 7.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.5291 T22: 0.3917 REMARK 3 T33: 0.2123 T12: 0.0122 REMARK 3 T13: 0.0533 T23: -0.1261 REMARK 3 L TENSOR REMARK 3 L11: 4.3699 L22: 5.0292 REMARK 3 L33: 8.5847 L12: 2.2422 REMARK 3 L13: 3.0199 L23: 3.6898 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 1.1827 S13: -0.5204 REMARK 3 S21: -1.0593 S22: 0.2831 S23: -0.2476 REMARK 3 S31: 0.2550 S32: 0.4579 S33: -0.2308 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 443 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9286 0.0954 39.2580 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0959 REMARK 3 T33: 0.0766 T12: 0.0238 REMARK 3 T13: 0.0072 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 5.7252 L22: 2.9801 REMARK 3 L33: 2.4447 L12: -0.6106 REMARK 3 L13: -1.2915 L23: -0.3657 REMARK 3 S TENSOR REMARK 3 S11: -0.1227 S12: -0.1951 S13: -0.2897 REMARK 3 S21: 0.2228 S22: 0.1498 S23: 0.2683 REMARK 3 S31: 0.1128 S32: -0.1285 S33: -0.0271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3AVE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 2,000 IN 0.1M BIS-TRIS BUFFER AT PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.43400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.97550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.68750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.97550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.43400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.68750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 THR A 447 REMARK 465 LYS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 GLY B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 VAL B 264 REMARK 465 ASP B 265 REMARK 465 VAL B 266 REMARK 465 SER B 267 REMARK 465 HIS B 268 REMARK 465 GLU B 269 REMARK 465 ASP B 270 REMARK 465 PRO B 271 REMARK 465 GLU B 272 REMARK 465 VAL B 273 REMARK 465 LYS B 274 REMARK 465 TYR B 296 REMARK 465 ASN B 297 REMARK 465 SER B 298 REMARK 465 THR B 299 REMARK 465 TYR B 300 REMARK 465 SER B 324 REMARK 465 ASN B 325 REMARK 465 LYS B 326 REMARK 465 ALA B 327 REMARK 465 LEU B 328 REMARK 465 PRO B 329 REMARK 465 ALA B 330 REMARK 465 PRO B 331 REMARK 465 ILE B 332 REMARK 465 GLY B 446 REMARK 465 THR B 447 REMARK 465 LYS B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 430 O HOH A 2149 2.01 REMARK 500 O HOH A 2046 O HOH A 2155 2.08 REMARK 500 O HOH A 2064 O HOH A 2161 2.09 REMARK 500 OE1 GLN B 311 O HOH B 2025 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 434 13.17 57.45 REMARK 500 ASN B 434 14.83 59.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2088 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A2089 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B2055 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2065 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B2127 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B2128 DISTANCE = 7.55 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE INCLUDES A SITE-DIRECTED F241A MUTATION FOR REMARK 999 ANALYSIS OF EFFECTS UPON PROTEIN-CARBOHYDRATE INTERACTIONS REMARK 999 AND GLYCAN BIOSYNTHESIS DBREF 4BM7 A 223 446 UNP P01857 IGHG1_HUMAN 106 329 DBREF 4BM7 B 223 446 UNP P01857 IGHG1_HUMAN 106 329 SEQADV 4BM7 GLY A 222 UNP P01857 EXPRESSION TAG SEQADV 4BM7 THR A 447 UNP P01857 EXPRESSION TAG SEQADV 4BM7 LYS A 448 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS A 449 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS A 450 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS A 451 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS A 452 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS A 453 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS A 454 UNP P01857 EXPRESSION TAG SEQADV 4BM7 ALA A 241 UNP P01857 PHE 124 ENGINEERED MUTATION SEQADV 4BM7 GLU A 356 UNP P01857 ASP 239 VARIANT SEQADV 4BM7 MET A 358 UNP P01857 LEU 241 VARIANT SEQADV 4BM7 GLY B 222 UNP P01857 EXPRESSION TAG SEQADV 4BM7 THR B 447 UNP P01857 EXPRESSION TAG SEQADV 4BM7 LYS B 448 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS B 449 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS B 450 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS B 451 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS B 452 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS B 453 UNP P01857 EXPRESSION TAG SEQADV 4BM7 HIS B 454 UNP P01857 EXPRESSION TAG SEQADV 4BM7 ALA B 241 UNP P01857 PHE 124 ENGINEERED MUTATION SEQADV 4BM7 GLU B 356 UNP P01857 ASP 239 VARIANT SEQADV 4BM7 MET B 358 UNP P01857 LEU 241 VARIANT SEQRES 1 A 233 GLY THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU LEU SEQRES 2 A 233 LEU GLY GLY PRO SER VAL ALA LEU PHE PRO PRO LYS PRO SEQRES 3 A 233 LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR SEQRES 4 A 233 CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL SEQRES 5 A 233 LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN SEQRES 6 A 233 ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR SEQRES 7 A 233 TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP SEQRES 8 A 233 TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN SEQRES 9 A 233 LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS SEQRES 10 A 233 ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU SEQRES 11 A 233 PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SER SEQRES 12 A 233 LEU THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE SEQRES 13 A 233 ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN SEQRES 14 A 233 TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER SEQRES 15 A 233 PHE PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG SEQRES 16 A 233 TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS SEQRES 17 A 233 GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER SEQRES 18 A 233 LEU SER PRO GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 233 GLY THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU LEU SEQRES 2 B 233 LEU GLY GLY PRO SER VAL ALA LEU PHE PRO PRO LYS PRO SEQRES 3 B 233 LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR SEQRES 4 B 233 CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL SEQRES 5 B 233 LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN SEQRES 6 B 233 ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR SEQRES 7 B 233 TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP SEQRES 8 B 233 TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN SEQRES 9 B 233 LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS SEQRES 10 B 233 ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU SEQRES 11 B 233 PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SER SEQRES 12 B 233 LEU THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE SEQRES 13 B 233 ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN SEQRES 14 B 233 TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER SEQRES 15 B 233 PHE PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG SEQRES 16 B 233 TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS SEQRES 17 B 233 GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER SEQRES 18 B 233 LEU SER PRO GLY THR LYS HIS HIS HIS HIS HIS HIS MODRES 4BM7 ASN A 297 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET FUL C 7 10 HET CL A1451 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUL C6 H12 O5 FORMUL 4 CL CL 1- FORMUL 5 HOH *297(H2 O) HELIX 1 1 LYS A 246 MET A 252 1 7 HELIX 2 2 LEU A 309 ASN A 315 1 7 HELIX 3 3 SER A 354 LYS A 360 5 7 HELIX 4 4 LYS A 414 GLN A 419 1 6 HELIX 5 5 LEU A 432 ASN A 434 5 3 HELIX 6 6 LYS B 246 MET B 252 1 7 HELIX 7 7 LEU B 309 ASN B 315 1 7 HELIX 8 8 SER B 354 LYS B 360 5 7 HELIX 9 9 LYS B 414 GLN B 419 1 6 HELIX 10 10 LEU B 432 ASN B 434 5 3 SHEET 1 AA 4 SER A 239 PHE A 243 0 SHEET 2 AA 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA 4 TYR A 300 THR A 307 -1 O TYR A 300 N VAL A 266 SHEET 4 AA 4 GLU A 293 GLU A 294 1 O GLU A 293 N ARG A 301 SHEET 1 AB 4 SER A 239 PHE A 243 0 SHEET 2 AB 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AB 4 TYR A 300 THR A 307 -1 O TYR A 300 N VAL A 266 SHEET 4 AB 4 LYS A 288 THR A 289 -1 O LYS A 288 N VAL A 305 SHEET 1 AC 2 GLU A 293 GLU A 294 0 SHEET 2 AC 2 TYR A 300 THR A 307 1 O ARG A 301 N GLU A 293 SHEET 1 AD 4 VAL A 282 VAL A 284 0 SHEET 2 AD 4 LYS A 274 VAL A 279 -1 O TRP A 277 N VAL A 284 SHEET 3 AD 4 TYR A 319 SER A 324 -1 O LYS A 320 N TYR A 278 SHEET 4 AD 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AE 4 GLN A 347 LEU A 351 0 SHEET 2 AE 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AE 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 AE 4 VAL A 397 LEU A 398 1 O VAL A 397 N PHE A 405 SHEET 1 AF 4 GLN A 347 LEU A 351 0 SHEET 2 AF 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AF 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 AF 4 TYR A 391 THR A 393 -1 O LYS A 392 N LYS A 409 SHEET 1 AG 2 VAL A 397 LEU A 398 0 SHEET 2 AG 2 PHE A 404 ASP A 413 1 O PHE A 405 N VAL A 397 SHEET 1 AH 4 GLN A 386 PRO A 387 0 SHEET 2 AH 4 ALA A 378 SER A 383 -1 O SER A 383 N GLN A 386 SHEET 3 AH 4 PHE A 423 MET A 428 -1 O SER A 424 N GLU A 382 SHEET 4 AH 4 TYR A 436 LEU A 441 -1 O THR A 437 N VAL A 427 SHEET 1 BA 4 ALA B 241 PHE B 243 0 SHEET 2 BA 4 GLU B 258 VAL B 263 -1 O THR B 260 N PHE B 243 SHEET 3 BA 4 VAL B 302 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 BA 4 LYS B 288 THR B 289 -1 O LYS B 288 N VAL B 305 SHEET 1 BB 4 VAL B 282 VAL B 284 0 SHEET 2 BB 4 ASN B 276 VAL B 279 -1 O TRP B 277 N VAL B 284 SHEET 3 BB 4 TYR B 319 LYS B 322 -1 O LYS B 320 N TYR B 278 SHEET 4 BB 4 LYS B 334 ILE B 336 -1 O LYS B 334 N CYS B 321 SHEET 1 BC 4 GLN B 347 LEU B 351 0 SHEET 2 BC 4 GLN B 362 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 BC 4 PHE B 404 ASP B 413 -1 O PHE B 404 N PHE B 372 SHEET 4 BC 4 VAL B 397 LEU B 398 1 O VAL B 397 N PHE B 405 SHEET 1 BD 4 GLN B 347 LEU B 351 0 SHEET 2 BD 4 GLN B 362 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 BD 4 PHE B 404 ASP B 413 -1 O PHE B 404 N PHE B 372 SHEET 4 BD 4 TYR B 391 THR B 393 -1 O LYS B 392 N LYS B 409 SHEET 1 BE 2 VAL B 397 LEU B 398 0 SHEET 2 BE 2 PHE B 404 ASP B 413 1 O PHE B 405 N VAL B 397 SHEET 1 BF 4 GLN B 386 PRO B 387 0 SHEET 2 BF 4 ALA B 378 SER B 383 -1 O SER B 383 N GLN B 386 SHEET 3 BF 4 PHE B 423 MET B 428 -1 O SER B 424 N GLU B 382 SHEET 4 BF 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.06 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.03 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.02 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.04 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUL C 7 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.45 CISPEP 1 TYR A 373 PRO A 374 0 -6.80 CISPEP 2 TYR B 373 PRO B 374 0 -9.87 CRYST1 48.868 73.375 135.951 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007356 0.00000 MASTER 525 0 8 10 50 0 0 6 0 0 0 36 END