HEADER ELECTRON TRANSPORT 17-APR-98 4BCL TITLE FMO PROTEIN FROM PROSTHECOCHLORIS AESTUARII 2K AT ROOM TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCHLOROPHYLL A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FENNA-MATTHEWS-OLSON PROTEIN, FMO-PROTEIN, BCHL A PROTEIN, COMPND 5 BCP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROSTHECOCHLORIS AESTUARII; SOURCE 3 ORGANISM_TAXID: 1102; SOURCE 4 CELLULAR_LOCATION: LIGHT GATHERING ANTENNA COMPLEX KEYWDS ELECTRON TRANSPORT, EXCITATION ENERGY TRANSFER, REACTION CENTER EXPDTA X-RAY DIFFRACTION AUTHOR D.E.TRONRUD,B.W.MATTHEWS REVDAT 4 18-DEC-13 4BCL 1 OBSLTE REMARK TITLE VERSN REVDAT 3 12-MAY-09 4BCL 1 OBSLTE REVDAT 2 24-FEB-09 4BCL 1 VERSN REVDAT 1 16-SEP-98 4BCL 0 SPRSDE 15-JUL-98 4BCL 3BCL JRNL AUTH D.E.TRONRUD,B.W.MATTHEWS JRNL TITL REFINEMENT OF THE STRUCTURE OF A WATER-SOLUBLE ANTENNA JRNL TITL 2 COMPLEX FROM GREEN PHOTOSYNTHETIC BACTERIA BY INCORPORATION JRNL TITL 3 OF THE CHEMICALLY DETERMINED AMINO ACID SEQUENCE JRNL EDIT J.DEISENHOFER, J.R.NORRIS JRNL REF PHOTOSYNTHETIC REACTION V. 1 13 1993 JRNL REF 2 CENTER JRNL PUBL NEW YORK : ACADEMIC PRESS JRNL REFN ISSN 0-12-208661-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.E.TRONRUD,M.F.SCHMID,B.W.MATTHEWS REMARK 1 TITL STRUCTURE AND X-RAY AMINO ACID SEQUENCE OF A REMARK 1 TITL 2 BACTERIOCHLOROPHYLL A PROTEIN FROM PROSTHECOCHLORIS REMARK 1 TITL 3 AESTUARII REFINED AT 1.9 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 188 443 1986 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.F.SCHMID,D.E.TRONRUD,B.W.MATTHEWS REMARK 1 TITL STRUCTURAL STUDIES OF A BACTERIOCHLOROPHYLL-CONTAINING REMARK 1 TITL 2 PROTEIN REMARK 1 REF CHEM.SCR. V. 21 69 1983 REMARK 1 REFN ISSN 0004-2056 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.W.MATTHEWS REMARK 1 TITL LIPID-PROTEIN INTERACTIONS IN A REMARK 1 TITL 2 BACTERIOCHLOROPHYLL-CONTAINING PROTEIN REMARK 1 EDIT P.C.JOST, O.H.GRIFFITH REMARK 1 REF LIPID-PROTEIN INTERACTIONS V. 1 1 1982 REMARK 1 PUBL NEW YORK : WILEY REMARK 1 REFN REMARK 1 REFERENCE 4 REMARK 1 AUTH B.W.MATTHEWS,R.E.FENNA REMARK 1 TITL STRUCTURE OF A GREEN BACTERIOCHLOROPHYLL PROTEIN REMARK 1 REF ACC.CHEM.RES. V. 13 309 1980 REMARK 1 REFN ISSN 0001-4842 REMARK 1 REFERENCE 5 REMARK 1 AUTH B.W.MATTHEWS,R.E.FENNA,M.C.BOLOGNESI,M.F.SCHMID,J.M.OLSON REMARK 1 TITL STRUCTURE OF A BACTERIOCHLOROPHYLL A-PROTEIN FROM THE GREEN REMARK 1 TITL 2 PHOTOSYNTHETIC BACTERIUM PROSTHECOCHLORIS AESTUARII REMARK 1 REF J.MOL.BIOL. V. 131 259 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.M.OLSON REMARK 1 TITL BACTERIOCHLOROPHYLL A-PROTEIN FROM GREEN BACTERIA REMARK 1 EDIT R.K.CLAYTON, W.R.SISTROM REMARK 1 REF THE PHOTOSYNTHETIC BACTERIA 161 1978 REMARK 1 PUBL NEW YORK : PLENUM PRESS REMARK 1 REFN REMARK 1 REFERENCE 7 REMARK 1 AUTH R.E.FENNA,L.F.TEN EYCK,B.W.MATTHEWS REMARK 1 TITL ATOMIC COORDINATES FOR THE CHLOROPHYLL CORE OF A REMARK 1 TITL 2 BACTERIOCHLOROPHYLL A-PROTEIN FROM GREEN PHOTOSYNTHETIC REMARK 1 TITL 3 BACTERIA REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 75 751 1977 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 8 REMARK 1 AUTH B.W.MATTHEWS,R.E.FENNA,S.J.REMINGTON REMARK 1 TITL AN EVALUATION OF ELECTRON MICROGRAPHS OF BACTERIOCHLOROPHYLL REMARK 1 TITL 2 A-PROTEIN CRYSTALS IN TERMS OF THE STRUCTURE DETERMINED BY REMARK 1 TITL 3 X-RAY CRYSTALLOGRAPHY REMARK 1 REF J.ULTRASTRUCT.RES. V. 58 316 1977 REMARK 1 REFN ISSN 0022-5320 REMARK 1 REFERENCE 9 REMARK 1 AUTH R.E.FENNA,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF A BACTERIOCHLOROPHYLL A-PROTEIN FROM REMARK 1 TITL 2 PROSTHECOCHLORIS AESTUARII REMARK 1 REF BROOKHAVEN SYMP.BIOL. V. 28 170 1976 REMARK 1 REFN ISSN 0068-2799 REMARK 1 REFERENCE 10 REMARK 1 AUTH R.E.FENNA,B.W.MATTHEWS REMARK 1 TITL CHLOROPHYLL ARRANGEMENT IN A BACTERIOCHLOROPHYLL PROTEIN REMARK 1 TITL 2 FROM CHLOROBIUM LIMICOLA REMARK 1 REF NATURE V. 258 573 1975 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT V. 4-C REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 3 NUMBER OF REFLECTIONS : 45335 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1780 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 45335 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 462 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 16.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.021 ; 0.800 ; 3306 REMARK 3 BOND ANGLES (DEGREES) : 3.347 ; 1.100 ; 4553 REMARK 3 TORSION ANGLES (DEGREES) : 19.220; 0.000 ; 1788 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.023 ; 1.000 ; 100 REMARK 3 GENERAL PLANES (A) : 0.024 ; 3.000 ; 450 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.022 ; 10.000; 8 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET SCALING REMARK 3 KSOL : 0.83 REMARK 3 BSOL : 212.30 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO V1.0 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 9 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : ADJUSTABLE COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : KODAK FILM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : OSCTST REMARK 200 DATA SCALING SOFTWARE : CCP4 (ROTAVATA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 22.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NEWREF (LYNN TEN EYCK) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CRYSTALLIZES FROM SOLUTION OF REMARK 280 14MG/ML OF PROTEIN IN 10MM TRIS.HCL BUFFER, PH 7.8, AND 1M NACL REMARK 280 AND 5% (W/V) NH4 SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.15000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.15000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 55.95000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 96.90824 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 111.90000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 493 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 LEU A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 59 REMARK 465 GLN A 60 REMARK 465 LYS A 61 REMARK 465 SER A 170 REMARK 465 GLY A 171 REMARK 465 GLY A 172 REMARK 465 GLY A 213 REMARK 465 GLU A 214 REMARK 465 LYS A 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 124 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 125 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 90 CD GLU A 90 OE2 0.067 REMARK 500 GLU A 163 CD GLU A 163 OE1 0.086 REMARK 500 GLU A 195 CD GLU A 195 OE1 0.104 REMARK 500 GLU A 195 CD GLU A 195 OE2 -0.072 REMARK 500 GLU A 211 CD GLU A 211 OE1 0.100 REMARK 500 GLU A 241 CD GLU A 241 OE1 0.086 REMARK 500 GLU A 246 CD GLU A 246 OE1 0.073 REMARK 500 GLU A 266 CD GLU A 266 OE2 0.082 REMARK 500 HIS A 297 CG HIS A 297 CD2 0.068 REMARK 500 GLU A 337 CD GLU A 337 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 53 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLU A 90 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP A 93 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 93 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 SER A 113 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 TYR A 124 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 TYR A 124 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 TYR A 124 O - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 MET A 139 CA - CB - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 146 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 154 CB - CG - OD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A 154 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASN A 155 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 181 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 THR A 221 CA - CB - CG2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 270 CB - CG - OD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 278 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 285 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 306 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 SER A 341 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 TYR A 364 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 364 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 -1.54 73.58 REMARK 500 TYR A 124 70.08 -163.50 REMARK 500 LEU A 153 59.86 -90.30 REMARK 500 LEU A 335 -130.46 56.15 REMARK 500 SER A 341 147.98 -174.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 16 23.0 L L OUTSIDE RANGE REMARK 500 ASN A 155 22.5 L L OUTSIDE RANGE REMARK 500 PHE A 176 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 475 DISTANCE = 8.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 367 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 110 NE2 REMARK 620 2 BCL A 367 NA 95.4 REMARK 620 3 BCL A 367 NB 102.1 89.5 REMARK 620 4 BCL A 367 NC 106.5 157.4 91.3 REMARK 620 5 BCL A 367 ND 100.0 86.5 157.8 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 368 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 BCL A 368 NA 100.5 REMARK 620 3 BCL A 368 NB 98.8 90.9 REMARK 620 4 BCL A 368 NC 95.3 163.7 90.5 REMARK 620 5 BCL A 368 ND 102.4 91.2 157.9 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 290 NE2 REMARK 620 2 BCL A 369 NA 94.3 REMARK 620 3 BCL A 369 NB 98.7 86.3 REMARK 620 4 BCL A 369 NC 105.1 160.5 92.0 REMARK 620 5 BCL A 369 ND 107.0 89.0 154.1 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 370 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 297 ND1 REMARK 620 2 BCL A 370 NA 92.9 REMARK 620 3 BCL A 370 NB 101.0 90.7 REMARK 620 4 BCL A 370 NC 109.6 157.2 88.9 REMARK 620 5 BCL A 370 ND 105.0 84.0 153.7 86.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 371 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 298 NE2 REMARK 620 2 BCL A 371 NA 104.4 REMARK 620 3 BCL A 371 NB 106.5 88.9 REMARK 620 4 BCL A 371 NC 100.1 154.9 89.1 REMARK 620 5 BCL A 371 ND 104.0 86.3 149.3 82.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 373 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 242 O REMARK 620 2 BCL A 373 NA 103.1 REMARK 620 3 BCL A 373 NB 88.7 89.2 REMARK 620 4 BCL A 373 NC 103.2 153.5 88.3 REMARK 620 5 BCL A 373 ND 114.5 86.6 156.7 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 372 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 386 O REMARK 620 2 BCL A 372 NA 99.6 REMARK 620 3 BCL A 372 NB 104.9 89.0 REMARK 620 4 BCL A 372 NC 105.0 154.9 89.1 REMARK 620 5 BCL A 372 ND 96.1 87.7 159.0 85.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 373 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EOJ RELATED DB: PDB DBREF 4BCL A 1 366 UNP P11741 BCPA_PROAE 1 366 SEQADV 4BCL SER A 117 UNP P11741 GLN 117 CONFLICT SEQRES 1 A 366 ALA LEU PHE GLY THR LYS ASP THR THR THR ALA HIS SER SEQRES 2 A 366 ASP TYR GLU ILE ILE LEU GLU GLY GLY SER SER SER TRP SEQRES 3 A 366 GLY GLN VAL LYS GLY ARG ALA LYS VAL ASN VAL PRO ALA SEQRES 4 A 366 ALA ILE PRO LEU LEU PRO THR ASP CYS ASN ILE ARG ILE SEQRES 5 A 366 ASP ALA LYS PRO LEU ASP ALA GLN LYS GLY VAL VAL ARG SEQRES 6 A 366 PHE THR THR LYS ILE GLU SER VAL VAL ASP SER VAL LYS SEQRES 7 A 366 ASN THR LEU ASN VAL GLU VAL ASP ILE ALA ASN GLU THR SEQRES 8 A 366 LYS ASP ARG ARG ILE ALA VAL GLY GLU GLY SER LEU SER SEQRES 9 A 366 VAL GLY ASP PHE SER HIS SER PHE SER PHE GLU GLY SER SEQRES 10 A 366 VAL VAL ASN MET TYR TYR TYR ARG SER ASP ALA VAL ARG SEQRES 11 A 366 ARG ASN ILE PRO ASN PRO ILE TYR MET GLN GLY ARG GLN SEQRES 12 A 366 PHE HIS ASP ILE LEU MET LYS VAL PRO LEU ASP ASN ASN SEQRES 13 A 366 ASP LEU VAL ASP THR TRP GLU GLY PHE GLN GLN SER ILE SEQRES 14 A 366 SER GLY GLY GLY ALA ASN PHE GLY ASP TRP ILE ARG GLU SEQRES 15 A 366 PHE TRP PHE ILE GLY PRO ALA PHE ALA ALA ILE ASN GLU SEQRES 16 A 366 GLY GLY GLN ARG ILE SER PRO ILE VAL VAL ASN SER SER SEQRES 17 A 366 ASN VAL GLU GLY GLY GLU LYS GLY PRO VAL GLY VAL THR SEQRES 18 A 366 ARG TRP LYS PHE SER HIS ALA GLY SER GLY VAL VAL ASP SEQRES 19 A 366 SER ILE SER ARG TRP THR GLU LEU PHE PRO VAL GLU GLN SEQRES 20 A 366 LEU ASN LYS PRO ALA SER ILE GLU GLY GLY PHE ARG SER SEQRES 21 A 366 ASP SER GLN GLY ILE GLU VAL LYS VAL ASP GLY ASN LEU SEQRES 22 A 366 PRO GLY VAL SER ARG ASP ALA GLY GLY GLY LEU ARG ARG SEQRES 23 A 366 ILE LEU ASN HIS PRO LEU ILE PRO LEU VAL HIS HIS GLY SEQRES 24 A 366 MET VAL GLY LYS PHE ASN ASP PHE THR VAL ASP THR GLN SEQRES 25 A 366 LEU LYS ILE VAL LEU PRO LYS GLY TYR LYS ILE ARG TYR SEQRES 26 A 366 ALA ALA PRO GLN PHE ARG SER GLN ASN LEU GLU GLU TYR SEQRES 27 A 366 ARG TRP SER GLY GLY ALA TYR ALA ARG TRP VAL GLU HIS SEQRES 28 A 366 VAL CYS LYS GLY GLY THR GLY GLN PHE GLU VAL LEU TYR SEQRES 29 A 366 ALA GLN HET BCL A 367 66 HET BCL A 368 66 HET BCL A 369 66 HET BCL A 370 66 HET BCL A 371 66 HET BCL A 372 66 HET BCL A 373 66 HETNAM BCL BACTERIOCHLOROPHYLL A FORMUL 2 BCL 7(C55 H74 MG N4 O6) FORMUL 9 HOH *122(H2 O) HELIX 1 1 ASP A 127 ARG A 130 1 4 HELIX 2 2 ASN A 156 SER A 168 1 13 HELIX 3 3 PHE A 176 TRP A 184 1 9 HELIX 4 4 GLY A 187 GLU A 195 5 9 HELIX 5 5 ASP A 234 SER A 237 1 4 HELIX 6 6 VAL A 245 GLN A 247 5 3 HELIX 7 7 LEU A 292 MET A 300 1 9 HELIX 8 8 GLY A 343 LYS A 354 1 12 SHEET 1 A15 GLN A 198 ILE A 200 0 SHEET 2 A15 VAL A 218 GLY A 229 -1 N ALA A 228 O ARG A 199 SHEET 3 A15 GLY A 141 PRO A 152 -1 N VAL A 151 O GLY A 219 SHEET 4 A15 PHE A 108 TYR A 122 -1 N MET A 121 O ARG A 142 SHEET 5 A15 ARG A 94 VAL A 105 -1 N VAL A 105 O PHE A 108 SHEET 6 A15 VAL A 77 ASN A 89 -1 N ALA A 88 O ILE A 96 SHEET 7 A15 VAL A 63 VAL A 74 -1 N VAL A 74 O VAL A 77 SHEET 8 A15 THR A 46 ASP A 58 -1 N ASP A 58 O VAL A 63 SHEET 9 A15 ALA A 252 SER A 260 -1 N SER A 260 O THR A 46 SHEET 10 A15 ILE A 265 LEU A 273 -1 N ASN A 272 O SER A 253 SHEET 11 A15 GLY A 27 VAL A 35 -1 N VAL A 35 O ILE A 265 SHEET 12 A15 THR A 10 LEU A 19 -1 N ILE A 18 O GLN A 28 SHEET 13 A15 THR A 308 VAL A 316 1 N THR A 308 O ALA A 11 SHEET 14 A15 GLU A 337 SER A 341 -1 N TRP A 340 O LEU A 313 SHEET 15 A15 SER A 332 ASN A 334 -1 N ASN A 334 O GLU A 337 SHEET 1 B 2 VAL A 204 GLU A 211 0 SHEET 2 B 2 VAL A 218 LYS A 224 -1 N LYS A 224 O VAL A 204 SHEET 1 C 2 SER A 277 GLY A 281 0 SHEET 2 C 2 LEU A 284 ILE A 287 -1 N ARG A 286 O ARG A 278 SHEET 1 D 2 LYS A 322 ALA A 327 0 SHEET 2 D 2 GLU A 361 ALA A 365 -1 N ALA A 365 O LYS A 322 LINK MG BCL A 367 NE2 HIS A 110 1555 1555 2.13 LINK MG BCL A 368 NE2 HIS A 145 1555 1555 2.12 LINK MG BCL A 369 NE2 HIS A 290 1555 1555 2.08 LINK MG BCL A 370 ND1 HIS A 297 1555 1555 2.04 LINK MG BCL A 371 NE2 HIS A 298 1555 1555 2.11 LINK MG BCL A 373 O LEU A 242 1555 1555 2.02 LINK MG BCL A 372 O HOH A 386 1555 1555 1.91 CISPEP 1 LEU A 44 PRO A 45 0 -1.30 CISPEP 2 ALA A 327 PRO A 328 0 7.36 SITE 1 AC1 17 LEU A 103 PHE A 108 HIS A 110 PHE A 112 SITE 2 AC1 17 SER A 126 VAL A 129 MET A 149 VAL A 151 SITE 3 AC1 17 LEU A 158 THR A 161 TRP A 162 PHE A 165 SITE 4 AC1 17 TRP A 184 VAL A 205 BCL A 368 BCL A 372 SITE 5 AC1 17 HOH A 463 SITE 1 AC2 18 ILE A 52 PHE A 66 VAL A 85 ARG A 95 SITE 2 AC2 18 ILE A 96 ALA A 97 VAL A 118 GLN A 143 SITE 3 AC2 18 HIS A 145 TRP A 184 HIS A 227 SER A 235 SITE 4 AC2 18 TRP A 239 SER A 253 BCL A 367 BCL A 370 SITE 5 AC2 18 BCL A 371 BCL A 373 SITE 1 AC3 13 TYR A 15 ILE A 17 LEU A 288 HIS A 290 SITE 2 AC3 13 PRO A 291 PRO A 294 HIS A 298 TYR A 345 SITE 3 AC3 13 TRP A 348 PHE A 360 BCL A 371 BCL A 373 SITE 4 AC3 13 HOH A 394 SITE 1 AC4 16 ALA A 40 TYR A 138 ILE A 186 PRO A 188 SITE 2 AC4 16 ALA A 189 GLN A 198 ILE A 293 HIS A 297 SITE 3 AC4 16 HIS A 298 MET A 300 VAL A 301 BCL A 368 SITE 4 AC4 16 BCL A 371 BCL A 372 BCL A 373 HOH A 408 SITE 1 AC5 19 ALA A 11 TYR A 15 ALA A 33 PRO A 38 SITE 2 AC5 19 ALA A 39 ALA A 40 ILE A 41 PHE A 258 SITE 3 AC5 19 SER A 260 ILE A 265 HIS A 298 VAL A 301 SITE 4 AC5 19 GLY A 302 ASN A 305 BCL A 368 BCL A 369 SITE 5 AC5 19 BCL A 370 BCL A 373 HOH A 471 SITE 1 AC6 18 SER A 72 VAL A 74 ASN A 79 VAL A 105 SITE 2 AC6 18 PHE A 114 VAL A 129 ILE A 133 PRO A 136 SITE 3 AC6 18 ILE A 137 TYR A 138 GLN A 140 PHE A 183 SITE 4 AC6 18 TRP A 184 ILE A 186 BCL A 367 BCL A 370 SITE 5 AC6 18 HOH A 386 HOH A 421 SITE 1 AC7 14 ALA A 54 VAL A 64 PHE A 66 SER A 235 SITE 2 AC7 14 ARG A 238 LEU A 242 PHE A 243 PRO A 244 SITE 3 AC7 14 PRO A 291 BCL A 368 BCL A 369 BCL A 370 SITE 4 AC7 14 BCL A 371 HOH A 406 CRYST1 111.900 111.900 98.300 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008937 0.005160 0.000000 0.00000 SCALE2 0.000000 0.010319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010173 0.00000 MASTER 534 0 7 8 21 0 32 6 0 0 0 29 END