HEADER SIGNALING PROTEIN 13-AUG-12 4B6I TITLE CRYSTAL STRUCTURE RAP2B (SMA2266) FROM SERRATIA MARCESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMA2266; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.SRIKANNATHASAN,W.N.HUNTER REVDAT 5 05-JUL-17 4B6I 1 REMARK REVDAT 4 17-JUL-13 4B6I 1 JRNL REVDAT 3 03-OCT-12 4B6I 1 JRNL REVDAT 2 19-SEP-12 4B6I 1 JRNL REVDAT 1 22-AUG-12 4B6I 0 JRNL AUTH G.ENGLISH,K.TRUNK,V.A.RAO,V.SRIKANNATHASAN,W.N.HUNTER, JRNL AUTH 2 S.J.COULTHURST JRNL TITL NEW SECRETED TOXINS AND IMMUNITY PROTEINS ENCODED WITHIN THE JRNL TITL 2 TYPE VI SECRETION SYSTEM GENE CLUSTER OF SERRATIA JRNL TITL 3 MARCESCENS. JRNL REF MOL.MICROBIOL. V. 86 921 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22957938 JRNL DOI 10.1111/MMI.12028 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3263 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2218 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4391 ; 1.813 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5411 ; 1.053 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 5.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;42.135 ;25.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;16.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3686 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 642 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7888 49.1979 11.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0550 REMARK 3 T33: 0.0216 T12: 0.0157 REMARK 3 T13: -0.0056 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.2211 L22: 1.7076 REMARK 3 L33: 1.3593 L12: -1.0270 REMARK 3 L13: -0.3686 L23: 0.2585 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: -0.0522 S13: 0.0072 REMARK 3 S21: 0.0435 S22: 0.0739 S23: -0.0261 REMARK 3 S31: 0.1240 S32: 0.1599 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4092 16.6246 19.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0058 REMARK 3 T33: 0.0269 T12: 0.0137 REMARK 3 T13: -0.0178 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.3727 L22: 2.0856 REMARK 3 L33: 2.2137 L12: -0.4490 REMARK 3 L13: 0.7163 L23: -0.3685 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: 0.0350 S13: -0.1320 REMARK 3 S21: -0.0941 S22: 0.0071 S23: 0.0887 REMARK 3 S31: 0.2519 S32: 0.0808 S33: -0.0588 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 18 C 119 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3218 32.5222 14.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0241 REMARK 3 T33: 0.0131 T12: 0.0136 REMARK 3 T13: -0.0158 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9593 L22: 2.1276 REMARK 3 L33: 1.0716 L12: -0.0538 REMARK 3 L13: 0.0124 L23: 0.1552 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.0386 S13: -0.0155 REMARK 3 S21: -0.1985 S22: -0.0659 S23: 0.1564 REMARK 3 S31: 0.0141 S32: -0.0316 S33: -0.0229 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 18 D 119 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3895 54.2140 16.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0210 REMARK 3 T33: 0.0294 T12: 0.0069 REMARK 3 T13: 0.0174 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.5423 L22: 1.2867 REMARK 3 L33: 1.4159 L12: 0.1173 REMARK 3 L13: 0.0746 L23: 0.1726 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.1084 S13: 0.1159 REMARK 3 S21: -0.0129 S22: -0.0193 S23: 0.0271 REMARK 3 S31: 0.0331 S32: 0.0253 S33: 0.0407 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 10.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 44.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LICL2, 20% PEG 6K, 0.1 M CITRIC REMARK 280 ACID PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.09750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.09750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D2006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 HIS A 19 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2026 O HOH C 2027 1.60 REMARK 500 CG ASP C 71 O HOH C 2032 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2012 O HOH C 2015 4565 1.56 REMARK 500 O HOH B 2016 O HOH C 2018 4565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 30 CD GLU C 30 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 MET C 70 CG - SD - CE ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG D 57 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET D 70 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 92 123.27 89.47 REMARK 500 SER C 118 -130.93 -112.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 118 LYS A 119 -146.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 4B6I A 18 119 PDB 4B6I 4B6I 18 119 DBREF 4B6I B 18 119 PDB 4B6I 4B6I 18 119 DBREF 4B6I C 18 119 PDB 4B6I 4B6I 18 119 DBREF 4B6I D 18 119 PDB 4B6I 4B6I 18 119 SEQRES 1 A 102 GLY HIS MET GLU ASN SER LEU ASN ALA LEU SER GLN GLU SEQRES 2 A 102 ALA LEU TYR LYS ASN TRP LEU THR SER ARG CYS ILE GLY SEQRES 3 A 102 LYS SER THR ASP SER GLU ARG THR LYS GLN ASP ALA PHE SEQRES 4 A 102 ARG SER ALA SER ALA TYR LEU GLU LEU SER LYS LEU PRO SEQRES 5 A 102 MET ASP ALA PHE GLU GLN GLY GLU LYS LEU ALA GLU GLN SEQRES 6 A 102 TYR ALA ASN LYS ASN SER GLN GLY SER VAL GLN GLY THR SEQRES 7 A 102 TYR HIS THR LEU ASP CYS LEU SER LEU GLN ASN ALA SER SEQRES 8 A 102 GLU ALA GLU THR ILE PHE GLU ARG TYR SER LYS SEQRES 1 B 102 GLY HIS MET GLU ASN SER LEU ASN ALA LEU SER GLN GLU SEQRES 2 B 102 ALA LEU TYR LYS ASN TRP LEU THR SER ARG CYS ILE GLY SEQRES 3 B 102 LYS SER THR ASP SER GLU ARG THR LYS GLN ASP ALA PHE SEQRES 4 B 102 ARG SER ALA SER ALA TYR LEU GLU LEU SER LYS LEU PRO SEQRES 5 B 102 MET ASP ALA PHE GLU GLN GLY GLU LYS LEU ALA GLU GLN SEQRES 6 B 102 TYR ALA ASN LYS ASN SER GLN GLY SER VAL GLN GLY THR SEQRES 7 B 102 TYR HIS THR LEU ASP CYS LEU SER LEU GLN ASN ALA SER SEQRES 8 B 102 GLU ALA GLU THR ILE PHE GLU ARG TYR SER LYS SEQRES 1 C 102 GLY HIS MET GLU ASN SER LEU ASN ALA LEU SER GLN GLU SEQRES 2 C 102 ALA LEU TYR LYS ASN TRP LEU THR SER ARG CYS ILE GLY SEQRES 3 C 102 LYS SER THR ASP SER GLU ARG THR LYS GLN ASP ALA PHE SEQRES 4 C 102 ARG SER ALA SER ALA TYR LEU GLU LEU SER LYS LEU PRO SEQRES 5 C 102 MET ASP ALA PHE GLU GLN GLY GLU LYS LEU ALA GLU GLN SEQRES 6 C 102 TYR ALA ASN LYS ASN SER GLN GLY SER VAL GLN GLY THR SEQRES 7 C 102 TYR HIS THR LEU ASP CYS LEU SER LEU GLN ASN ALA SER SEQRES 8 C 102 GLU ALA GLU THR ILE PHE GLU ARG TYR SER LYS SEQRES 1 D 102 GLY HIS MET GLU ASN SER LEU ASN ALA LEU SER GLN GLU SEQRES 2 D 102 ALA LEU TYR LYS ASN TRP LEU THR SER ARG CYS ILE GLY SEQRES 3 D 102 LYS SER THR ASP SER GLU ARG THR LYS GLN ASP ALA PHE SEQRES 4 D 102 ARG SER ALA SER ALA TYR LEU GLU LEU SER LYS LEU PRO SEQRES 5 D 102 MET ASP ALA PHE GLU GLN GLY GLU LYS LEU ALA GLU GLN SEQRES 6 D 102 TYR ALA ASN LYS ASN SER GLN GLY SER VAL GLN GLY THR SEQRES 7 D 102 TYR HIS THR LEU ASP CYS LEU SER LEU GLN ASN ALA SER SEQRES 8 D 102 GLU ALA GLU THR ILE PHE GLU ARG TYR SER LYS FORMUL 5 HOH *160(H2 O) HELIX 1 1 MET A 20 ALA A 26 1 7 HELIX 2 2 SER A 28 THR A 46 1 19 HELIX 3 3 SER A 48 SER A 66 1 19 HELIX 4 4 PRO A 69 ASN A 85 1 17 HELIX 5 5 TYR A 96 SER A 103 1 8 HELIX 6 6 LEU A 104 ASN A 106 5 3 HELIX 7 7 ALA A 107 LYS A 119 1 13 HELIX 8 8 SER B 28 THR B 46 1 19 HELIX 9 9 SER B 48 SER B 66 1 19 HELIX 10 10 PRO B 69 ASN B 85 1 17 HELIX 11 11 TYR B 96 SER B 103 1 8 HELIX 12 12 LEU B 104 ASN B 106 5 3 HELIX 13 13 ALA B 107 ARG B 116 1 10 HELIX 14 14 GLY C 18 ASN C 25 1 8 HELIX 15 15 SER C 28 THR C 46 1 19 HELIX 16 16 SER C 48 LEU C 65 1 18 HELIX 17 17 MET C 70 ASN C 85 1 16 HELIX 18 18 TYR C 96 SER C 103 1 8 HELIX 19 19 LEU C 104 ASN C 106 5 3 HELIX 20 20 ALA C 107 SER C 118 1 12 HELIX 21 21 GLY D 18 ASN D 25 1 8 HELIX 22 22 SER D 28 THR D 46 1 19 HELIX 23 23 SER D 48 SER D 66 1 19 HELIX 24 24 PRO D 69 ASN D 85 1 17 HELIX 25 25 TYR D 96 SER D 103 1 8 HELIX 26 26 LEU D 104 ASN D 106 5 3 HELIX 27 27 ALA D 107 LYS D 119 1 13 SSBOND 1 CYS A 41 CYS A 101 1555 1555 2.07 SSBOND 2 CYS B 41 CYS B 101 1555 1555 2.08 SSBOND 3 CYS C 41 CYS C 101 1555 1555 2.08 SSBOND 4 CYS D 41 CYS D 101 1555 1555 2.04 CRYST1 48.055 56.894 122.195 90.00 90.00 90.00 P 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008184 0.00000 MASTER 445 0 0 27 0 0 0 6 0 0 0 32 END