HEADER HYDROLASE 04-JUL-12 4B0P TITLE CRYSTAL STRUCTURE OF SOMAN-AGED HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX TITLE 2 WITH METHYL 2-(PENTAFLUOROBENZYLOXYIMINO)PYRIDINIUM CAVEAT 4B0P NAG B 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 2181 C1 HAS CAVEAT 2 4B0P INCORRECT CHIRALITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 29-557; COMPND 5 SYNONYM: BUTYRYLCHOLINESTERASE, ACYLCHOLINE ACYLHYDROLASE, COMPND 6 BUTYRYLCHOLINE ESTERASE, CHOLINE ESTERASE II, PSEUDOCHOLINESTERASE; COMPND 7 EC: 3.1.1.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO-K1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGS KEYWDS HYDROLASE, AGING EXPDTA X-RAY DIFFRACTION AUTHOR M.WANDHAMMER,M.DE KONING,M.VAN GROL,D.NOORT,M.GOELDNER,F.NACHON REVDAT 4 29-JUL-20 4B0P 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 17-APR-13 4B0P 1 JRNL REVDAT 2 17-OCT-12 4B0P 1 JRNL REVDAT 1 29-AUG-12 4B0P 0 JRNL AUTH M.WANDHAMMER,M.DE KONING,M.VAN GROL,M.LOIODICE,L.SAUREL, JRNL AUTH 2 D.NOORT,M.GOELDNER,F.NACHON JRNL TITL A STEP TOWARD THE REACTIVATION OF AGED CHOLINESTERASES JRNL TITL 2 -CRYSTAL STRUCTURE OF LIGANDS BINDING TO AGED HUMAN JRNL TITL 3 BUTYRYLCHOLINESTERASE JRNL REF CHEM.BIOL.INTERACT V. 203 19 2013 JRNL REFN ISSN 0009-2797 JRNL PMID 22922115 JRNL DOI 10.1016/J.CBI.2012.08.005 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 27798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8808 - 4.9939 0.95 3392 141 0.1684 0.2111 REMARK 3 2 4.9939 - 3.9664 0.98 3345 139 0.1283 0.1378 REMARK 3 3 3.9664 - 3.4658 0.99 3324 139 0.1471 0.2062 REMARK 3 4 3.4658 - 3.1493 1.00 3353 140 0.1753 0.2610 REMARK 3 5 3.1493 - 2.9237 1.00 3331 139 0.1930 0.2779 REMARK 3 6 2.9237 - 2.7515 1.00 3322 138 0.1994 0.2422 REMARK 3 7 2.7515 - 2.6137 1.00 3313 138 0.2071 0.2914 REMARK 3 8 2.6137 - 2.5000 0.99 3306 138 0.1969 0.2461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 58.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4535 REMARK 3 ANGLE : 1.259 6175 REMARK 3 CHIRALITY : 0.091 671 REMARK 3 PLANARITY : 0.005 782 REMARK 3 DIHEDRAL : 21.089 1684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 3 THROUGH 242) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6377 17.6955 37.8462 REMARK 3 T TENSOR REMARK 3 T11: 0.3115 T22: 0.3797 REMARK 3 T33: 0.2918 T12: -0.0748 REMARK 3 T13: -0.0363 T23: -0.0817 REMARK 3 L TENSOR REMARK 3 L11: 1.9780 L22: 1.8861 REMARK 3 L33: 2.3284 L12: 0.2613 REMARK 3 L13: 0.3384 L23: 0.3588 REMARK 3 S TENSOR REMARK 3 S11: 0.1645 S12: -0.4942 S13: 0.1018 REMARK 3 S21: 0.4672 S22: -0.0819 S23: -0.0560 REMARK 3 S31: -0.1036 S32: 0.0094 S33: -0.0681 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 243 THROUGH 322) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8139 3.2360 33.1803 REMARK 3 T TENSOR REMARK 3 T11: 0.3971 T22: 0.4499 REMARK 3 T33: 0.4974 T12: 0.0071 REMARK 3 T13: -0.1547 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.7067 L22: 1.8618 REMARK 3 L33: 3.0680 L12: 0.0063 REMARK 3 L13: 1.3526 L23: -0.3177 REMARK 3 S TENSOR REMARK 3 S11: 0.1511 S12: -0.2532 S13: -0.3263 REMARK 3 S21: 0.4397 S22: -0.0796 S23: -0.5735 REMARK 3 S31: 0.3436 S32: 0.6100 S33: -0.1093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 323 THROUGH 529) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4078 19.0139 12.2258 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.2907 REMARK 3 T33: 0.2484 T12: -0.0466 REMARK 3 T13: -0.0545 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 3.1868 L22: 2.3365 REMARK 3 L33: 2.2759 L12: -0.2495 REMARK 3 L13: -0.5045 L23: 0.9473 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.2242 S13: 0.1411 REMARK 3 S21: -0.3737 S22: 0.1141 S23: -0.0932 REMARK 3 S31: -0.2717 S32: 0.1716 S33: -0.1257 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 1178 THROUGH 1178) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0479 29.6894 32.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.1275 REMARK 3 T33: 0.2615 T12: -0.1003 REMARK 3 T13: 0.0236 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 8.6804 L22: 1.2667 REMARK 3 L33: 4.4780 L12: 2.1396 REMARK 3 L13: 5.7230 L23: 0.6878 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.3860 S13: -0.3821 REMARK 3 S21: -0.0075 S22: 0.4091 S23: -0.0882 REMARK 3 S31: 0.1327 S32: 0.3411 S33: -0.4192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290052875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00407 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1P0I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULFATE, 0.1 M MES REMARK 280 BUFFER PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 77.11500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.93000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 77.11500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.93000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 77.11500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.93000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 77.11500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.93000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.11500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.93000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 77.11500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.93000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 77.11500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.93000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 77.11500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 77.11500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 77.11500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 77.11500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.93000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 237 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3071 O HOH A 3123 2.10 REMARK 500 NH1 ARG A 240 OE2 GLU A 257 2.12 REMARK 500 ND2 ASN A 256 C2 NAG A 2188 2.18 REMARK 500 NZ LYS A 262 O HOH A 3098 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 -4.12 75.06 REMARK 500 LYS A 51 141.91 88.46 REMARK 500 ASP A 54 166.56 63.39 REMARK 500 ASP A 54 169.42 58.06 REMARK 500 ASN A 106 56.65 -155.05 REMARK 500 ALA A 162 79.25 -158.03 REMARK 500 GLU A 257 -33.69 -39.52 REMARK 500 ASP A 297 -73.43 -132.41 REMARK 500 TRP A 376 151.81 -47.70 REMARK 500 VAL A 377 60.79 -118.80 REMARK 500 ASP A 378 46.56 -99.71 REMARK 500 GLN A 380 73.80 -115.61 REMARK 500 PHE A 398 -57.81 -134.10 REMARK 500 ASN A 485 58.78 -105.93 REMARK 500 ASN A 486 34.71 35.59 REMARK 500 THR A 496 -72.45 -68.54 REMARK 500 GLU A 506 -107.16 -96.34 REMARK 500 GLU A 506 -109.72 -93.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1171 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SBG A 198 O2 REMARK 620 2 HOH A3021 O 86.9 REMARK 620 3 HOH A3064 O 144.4 74.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2190 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 443 OE1 REMARK 620 2 HOH A3145 O 77.6 REMARK 620 3 HOH A3187 O 111.2 117.6 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EHO RELATED DB: PDB REMARK 900 MODEL OF (-)-COCAINE-BOUND BCHE COMPLEX. REMARK 900 RELATED ID: 1EHQ RELATED DB: PDB REMARK 900 MODEL OF (+)-COCAINE-BOUND BCHE COMPLEX REMARK 900 RELATED ID: 1KCJ RELATED DB: PDB REMARK 900 MODEL OF (-)-COCAINE-BOUND (-)-COCAINE HYDROLASE COMPLEX REMARK 900 RELATED ID: 1P0I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN BUTYRYL CHOLINESTERASE REMARK 900 RELATED ID: 1P0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN BUTYRYL CHOLINESTERASE INCOMPLEX WITH A REMARK 900 CHOLINE MOLECULE REMARK 900 RELATED ID: 1P0P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOMAN-AGED HUMAN BUTYRYLCHOLINESTERASE IN REMARK 900 COMPLEX WITH THE SUBSTRATE ANALOGBUTYRYLTHIOCHOLINE REMARK 900 RELATED ID: 1P0Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOMAN-AGED HUMAN BUTYRYL CHOLINESTERASE REMARK 900 RELATED ID: 1XLU RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF DI-ISOPROPYL-PHOSPHORO-FLUORIDATE ( DFP) REMARK 900 INHIBITED BUTYRYLCHOLINESTERASE AFTER AGING REMARK 900 RELATED ID: 1XLV RELATED DB: PDB REMARK 900 ETHYLPHOSPHORYLATED BUTYRYLCHOLINESTERASE (AGED) OBTAINEDBY REMARK 900 REACTION WITH ECHOTHIOPHATE REMARK 900 RELATED ID: 1XLW RELATED DB: PDB REMARK 900 DIETHYLPHOSPHORYLATED BUTYRYLCHOLINESTERASE (NONAGED)OBTAINED BY REMARK 900 REACTION WITH ECHOTHIOPHATE REMARK 900 RELATED ID: 2J4C RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH 10MM HGCL2 REMARK 900 RELATED ID: 2WID RELATED DB: PDB REMARK 900 AGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA1 REMARK 900 RELATED ID: 2WIF RELATED DB: PDB REMARK 900 AGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA1 REMARK 900 RELATED ID: 2WIG RELATED DB: PDB REMARK 900 NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA4 REMARK 900 RELATED ID: 2WIJ RELATED DB: PDB REMARK 900 NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA5 REMARK 900 RELATED ID: 2WIK RELATED DB: PDB REMARK 900 NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA6 REMARK 900 RELATED ID: 2WIL RELATED DB: PDB REMARK 900 AGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA5 REMARK 900 RELATED ID: 2WSL RELATED DB: PDB REMARK 900 AGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN REMARK 900 ANALOGUE TA4 REMARK 900 RELATED ID: 2XMB RELATED DB: PDB REMARK 900 G117H MUTANT OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH SULFATE REMARK 900 RELATED ID: 2XMC RELATED DB: PDB REMARK 900 G117H MUTANT OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH REMARK 900 FLUORIDE ANION REMARK 900 RELATED ID: 2XMD RELATED DB: PDB REMARK 900 G117H MUTANT OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH REMARK 900 ECHOTHIOPHATE REMARK 900 RELATED ID: 2XMG RELATED DB: PDB REMARK 900 G117H MUTANT OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH VX REMARK 900 RELATED ID: 2XQF RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY RACEMIC REMARK 900 VX REMARK 900 RELATED ID: 2XQG RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY RACEMIC REMARK 900 VR REMARK 900 RELATED ID: 2XQI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY RACEMIC REMARK 900 CVX REMARK 900 RELATED ID: 2XQJ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY PURE REMARK 900 ENANTIOMER VX-(R) REMARK 900 RELATED ID: 2XQK RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY PURE REMARK 900 ENANTIOMER VX-(S) REMARK 900 RELATED ID: 2Y1K RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY CBDP (12H REMARK 900 SOAK): PHOSPHOSERINE ADDUCT REMARK 900 RELATED ID: 4AQD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULLY GLYCOSYLATED HUMAN BUTYRYLCHOLINESTERASE REMARK 900 RELATED ID: 4AXB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOMAN-AGED HUMAN BUTYRYLCHOLINESTERASE IN REMARK 900 COMPLEX WITH 2-PAM REMARK 900 RELATED ID: 4B0O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOMAN-AGED HUMAN BUTYRYLCHOLINESTERASE IN REMARK 900 COMPLEX WITH BENZYL PYRIDINIUM-4 -METHYLTRICHLOROACETIMIDATE DBREF 4B0P A 1 529 UNP P06276 CHLE_HUMAN 29 557 SEQADV 4B0P GLN A 17 UNP P06276 ASN 45 CONFLICT SEQADV 4B0P GLN A 384 UNP P06276 ASN 412 CONFLICT SEQADV 4B0P GLN A 455 UNP P06276 ASN 483 CONFLICT SEQADV 4B0P GLN A 481 UNP P06276 ASN 509 CONFLICT SEQRES 1 A 529 GLU ASP ASP ILE ILE ILE ALA THR LYS ASN GLY LYS VAL SEQRES 2 A 529 ARG GLY MET GLN LEU THR VAL PHE GLY GLY THR VAL THR SEQRES 3 A 529 ALA PHE LEU GLY ILE PRO TYR ALA GLN PRO PRO LEU GLY SEQRES 4 A 529 ARG LEU ARG PHE LYS LYS PRO GLN SER LEU THR LYS TRP SEQRES 5 A 529 SER ASP ILE TRP ASN ALA THR LYS TYR ALA ASN SER CYS SEQRES 6 A 529 CYS GLN ASN ILE ASP GLN SER PHE PRO GLY PHE HIS GLY SEQRES 7 A 529 SER GLU MET TRP ASN PRO ASN THR ASP LEU SER GLU ASP SEQRES 8 A 529 CYS LEU TYR LEU ASN VAL TRP ILE PRO ALA PRO LYS PRO SEQRES 9 A 529 LYS ASN ALA THR VAL LEU ILE TRP ILE TYR GLY GLY GLY SEQRES 10 A 529 PHE GLN THR GLY THR SER SER LEU HIS VAL TYR ASP GLY SEQRES 11 A 529 LYS PHE LEU ALA ARG VAL GLU ARG VAL ILE VAL VAL SER SEQRES 12 A 529 MET ASN TYR ARG VAL GLY ALA LEU GLY PHE LEU ALA LEU SEQRES 13 A 529 PRO GLY ASN PRO GLU ALA PRO GLY ASN MET GLY LEU PHE SEQRES 14 A 529 ASP GLN GLN LEU ALA LEU GLN TRP VAL GLN LYS ASN ILE SEQRES 15 A 529 ALA ALA PHE GLY GLY ASN PRO LYS SER VAL THR LEU PHE SEQRES 16 A 529 GLY GLU SBG ALA GLY ALA ALA SER VAL SER LEU HIS LEU SEQRES 17 A 529 LEU SER PRO GLY SER HIS SER LEU PHE THR ARG ALA ILE SEQRES 18 A 529 LEU GLN SER GLY SER PHE ASN ALA PRO TRP ALA VAL THR SEQRES 19 A 529 SER LEU TYR GLU ALA ARG ASN ARG THR LEU ASN LEU ALA SEQRES 20 A 529 LYS LEU THR GLY CYS SER ARG GLU ASN GLU THR GLU ILE SEQRES 21 A 529 ILE LYS CYS LEU ARG ASN LYS ASP PRO GLN GLU ILE LEU SEQRES 22 A 529 LEU ASN GLU ALA PHE VAL VAL PRO TYR GLY THR PRO LEU SEQRES 23 A 529 SER VAL ASN PHE GLY PRO THR VAL ASP GLY ASP PHE LEU SEQRES 24 A 529 THR ASP MET PRO ASP ILE LEU LEU GLU LEU GLY GLN PHE SEQRES 25 A 529 LYS LYS THR GLN ILE LEU VAL GLY VAL ASN LYS ASP GLU SEQRES 26 A 529 GLY THR ALA PHE LEU VAL TYR GLY ALA PRO GLY PHE SER SEQRES 27 A 529 LYS ASP ASN ASN SER ILE ILE THR ARG LYS GLU PHE GLN SEQRES 28 A 529 GLU GLY LEU LYS ILE PHE PHE PRO GLY VAL SER GLU PHE SEQRES 29 A 529 GLY LYS GLU SER ILE LEU PHE HIS TYR THR ASP TRP VAL SEQRES 30 A 529 ASP ASP GLN ARG PRO GLU GLN TYR ARG GLU ALA LEU GLY SEQRES 31 A 529 ASP VAL VAL GLY ASP TYR ASN PHE ILE CYS PRO ALA LEU SEQRES 32 A 529 GLU PHE THR LYS LYS PHE SER GLU TRP GLY ASN ASN ALA SEQRES 33 A 529 PHE PHE TYR TYR PHE GLU HIS ARG SER SER LYS LEU PRO SEQRES 34 A 529 TRP PRO GLU TRP MET GLY VAL MET HIS GLY TYR GLU ILE SEQRES 35 A 529 GLU PHE VAL PHE GLY LEU PRO LEU GLU ARG ARG ASP GLN SEQRES 36 A 529 TYR THR LYS ALA GLU GLU ILE LEU SER ARG SER ILE VAL SEQRES 37 A 529 LYS ARG TRP ALA ASN PHE ALA LYS TYR GLY ASN PRO GLN SEQRES 38 A 529 GLU THR GLN ASN ASN SER THR SER TRP PRO VAL PHE LYS SEQRES 39 A 529 SER THR GLU GLN LYS TYR LEU THR LEU ASN THR GLU SER SEQRES 40 A 529 THR ARG ILE MET THR LYS LEU ARG ALA GLN GLN CYS ARG SEQRES 41 A 529 PHE TRP THR SER PHE PHE PRO LYS VAL MODRES 4B0P ASN A 57 ASN GLYCOSYLATION SITE MODRES 4B0P ASN A 106 ASN GLYCOSYLATION SITE MODRES 4B0P ASN A 241 ASN GLYCOSYLATION SITE MODRES 4B0P ASN A 256 ASN GLYCOSYLATION SITE MODRES 4B0P ASN A 341 ASN GLYCOSYLATION SITE MODRES 4B0P ASN A 485 ASN GLYCOSYLATION SITE MODRES 4B0P SBG A 198 SER HET SBG A 198 10 HET NAG B 1 14 HET NAG B 2 14 HET FUL B 3 10 HET NAG C 1 14 HET NAG C 2 14 HET FUL C 3 10 HET GLY A1178 5 HET NA A1170 1 HET K A1171 1 HET MF5 A1179 22 HET NAG A2179 14 HET NAG A2180 14 HET NAG A2187 14 HET NAG A2188 14 HET NA A2190 1 HET CA A2191 1 HET CA A2192 1 HET CL A2193 1 HET CL A2194 1 HET CL A2195 1 HET CL A2196 1 HET CA A2197 1 HET CA A2198 1 HETNAM SBG O-[(S)-HYDROXY(METHYL)PHOSPHORYL]-L-SERINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM GLY GLYCINE HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETNAM MF5 1-(1-METHYLPYRIDIN-1-IUM-2-YL)-N-[[2,3,4,5,6- HETNAM 2 MF5 PENTAKIS(FLUORANYL)PHENYL]METHOXY]METHANIMINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE HETSYN MF5 METHYL2-(PENTAFLUOROBENZYLOXYIMINO)PYRIDINIUM FORMUL 1 SBG C4 H10 N O5 P FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 FUL 2(C6 H12 O5) FORMUL 4 GLY C2 H5 N O2 FORMUL 5 NA 2(NA 1+) FORMUL 6 K K 1+ FORMUL 7 MF5 C14 H10 F5 N2 O 1+ FORMUL 13 CA 4(CA 2+) FORMUL 15 CL 4(CL 1-) FORMUL 21 HOH *188(H2 O) HELIX 1 1 LEU A 38 ARG A 42 5 5 HELIX 2 2 PHE A 76 MET A 81 1 6 HELIX 3 3 LEU A 125 ASP A 129 5 5 HELIX 4 4 GLY A 130 ARG A 138 1 9 HELIX 5 5 VAL A 148 LEU A 154 1 7 HELIX 6 6 ASN A 165 ILE A 182 1 18 HELIX 7 7 ALA A 183 PHE A 185 5 3 HELIX 8 8 ALA A 199 SER A 210 1 12 HELIX 9 9 PRO A 211 HIS A 214 5 4 HELIX 10 10 SER A 235 THR A 250 1 16 HELIX 11 11 ASN A 256 ASN A 266 1 11 HELIX 12 12 ASP A 268 ALA A 277 1 10 HELIX 13 13 PHE A 278 VAL A 280 5 3 HELIX 14 14 MET A 302 LEU A 309 1 8 HELIX 15 15 GLY A 326 VAL A 331 1 6 HELIX 16 16 THR A 346 PHE A 358 1 13 HELIX 17 17 SER A 362 THR A 374 1 13 HELIX 18 18 GLU A 383 PHE A 398 1 16 HELIX 19 19 PHE A 398 GLU A 411 1 14 HELIX 20 20 PRO A 431 GLY A 435 5 5 HELIX 21 21 GLU A 441 PHE A 446 1 6 HELIX 22 22 GLY A 447 GLU A 451 5 5 HELIX 23 23 GLU A 451 GLN A 455 5 5 HELIX 24 24 THR A 457 GLY A 478 1 22 HELIX 25 25 ARG A 515 PHE A 525 1 11 HELIX 26 26 PHE A 526 VAL A 529 5 4 SHEET 1 AA 3 ILE A 5 THR A 8 0 SHEET 2 AA 3 GLY A 11 ARG A 14 -1 O GLY A 11 N THR A 8 SHEET 3 AA 3 TRP A 56 ASN A 57 1 O TRP A 56 N ARG A 14 SHEET 1 AB11 MET A 16 VAL A 20 0 SHEET 2 AB11 GLY A 23 PRO A 32 -1 O GLY A 23 N VAL A 20 SHEET 3 AB11 TYR A 94 PRO A 100 -1 O LEU A 95 N ILE A 31 SHEET 4 AB11 ILE A 140 MET A 144 -1 O VAL A 141 N TRP A 98 SHEET 5 AB11 ALA A 107 ILE A 113 1 O THR A 108 N ILE A 140 SHEET 6 AB11 GLY A 187 GLY A 196 1 N ASN A 188 O ALA A 107 SHEET 7 AB11 ARG A 219 GLN A 223 1 O ARG A 219 N LEU A 194 SHEET 8 AB11 ILE A 317 ASN A 322 1 O LEU A 318 N LEU A 222 SHEET 9 AB11 ALA A 416 PHE A 421 1 O PHE A 417 N VAL A 319 SHEET 10 AB11 LYS A 499 LEU A 503 1 O LEU A 501 N TYR A 420 SHEET 11 AB11 ARG A 509 THR A 512 -1 O ARG A 509 N THR A 502 SHEET 1 AC 2 SER A 64 CYS A 65 0 SHEET 2 AC 2 LEU A 88 SER A 89 1 N SER A 89 O SER A 64 SSBOND 1 CYS A 65 CYS A 92 1555 1555 2.04 SSBOND 2 CYS A 252 CYS A 263 1555 1555 2.04 SSBOND 3 CYS A 400 CYS A 519 1555 1555 2.05 LINK ND2 ASN A 57 C1 NAG A2179 1555 1555 1.46 LINK ND2 ASN A 106 C1 NAG A2180 1555 1555 1.46 LINK C GLU A 197 N SBG A 198 1555 1555 1.33 LINK C SBG A 198 N ALA A 199 1555 1555 1.33 LINK ND2 ASN A 241 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 256 C1 NAG A2188 1555 1555 1.44 LINK ND2 ASN A 341 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 485 C1 NAG A2187 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O6 NAG B 1 C1 FUL B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUL C 3 1555 1555 1.44 LINK SG CYS A 66 CA CA A2197 1555 1555 2.72 LINK O2 SBG A 198 K K A1171 1555 1555 3.29 LINK OE1 GLU A 443 NA NA A2190 1555 1555 2.97 LINK K K A1171 O HOH A3021 1555 1555 2.84 LINK K K A1171 O HOH A3064 1555 1555 2.86 LINK NA NA A2190 O HOH A3145 1555 1555 2.50 LINK NA NA A2190 O HOH A3187 1555 1555 2.66 CISPEP 1 ALA A 101 PRO A 102 0 -2.80 CISPEP 2 VAL A 377 ASP A 378 0 -19.12 CRYST1 154.230 154.230 133.860 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007470 0.00000 MASTER 481 0 24 26 16 0 0 6 0 0 0 41 END