HEADER CELL ADHESION 26-MAY-12 4AVI TITLE STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE TITLE 2 GROUP, IN COMPLEX WITH A METHYL ESTER OCTYL ALPHA-D- TITLE 3 MANNOSIDE AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LECTIN DOMAIN, RESIDUES 10-167; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS CELL ADHESION, BACTERIAL ADHESIN, TYPE 1 FIMBRIAE, URINARY TRACT KEYWDS 2 INFECTION, VARIABLE IMMUNOGLOBULIN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.WELLENS,M.LAHMANN,M.TOUAIBIA,J.VAUCHER,S.OSCARSON,R.ROY,H.REMAUT, AUTHOR 2 J.BOUCKAERT REVDAT 3 05-SEP-12 4AVI 1 JRNL REVDAT 2 18-JUL-12 4AVI 1 ATOM CONECT MASTER END REVDAT 1 27-JUN-12 4AVI 0 JRNL AUTH A.WELLENS,M.LAHMANN,M.TOUAIBIA,J.VAUCHER,S.OSCARSON,R.ROY, JRNL AUTH 2 H.REMAUT,J.BOUCKAERT JRNL TITL THE TYROSINE GATE AS A POTENTIAL ENTROPIC LEVER IN THE JRNL TITL 2 RECEPTOR-BINDING SITE OF THE BACTERIAL ADHESIN FIMH. JRNL REF BIOCHEMISTRY V. 51 4790 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22657089 JRNL DOI 10.1021/BI300251R REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.400 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.640 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.99 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.91 REMARK 3 NUMBER OF REFLECTIONS : 15107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1435 REMARK 3 R VALUE (WORKING SET) : 0.1398 REMARK 3 FREE R VALUE : 0.2127 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.6405 - 4.0925 1.00 2971 157 0.1284 0.1796 REMARK 3 2 4.0925 - 3.2540 1.00 2875 151 0.1283 0.1827 REMARK 3 3 3.2540 - 2.8443 1.00 2853 150 0.1380 0.2513 REMARK 3 4 2.8443 - 2.5850 1.00 2822 149 0.1624 0.2443 REMARK 3 5 2.5850 - 2.4001 1.00 2830 149 0.1775 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.319 REMARK 3 B_SOL : 30.604 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.29 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.1764 REMARK 3 B22 (A**2) : -0.1764 REMARK 3 B33 (A**2) : 0.3529 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2535 REMARK 3 ANGLE : 1.488 3489 REMARK 3 CHIRALITY : 0.109 409 REMARK 3 PLANARITY : 0.005 445 REMARK 3 DIHEDRAL : 12.307 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-12. REMARK 100 THE PDBE ID CODE IS EBI-52657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.40 REMARK 200 RESOLUTION RANGE LOW (A) : 18.64 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.6 REMARK 200 R MERGE (I) : 0.13 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.01 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.3 REMARK 200 R MERGE FOR SHELL (I) : 0.36 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VCO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LI2SO4, 100 MM TRIS PH 8.6, REMARK 280 10 MM NICL2, 0.2 M NON-DETERGENT SULFOBETAINE 201 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.13333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.13333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 99 O HOH B 2111 2.17 REMARK 500 O HOH A 2016 O HOH A 2055 2.18 REMARK 500 O HOH A 2077 O HOH A 2172 2.09 REMARK 500 O HOH A 2093 O HOH A 2095 2.02 REMARK 500 O HOH B 2036 O HOH B 2088 2.04 REMARK 500 O HOH B 2049 O HOH B 2105 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2103 O HOH B 2104 4555 2.16 REMARK 500 O HOH B 2125 O HOH B 2125 4555 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 7 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 13 132.77 -37.37 REMARK 500 TYR A 48 61.04 -150.32 REMARK 500 TYR A 137 -50.51 -126.78 REMARK 500 ASN A 138 -159.99 -141.65 REMARK 500 TYR B 48 64.89 -156.33 REMARK 500 ASN B 96 28.72 -149.19 REMARK 500 TYR B 137 -38.42 -142.93 REMARK 500 ASN B 138 -157.13 -148.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 7 12.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1160 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 HOH A2076 O 89.4 REMARK 620 3 HOH A2077 O 98.9 157.3 REMARK 620 4 HOH A2079 O 91.5 69.7 88.9 REMARK 620 5 HIS A 45 NE2 90.8 99.5 101.4 168.9 REMARK 620 6 HOH A2075 O 163.7 87.6 78.6 72.4 105.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1159 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD1 REMARK 620 2 HOH B2058 O 101.3 REMARK 620 3 HOH B2059 O 92.6 166.1 REMARK 620 4 HOH B2060 O 93.5 68.2 110.4 REMARK 620 5 HOH B2137 O 155.5 69.7 97.2 62.0 REMARK 620 6 HIS B 45 NE2 87.7 79.3 102.3 147.2 111.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XNS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XNS B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B1159 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ATT RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- REMARK 900 MANNOSIDE O-LINKED TO A PROPYNYL PARA METHOXY PHENYL REMARK 900 RELATED ID: 4AUJ RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- REMARK 900 MANNOSIDE O-LINKED TO PARA HYDROXYPROPARGYL PHENYL REMARK 900 RELATED ID: 4AUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO FIMH LECTIN DOMAIN AT 1.5 REMARK 900 A RESOLUTION REMARK 900 RELATED ID: 4AUY RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL REMARK 900 SPACE GROUP, IN COMPLEX WITH AN HYDROXYL PROPYNYL REMARK 900 PHENYL ALPHA-D-MANNOSIDE AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AV0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL REMARK 900 SPACE GROUP, IN COMPLEX WITH A METHOXY PHENYL PROPYNYL REMARK 900 ALPHA-D-MANNOSIDE AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AV4 RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- REMARK 900 MANNOSIDE O-LINKED TO A PROPYNYL PYRIDINE REMARK 900 RELATED ID: 4AV5 RELATED DB: PDB REMARK 900 STRUCTURE OF A TRICLINIC CRYSTAL OF THE FIMH LECTIN REMARK 900 DOMAIN IN COMPLEX WITH A PROPYNYL BIPHENYL ALPHA-D- REMARK 900 MANNOSIDE, AT 1.4 A RESOLUTION REMARK 900 RELATED ID: 4AVH RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL REMARK 900 SPACE GROUP, IN COMPLEX WITH A THIOALKYL ALPHA-D- REMARK 900 MANNOSIDE AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AVJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL REMARK 900 SPACE GROUP, IN COMPLEX WITH A METHANOL TRIAZOL ETHYL REMARK 900 PHENYL ALPHA-D-MANNOSIDE AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AVK RELATED DB: PDB REMARK 900 STRUCTURE OF TRIGONAL FIMH LECTIN DOMAIN CRYSTAL SOAKED REMARK 900 WITH AN ALPHA-D-MANNOSIDE O-LINKED TO PROPYNYL REMARK 900 PYRIDINE AT 2.4A RESOLUTION DBREF 4AVI A 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 DBREF 4AVI B 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 SEQRES 1 A 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 A 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 A 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 A 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 A 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 A 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 A 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 A 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 A 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 A 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 A 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 A 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 A 158 PRO THR SEQRES 1 B 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 B 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 B 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 B 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 B 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 B 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 B 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 B 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 B 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 B 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 B 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 B 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 B 158 PRO THR HET XNS A 201 24 HET SO4 A1159 5 HET NI A1160 1 HET XNS B 201 24 HET NI B1159 1 HETNAM XNS METHYL ESTER OCTYL ALPHA-1O-D-MANNOPYRANNOSIDE HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION FORMUL 3 XNS 2(C16 H30 O8) FORMUL 4 SO4 O4 S 2- FORMUL 5 NI 2(NI 2+) FORMUL 6 HOH *315(H2 O) HELIX 1 1 TYR A 64 ASN A 70 1 7 HELIX 2 2 TYR B 64 ASN B 70 1 7 SHEET 1 AA 4 ALA A 10 ILE A 11 0 SHEET 2 AA 4 ALA A 2 THR A 5 -1 O CYS A 3 N ILE A 11 SHEET 3 AA 4 ILE A 42 HIS A 45 -1 O PHE A 43 N LYS A 4 SHEET 4 AA 4 LYS A 101 PRO A 102 -1 O LYS A 101 N CYS A 44 SHEET 1 AB 5 GLY A 16 VAL A 22 0 SHEET 2 AB 5 PHE A 142 ALA A 150 1 O GLN A 143 N GLY A 16 SHEET 3 AB 5 LEU A 125 ASN A 135 -1 N ILE A 126 O ILE A 148 SHEET 4 AB 5 ASP A 54 ALA A 63 -1 O TYR A 55 N THR A 134 SHEET 5 AB 5 VAL A 93 TYR A 95 -1 O VAL A 93 N VAL A 56 SHEET 1 AC 4 LEU A 34 ASP A 37 0 SHEET 2 AC 4 VAL A 105 PRO A 111 -1 O LEU A 107 N VAL A 36 SHEET 3 AC 4 PHE A 71 TYR A 77 -1 O SER A 72 N THR A 110 SHEET 4 AC 4 SER A 80 PHE A 84 -1 O SER A 80 N TYR A 77 SHEET 1 AD 2 GLY A 117 ILE A 120 0 SHEET 2 AD 2 VAL A 154 VAL A 156 -1 O VAL A 154 N ALA A 119 SHEET 1 BA 4 ALA B 10 ILE B 11 0 SHEET 2 BA 4 ALA B 2 THR B 5 -1 O CYS B 3 N ILE B 11 SHEET 3 BA 4 ILE B 42 HIS B 45 -1 O PHE B 43 N LYS B 4 SHEET 4 BA 4 LYS B 101 PRO B 102 -1 O LYS B 101 N CYS B 44 SHEET 1 BB 5 GLY B 16 VAL B 22 0 SHEET 2 BB 5 ASP B 141 ALA B 150 1 O GLN B 143 N GLY B 16 SHEET 3 BB 5 LEU B 125 ASN B 135 -1 N ILE B 126 O ILE B 148 SHEET 4 BB 5 ASP B 54 ALA B 63 -1 O TYR B 55 N THR B 134 SHEET 5 BB 5 VAL B 93 TYR B 95 -1 O VAL B 93 N VAL B 56 SHEET 1 BC 4 LEU B 34 ASP B 37 0 SHEET 2 BC 4 VAL B 105 PRO B 111 -1 O LEU B 107 N VAL B 36 SHEET 3 BC 4 PHE B 71 TYR B 77 -1 O SER B 72 N THR B 110 SHEET 4 BC 4 SER B 80 PHE B 84 -1 O SER B 80 N TYR B 77 SHEET 1 BD 2 GLY B 117 ILE B 120 0 SHEET 2 BD 2 VAL B 154 VAL B 156 -1 O VAL B 154 N ALA B 119 SSBOND 1 CYS A 3 CYS A 44 1555 1555 2.06 SSBOND 2 CYS B 3 CYS B 44 1555 1555 2.03 LINK NI NI A1160 OD1 ASP A 47 1555 1555 1.98 LINK NI NI A1160 O HOH A2076 1555 1555 2.05 LINK NI NI A1160 O HOH A2077 1555 1555 2.00 LINK NI NI A1160 O HOH A2079 1555 1555 2.42 LINK NI NI A1160 NE2 HIS A 45 1555 1555 2.02 LINK NI NI A1160 O HOH A2075 1555 1555 2.07 LINK NI NI B1159 O HOH B2058 1555 1555 2.10 LINK NI NI B1159 O HOH B2059 1555 1555 1.89 LINK NI NI B1159 O HOH B2060 1555 1555 2.52 LINK NI NI B1159 O HOH B2137 1555 1555 2.71 LINK NI NI B1159 NE2 HIS B 45 1555 1555 2.12 LINK NI NI B1159 OD1 ASP B 47 1555 1555 1.99 CISPEP 1 PHE A 84 PRO A 85 0 2.68 CISPEP 2 PHE B 84 PRO B 85 0 -4.55 SITE 1 AC1 13 PHE A 1 ASN A 46 ASP A 47 TYR A 48 SITE 2 AC1 13 THR A 51 ILE A 52 ASP A 54 GLN A 133 SITE 3 AC1 13 ASN A 135 TYR A 137 ASP A 140 HOH A2001 SITE 4 AC1 13 HOH A2160 SITE 1 AC2 6 SER A 113 HOH A2173 TYR B 55 ARG B 92 SITE 2 AC2 6 ARG B 132 HOH B2104 SITE 1 AC3 6 HIS A 45 ASP A 47 HOH A2075 HOH A2076 SITE 2 AC3 6 HOH A2077 HOH A2079 SITE 1 AC4 12 PHE B 1 ILE B 13 ASN B 46 ASP B 47 SITE 2 AC4 12 TYR B 48 THR B 51 ASP B 54 GLN B 133 SITE 3 AC4 12 ASN B 135 TYR B 137 ASP B 140 HOH B2001 SITE 1 AC5 6 HIS B 45 ASP B 47 HOH B2058 HOH B2059 SITE 2 AC5 6 HOH B2060 HOH B2137 CRYST1 90.620 90.620 79.700 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011035 0.006371 0.000000 0.00000 SCALE2 0.000000 0.012742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012547 0.00000 MASTER 392 0 5 2 30 0 13 6 0 0 0 26 END