HEADER HYDROLASE/RNA 02-MAR-12 4AL5 TITLE CRYSTAL STRUCTURE OF THE CSY4-CRRNA PRODUCT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSY4 ENDORIBONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*UP*UP*CP*AP*CP*UP*GP*CP*CP*GP*UP*AP*UP*AP COMPND 8 *GP*GP*CP*AP*GP*C)-3'; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CRRNA; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHMGWA; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 14 ORGANISM_TAXID: 287; SOURCE 15 STRAIN: UCBPP-PA14 KEYWDS HYDROLASE-RNA COMPLEX, CRISPR EXPDTA X-RAY DIFFRACTION AUTHOR R.E.HAURWITZ,S.H.STERNBERG,J.A.DOUDNA REVDAT 2 04-JUL-12 4AL5 1 JRNL REVDAT 1 13-JUN-12 4AL5 0 JRNL AUTH R.E.HAURWITZ,S.H.STERNBERG,J.A.DOUDNA JRNL TITL CSY4 RELIES ON AN UNUSUAL CATALYTIC DYAD TO POSITION AND JRNL TITL 2 CLEAVE CRISPR RNA. JRNL REF EMBO J. V. 31 2824 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22522703 JRNL DOI 10.1038/EMBOJ.2012.107 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.508 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.00 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.69 REMARK 3 NUMBER OF REFLECTIONS : 15934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1857 REMARK 3 R VALUE (WORKING SET) : 0.1829 REMARK 3 FREE R VALUE : 0.2382 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 81.5754 - 3.6342 0.99 2584 133 0.1849 0.2015 REMARK 3 2 3.6342 - 2.8845 1.00 2523 134 0.1600 0.2334 REMARK 3 3 2.8845 - 2.5198 1.00 2522 131 0.1813 0.2805 REMARK 3 4 2.5198 - 2.2894 1.00 2508 127 0.1902 0.2759 REMARK 3 5 2.2894 - 2.1253 1.00 2523 132 0.2023 0.2666 REMARK 3 6 2.1253 - 2.0000 1.00 2477 140 0.2088 0.2678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.438 REMARK 3 B_SOL : 52.346 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.28 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.4691 REMARK 3 B22 (A**2) : 0.6628 REMARK 3 B33 (A**2) : -3.1319 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 4.8929 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1891 REMARK 3 ANGLE : 1.328 2649 REMARK 3 CHIRALITY : 0.119 302 REMARK 3 PLANARITY : 0.007 289 REMARK 3 DIHEDRAL : 13.504 744 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID -1:104 OR RESID 139:187) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6812 1.5931 28.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0507 REMARK 3 T33: 0.0967 T12: -0.0136 REMARK 3 T13: -0.0164 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0742 L22: 0.0739 REMARK 3 L33: 0.0766 L12: 0.0263 REMARK 3 L13: -0.0175 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: 0.0753 S13: 0.0202 REMARK 3 S21: -0.0257 S22: 0.0601 S23: 0.0533 REMARK 3 S31: 0.0254 S32: -0.0052 S33: -0.0468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 105:138) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7950 -15.1480 1.4079 REMARK 3 T TENSOR REMARK 3 T11: 0.4768 T22: 0.3563 REMARK 3 T33: 0.2249 T12: 0.0163 REMARK 3 T13: 0.0970 T23: -0.1053 REMARK 3 L TENSOR REMARK 3 L11: 0.0136 L22: 0.0030 REMARK 3 L33: 0.0001 L12: 0.0057 REMARK 3 L13: -0.0012 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0035 S13: -0.0257 REMARK 3 S21: -0.0031 S22: -0.0163 S23: -0.0184 REMARK 3 S31: 0.0095 S32: -0.0146 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 17.9045 -5.6665 6.5232 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.4569 REMARK 3 T33: 0.1300 T12: -0.0833 REMARK 3 T13: 0.1397 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.0339 L22: 0.0190 REMARK 3 L33: 0.0342 L12: -0.0093 REMARK 3 L13: -0.0192 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0350 S13: 0.0052 REMARK 3 S21: -0.0910 S22: -0.0138 S23: -0.0110 REMARK 3 S31: 0.0398 S32: 0.0193 S33: 0.0285 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 4 REMARK 4 4AL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-12. REMARK 100 THE PDBE ID CODE IS EBI-51512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11588 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 81.51 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.5 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.58 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.2 REMARK 200 R MERGE FOR SHELL (I) : 0.81 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.06 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XLK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22 % PEG4000, 120 MM SODIUM CITRATE PH REMARK 280 5.0, 50 MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.39500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.39500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2072 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2074 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2099 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 22 TO CYS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A -1 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 0 OG1 CG2 REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 51 CD NE CZ NH1 NH2 REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 LYS A 106 CD CE NZ REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 122 CD1 CD2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CE NZ REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 C B 4 O5' C5' C4' O4' C3' C2' O2' C1' REMARK 470 C B 4 N1 C2 O2 N3 C4 N4 C5 C6 REMARK 470 C B 21 C5' C4' O4' C3' C2' O2' C1' N1 REMARK 470 C B 21 C2 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 64 O HOH A 2003 1.59 REMARK 500 O ASP A 65 O HOH A 2058 1.50 REMARK 500 H ASP A 65 O HOH A 2056 1.41 REMARK 500 OD2 ASP A 66 O HOH A 2038 2.03 REMARK 500 O LYS A 129 O HOH A 2099 1.99 REMARK 500 N6 A B 15 O HOH B 2004 2.14 REMARK 500 H61 A B 15 O HOH B 2004 1.22 REMARK 500 OP1 G B 17 O HOH B 2006 2.14 REMARK 500 O HOH A 2008 O HOH A 2021 1.99 REMARK 500 O HOH A 2014 O HOH A 2067 1.92 REMARK 500 O HOH A 2022 O HOH A 2049 2.08 REMARK 500 O HOH A 2049 O HOH A 2052 2.17 REMARK 500 O HOH A 2049 O HOH A 2050 1.66 REMARK 500 O HOH A 2079 O HOH A 2107 2.15 REMARK 500 O HOH B 2002 O HOH A 2094 2.19 REMARK 500 O HOH B 2009 O HOH A 2114 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 129 O HOH A 2099 2655 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 11 C8 G B 11 N7 -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 11 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 75.24 -105.88 REMARK 500 ASP A 38 30.51 -144.72 REMARK 500 LEU A 47 133.53 -38.23 REMARK 500 ALA A 62 -173.54 -176.35 REMARK 500 LYS A 106 74.60 -68.89 REMARK 500 HIS A 120 19.76 -141.90 REMARK 500 ASP A 121 26.03 47.70 REMARK 500 ASP A 140 62.95 -102.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1022 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AL6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE S148ACSY4-CRRNA COMPLEX REMARK 900 RELATED ID: 4AL7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CSY4-MINIMAL CRRNA COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DATABASE ENTRY IS MISSING THE N-TERMINAL 20 AMINO REMARK 999 ACIDS BECAUSE THE START CODON IS INCORRECTLY ANNOTATED. ( REMARK 999 THEREFORE THE DATABASE ENTRY IS ONLY 167 AMINO ACIDS IN REMARK 999 LENGTH.) REMARK 999 CRRNA REPEAT SEQUENCE DERIVED FROM CRISPR LOCUS LOCATED REMARK 999 2926520-2927393 DBREF 4AL5 A 21 187 UNP Q02MM2 Q02MM2_PSEAB 1 167 DBREF 4AL5 B 2 21 PDB 4AL5 4AL5 2 21 SEQADV 4AL5 GLY A -3 UNP Q02MM2 EXPRESSION TAG SEQADV 4AL5 SER A -2 UNP Q02MM2 EXPRESSION TAG SEQADV 4AL5 PHE A -1 UNP Q02MM2 EXPRESSION TAG SEQADV 4AL5 THR A 0 UNP Q02MM2 EXPRESSION TAG SEQADV 4AL5 MET A 1 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ASP A 2 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 HIS A 3 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 TYR A 4 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 LEU A 5 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ASP A 6 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ILE A 7 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ARG A 8 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 LEU A 9 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ARG A 10 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 PRO A 11 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ASP A 12 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 PRO A 13 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 GLU A 14 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 PHE A 15 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 PRO A 16 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 PRO A 17 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 ALA A 18 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 GLN A 19 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 LEU A 20 UNP Q02MM2 SEE REMARK 999 SEQADV 4AL5 CYS A 22 UNP Q02MM2 SER 22 ENGINEERED MUTATION SEQRES 1 A 191 GLY SER PHE THR MET ASP HIS TYR LEU ASP ILE ARG LEU SEQRES 2 A 191 ARG PRO ASP PRO GLU PHE PRO PRO ALA GLN LEU MET CYS SEQRES 3 A 191 VAL LEU PHE GLY LYS LEU HIS GLN ALA LEU VAL ALA GLN SEQRES 4 A 191 GLY GLY ASP ARG ILE GLY VAL SER PHE PRO ASP LEU ASP SEQRES 5 A 191 GLU SER ARG SER ARG LEU GLY GLU ARG LEU ARG ILE HIS SEQRES 6 A 191 ALA SER ALA ASP ASP LEU ARG ALA LEU LEU ALA ARG PRO SEQRES 7 A 191 TRP LEU GLU GLY LEU ARG ASP HIS LEU GLN PHE GLY GLU SEQRES 8 A 191 PRO ALA VAL VAL PRO HIS PRO THR PRO TYR ARG GLN VAL SEQRES 9 A 191 SER ARG VAL GLN ALA LYS SER ASN PRO GLU ARG LEU ARG SEQRES 10 A 191 ARG ARG LEU MET ARG ARG HIS ASP LEU SER GLU GLU GLU SEQRES 11 A 191 ALA ARG LYS ARG ILE PRO ASP THR VAL ALA ARG ALA LEU SEQRES 12 A 191 ASP LEU PRO PHE VAL THR LEU ARG SER GLN SER THR GLY SEQRES 13 A 191 GLN HIS PHE ARG LEU PHE ILE ARG HIS GLY PRO LEU GLN SEQRES 14 A 191 VAL THR ALA GLU GLU GLY GLY PHE THR CYS TYR GLY LEU SEQRES 15 A 191 SER LYS GLY GLY PHE VAL PRO TRP PHE SEQRES 1 B 20 U U C A C U G C C G U A U SEQRES 2 B 20 A G G C A G C HET GOL B1022 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 3 HOH *128(H2 O) HELIX 1 1 PRO A 16 GLY A 36 1 21 HELIX 2 2 SER A 63 ARG A 73 1 11 HELIX 3 3 PRO A 74 GLU A 77 5 4 HELIX 4 4 LEU A 79 ASP A 81 5 3 HELIX 5 5 ASN A 108 ASP A 121 1 14 HELIX 6 6 SER A 123 ILE A 131 1 9 HELIX 7 7 PRO A 132 ALA A 136 5 5 SHEET 1 AA 4 GLY A 41 SER A 43 0 SHEET 2 AA 4 ARG A 57 ALA A 62 -1 O ARG A 59 N SER A 43 SHEET 3 AA 4 HIS A 3 LEU A 9 -1 O HIS A 3 N ALA A 62 SHEET 4 AA 4 LEU A 83 PHE A 85 -1 O GLN A 84 N ARG A 8 SHEET 1 AB 4 GLY A 41 SER A 43 0 SHEET 2 AB 4 ARG A 57 ALA A 62 -1 O ARG A 59 N SER A 43 SHEET 3 AB 4 HIS A 3 LEU A 9 -1 O HIS A 3 N ALA A 62 SHEET 4 AB 4 ALA A 89 VAL A 90 -1 O ALA A 89 N TYR A 4 SHEET 1 AC 2 LEU A 83 PHE A 85 0 SHEET 2 AC 2 HIS A 3 LEU A 9 -1 O ARG A 8 N GLN A 84 SHEET 1 AD 2 TYR A 97 ARG A 98 0 SHEET 2 AD 2 VAL A 184 PRO A 185 -1 O VAL A 184 N ARG A 98 SHEET 1 AE 3 VAL A 100 VAL A 103 0 SHEET 2 AE 3 HIS A 154 HIS A 161 -1 O PHE A 158 N VAL A 103 SHEET 3 AE 3 PHE A 143 ARG A 147 -1 O VAL A 144 N LEU A 157 CISPEP 1 HIS A 93 PRO A 94 0 4.34 SITE 1 AC1 4 THR A 151 HOH A2098 A B 19 G B 20 CRYST1 60.790 47.800 86.570 90.00 109.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016450 0.000000 0.005887 0.00000 SCALE2 0.000000 0.020921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012269 0.00000 MASTER 415 0 1 7 15 0 1 6 0 0 0 17 END