HEADER TRANSCRIPTION 14-NOV-11 4A7J TITLE SYMMETRIC DIMETHYLATION OF H3 ARGININE 2 IS A NOVEL HISTONE MARK TITLE 2 THAT SUPPORTS EUCHROMATIN MAINTENANCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-334; COMPND 5 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.1T; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: HISTONE TAIL, RESIDUES 1-16; COMPND 11 SYNONYM: H3/T, H3T, H3/G; COMPND 12 OTHER_DETAILS: SYMMETRICALLY DIMETHYLATED ARGININE 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, HISTONE METHYLATION EXPDTA X-RAY DIFFRACTION AUTHOR V.MIGLIORI,J.MULLER,S.PHALKE,D.LOW,M.BEZZI,W.CHUENMOK,J.GUNARATNE, AUTHOR 2 P.CAPASSO,C.BASSI,V.CECATIELLO,A.DEMARCO,W.BLACKSTOCK,V.KUZNETSOV, AUTHOR 3 B.AMATI,M.MAPELLI,E.GUCCIONE REVDAT 2 15-FEB-12 4A7J 1 JRNL REVDAT 1 11-JAN-12 4A7J 0 JRNL AUTH V.MIGLIORI,J.MULLER,S.PHALKE,D.LOW,M.BEZZI,W.CHUENMOK, JRNL AUTH 2 S.K.SAHU,J.GUNARATNE,P.CAPASSO,C.BASSI,V.CECATIELLO, JRNL AUTH 3 A.DEMARCO,W.BLACKSTOCK,V.KUZNETSOV,B.AMATI,M.MAPELLI, JRNL AUTH 4 E.GUCCIONE JRNL TITL SYMMETRIC DIMETHYLATION OF H3R2 IS A NEWLY IDENTIFIED JRNL TITL 2 HISTONE MARK THAT SUPPORTS EUCHROMATIN MAINTENANCE JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 136 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22231400 JRNL DOI 10.1038/NSMB.2209 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1249102.87 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.000000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 22754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.9 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3373 REMARK 3 BIN R VALUE (WORKING SET) : 0.202 REMARK 3 BIN FREE R VALUE : 0.257 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.94 REMARK 3 B22 (A**2) : 0.95 REMARK 3 B33 (A**2) : -2.89 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 1.33 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.8 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.6 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.08 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 35.054 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : 2MR_080229.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : 2MR_080229.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4A7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-11. REMARK 100 THE PDBE ID CODE IS EBI-50225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.6 REMARK 200 R MERGE (I) : 0.01 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.6 REMARK 200 R MERGE FOR SHELL (I) : 0.03 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2H13 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5; 60 MM REMARK 280 AMMONIUM SULPHATE; 30% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 MET B 0 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 LYS B 14 REMARK 465 ALA B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 7 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ALA A 65 O HOH A 2041 1.74 REMARK 500 C ALA A 65 O HOH A 2042 2.02 REMARK 500 O ALA A 65 O HOH A 2042 1.08 REMARK 500 CB ALA A 65 O HOH A 2041 0.48 REMARK 500 C GLY A 127 O HOH A 2110 1.84 REMARK 500 O GLY A 127 O HOH A 2110 0.56 REMARK 500 CE LYS A 331 O HOH A 2053 1.94 REMARK 500 NZ LYS A 331 O HOH A 2053 0.47 REMARK 500 O HOH A 2008 O HOH A 2010 0.27 REMARK 500 O HOH A 2020 O HOH A 2022 0.10 REMARK 500 O HOH A 2048 O HOH A 2049 0.01 REMARK 500 O HOH A 2056 O HOH A 2057 0.25 REMARK 500 O HOH A 2112 O HOH A 2113 0.31 REMARK 500 O HOH A 2123 O HOH A 2126 0.27 REMARK 500 O HOH A 2125 O HOH A 2127 0.45 REMARK 500 O HOH A 2140 O HOH A 2141 0.26 REMARK 500 O HOH A 2164 O HOH A 2166 0.09 REMARK 500 O HOH A 2165 O HOH A 2167 0.00 REMARK 500 O HOH A 2226 O HOH A 2227 0.32 REMARK 500 O HOH A 2238 O HOH A 2239 0.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2021 O HOH A 2129 2556 0.33 REMARK 500 O HOH A 2032 O HOH A 2155 2555 0.36 REMARK 500 O HOH A 2037 O HOH A 2154 2555 0.25 REMARK 500 O HOH A 2055 O HOH A 2078 2555 0.13 REMARK 500 O HOH A 2118 O HOH A 2237 2545 0.31 REMARK 500 O HOH A 2119 O HOH A 2225 2545 0.29 REMARK 500 O HOH A 2124 O HOH A 2231 2546 0.63 REMARK 500 O HOH A 2133 O HOH A 2228 2545 0.47 REMARK 500 O HOH B 2003 O HOH A 2138 2556 0.25 REMARK 500 O HOH B 2004 O HOH A 2128 2556 0.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 65 CA ALA A 65 CB 0.452 REMARK 500 ALA A 65 N ALA A 65 CA -0.120 REMARK 500 GLY A 77 CA GLY A 77 C 0.147 REMARK 500 LYS A 78 N LYS A 78 CA 0.130 REMARK 500 GLY A 127 C GLY A 127 O 0.166 REMARK 500 LYS A 331 CE LYS A 331 NZ 0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 65 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 GLY A 77 O - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 GLY A 127 CA - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 58.94 -141.91 REMARK 500 LEU A 234 47.66 -77.78 REMARK 500 LYS A 325 14.84 59.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 322 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H13 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WDR5/HISTONE H3 COMPLEX REMARK 900 RELATED ID: 2H6Q RELATED DB: PDB REMARK 900 HISTONE H3 RECOGNITION AND PRESENTATION BY THE WDR5 REMARK 900 MODULEOF THE MLL1 COMPLEX REMARK 900 RELATED ID: 2G99 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THE SPECIFIC RECOGNITION OF REMARK 900 METHYLATEDHISTONE H3 LYSINE 4 BY THE WD-40 PROTEIN REMARK 900 WDR5 REMARK 900 RELATED ID: 2CO0 RELATED DB: PDB REMARK 900 WDR5 AND UNMODIFIED HISTONE H3 COMPLEX AT 2.25 REMARK 900 ANGSTROM REMARK 900 RELATED ID: 2H6K RELATED DB: PDB REMARK 900 HISTONE H3 RECOGNITION AND PRESENTATION BY THE WDR5 REMARK 900 MODULEOF THE MLL1 COMPLEX REMARK 900 RELATED ID: 2CNX RELATED DB: PDB REMARK 900 WDR5 AND HISTONE H3 LYSINE 4 DIMETHYL COMPLEX AT 2. REMARK 900 1 ANGSTROM REMARK 900 RELATED ID: 2YBP RELATED DB: PDB REMARK 900 JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE REMARK 900 H3K36ME3 PEPTIDE (30-41) REMARK 900 RELATED ID: 2YBS RELATED DB: PDB REMARK 900 JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE REMARK 900 H3K36ME3 PEPTIDE (30-41) REMARK 900 RELATED ID: 2G9A RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THE SPECIFIC RECOGNITION OF REMARK 900 METHYLATEDHISTONE H3 LYSINE 4 BY THE WD-40 PROTEIN REMARK 900 WDR5 REMARK 900 RELATED ID: 2V1D RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF LSD1-COREST SELECTIVITY IN HISTONE REMARK 900 H3 RECOGNITION REMARK 900 RELATED ID: 2H6N RELATED DB: PDB REMARK 900 HISTONE H3 RECOGNITION AND PRESENTATION BY THE WDR5 REMARK 900 MODULEOF THE MLL1 COMPLEX REMARK 900 RELATED ID: 2GNQ RELATED DB: PDB REMARK 900 STRUCTURE OF WDR5 REMARK 900 RELATED ID: 2H68 RELATED DB: PDB REMARK 900 HISTONE H3 RECOGNITION AND PRESENTATION BY THE WDR5 REMARK 900 MODULEOF THE MLL1 COMPLEX REMARK 900 RELATED ID: 2H14 RELATED DB: PDB REMARK 900 CRYSTAL OF WDR5 (APO-FORM) DBREF 4A7J A 21 334 UNP P61964 WDR5_HUMAN 21 334 DBREF 4A7J B 0 15 UNP Q16695 H31T_HUMAN 1 16 SEQADV 4A7J GLY A 17 UNP P61964 EXPRESSION TAG SEQADV 4A7J PRO A 18 UNP P61964 EXPRESSION TAG SEQADV 4A7J LEU A 19 UNP P61964 EXPRESSION TAG SEQADV 4A7J GLY A 20 UNP P61964 EXPRESSION TAG SEQRES 1 A 318 GLY PRO LEU GLY SER SER ALA THR GLN SER LYS PRO THR SEQRES 2 A 318 PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE THR LEU ALA SEQRES 3 A 318 GLY HIS THR LYS ALA VAL SER SER VAL LYS PHE SER PRO SEQRES 4 A 318 ASN GLY GLU TRP LEU ALA SER SER SER ALA ASP LYS LEU SEQRES 5 A 318 ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS SEQRES 6 A 318 THR ILE SER GLY HIS LYS LEU GLY ILE SER ASP VAL ALA SEQRES 7 A 318 TRP SER SER ASP SER ASN LEU LEU VAL SER ALA SER ASP SEQRES 8 A 318 ASP LYS THR LEU LYS ILE TRP ASP VAL SER SER GLY LYS SEQRES 9 A 318 CYS LEU LYS THR LEU LYS GLY HIS SER ASN TYR VAL PHE SEQRES 10 A 318 CYS CYS ASN PHE ASN PRO GLN SER ASN LEU ILE VAL SER SEQRES 11 A 318 GLY SER PHE ASP GLU SER VAL ARG ILE TRP ASP VAL LYS SEQRES 12 A 318 THR GLY LYS CYS LEU LYS THR LEU PRO ALA HIS SER ASP SEQRES 13 A 318 PRO VAL SER ALA VAL HIS PHE ASN ARG ASP GLY SER LEU SEQRES 14 A 318 ILE VAL SER SER SER TYR ASP GLY LEU CYS ARG ILE TRP SEQRES 15 A 318 ASP THR ALA SER GLY GLN CYS LEU LYS THR LEU ILE ASP SEQRES 16 A 318 ASP ASP ASN PRO PRO VAL SER PHE VAL LYS PHE SER PRO SEQRES 17 A 318 ASN GLY LYS TYR ILE LEU ALA ALA THR LEU ASP ASN THR SEQRES 18 A 318 LEU LYS LEU TRP ASP TYR SER LYS GLY LYS CYS LEU LYS SEQRES 19 A 318 THR TYR THR GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE SEQRES 20 A 318 ALA ASN PHE SER VAL THR GLY GLY LYS TRP ILE VAL SER SEQRES 21 A 318 GLY SER GLU ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN SEQRES 22 A 318 THR LYS GLU ILE VAL GLN LYS LEU GLN GLY HIS THR ASP SEQRES 23 A 318 VAL VAL ILE SER THR ALA CYS HIS PRO THR GLU ASN ILE SEQRES 24 A 318 ILE ALA SER ALA ALA LEU GLU ASN ASP LYS THR ILE LYS SEQRES 25 A 318 LEU TRP LYS SER ASP CYS SEQRES 1 B 16 MET ALA 2MR THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 B 16 GLY LYS ALA MODRES 4A7J 2MR B 2 ARG N3, N4-DIMETHYLARGININE HET 2MR B 2 13 HETNAM 2MR N3, N4-DIMETHYLARGININE FORMUL 3 2MR C8 H18 N4 O2 FORMUL 4 HOH *244(H2 O) SHEET 1 AA 4 ALA A 36 LEU A 41 0 SHEET 2 AA 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA 4 ILE A 315 ALA A 320 -1 O ILE A 316 N TRP A 330 SHEET 4 AA 4 VAL A 304 CYS A 309 -1 N ILE A 305 O ALA A 319 SHEET 1 AB 4 VAL A 48 PHE A 53 0 SHEET 2 AB 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AB 4 LEU A 68 GLY A 73 -1 O LEU A 68 N SER A 64 SHEET 4 AB 4 PHE A 79 SER A 84 -1 N GLU A 80 O ILE A 71 SHEET 1 AC 4 ILE A 90 TRP A 95 0 SHEET 2 AC 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94 SHEET 3 AC 4 THR A 110 ASP A 115 -1 O THR A 110 N SER A 106 SHEET 4 AC 4 CYS A 121 LYS A 126 -1 N LEU A 122 O ILE A 113 SHEET 1 AD 4 VAL A 132 PHE A 137 0 SHEET 2 AD 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AD 4 VAL A 153 ASP A 157 -1 O ARG A 154 N SER A 146 SHEET 4 AD 4 CYS A 163 LEU A 167 -1 N LEU A 164 O ILE A 155 SHEET 1 AE 4 VAL A 174 PHE A 179 0 SHEET 2 AE 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AE 4 CYS A 195 ASP A 199 -1 O ARG A 196 N SER A 188 SHEET 4 AE 4 CYS A 205 LEU A 209 -1 N LEU A 206 O ILE A 197 SHEET 1 AF 4 VAL A 217 PHE A 222 0 SHEET 2 AF 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AF 4 THR A 237 ASP A 242 -1 O THR A 237 N THR A 233 SHEET 4 AF 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AG 4 ALA A 264 SER A 267 0 SHEET 2 AG 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AG 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AG 4 ILE A 293 LEU A 297 -1 N VAL A 294 O ILE A 285 LINK N 2MR B 2 C ALA B 1 1555 1555 1.33 LINK C 2MR B 2 N THR B 3 1555 1555 1.33 CRYST1 52.600 46.800 65.000 90.00 104.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019011 0.000000 0.004857 0.00000 SCALE2 0.000000 0.021368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015879 0.00000 MASTER 430 0 1 0 28 0 0 6 0 0 0 27 END