HEADER RNA BINDING PROTEIN 12-OCT-11 4A4E TITLE SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH TITLE 2 SYMMETRICALLY DIMETHYLATED ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURVIVAL MOTOR NEURON PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN, RESIDUES 84-147; COMPND 5 SYNONYM: SURVIVAL MOTOR NEURON PROTEIN SMN, COMPONENT OF GEMS 1, COMPND 6 GEMIN-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TRIPSIANES,T.MADL,M.MACHYNA,D.FESSAS,C.ENGLBRECHT,U.FISCHER, AUTHOR 2 K.M.NEUGEBAUER,M.SATTLER REVDAT 3 28-DEC-11 4A4E 1 ATOM REVDAT 2 14-DEC-11 4A4E 1 JRNL REVDAT 1 30-NOV-11 4A4E 0 JRNL AUTH K.TRIPSIANES,T.MADL,M.MACHYNA,D.FESSAS,C.ENGLBRECHT, JRNL AUTH 2 U.FISCHER,K.M.NEUGEBAUER,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR DIMETHYL-ARGININE RECOGNITION BY THE JRNL TITL 2 TUDOR DOMAINS OF HUMAN SMN AND SPF30 PROTEINS JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1414 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22101937 JRNL DOI 10.1038/NSMB.2185 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, REMARK 3 : RICE,SIMONSON,WARREN REMARK 4 REMARK 4 4A4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-11. REMARK 100 THE PDBE ID CODE IS EBI-49970. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 298.0; REMARK 210 298.0; 298.0; 298.0 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5; 6.5; REMARK 210 6.5 REMARK 210 IONIC STRENGTH : 50MM; 50MM; 50MM; 50MM; REMARK 210 50MM; 50MM REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM; REMARK 210 1.0 ATM; 1.0 ATM; 1.0 ATM; REMARK 210 SAMPLE CONTENTS : 93% WATER/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED 3D NOESY ; F1 REMARK 210 15N/13C FILTERED, 15N- REMARK 210 EDITED 3D NOESY ; 13C- REMARK 210 EDITED 3D NOESY ( REMARK 210 ALIPHATICS) ; F1 15N/13C REMARK 210 FILTERED, 13C-EDITED 3D REMARK 210 NOESY (ALIPHATICS) ; 13C- REMARK 210 EDITED 3D NOESY (AROMATICS) REMARK 210 ; F1 15N/13C FILTERED, REMARK 210 13C-EDITED 3D NOESY ( REMARK 210 AROMATICS) REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, CYANA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ALA A 86 -35.92 74.60 REMARK 500 2 ALA A 87 109.91 -53.56 REMARK 500 3 ALA A 86 103.08 -169.44 REMARK 500 3 ALA A 87 109.92 76.60 REMARK 500 7 CYS A 146 43.70 -82.38 REMARK 500 8 ALA A 87 96.22 68.94 REMARK 500 9 THR A 85 -167.52 56.01 REMARK 500 9 SER A 88 19.50 -164.11 REMARK 500 9 GLN A 90 -0.43 -141.88 REMARK 500 9 CYS A 146 98.68 -162.84 REMARK 500 10 ALA A 87 81.67 67.74 REMARK 500 11 CYS A 98 -168.60 -162.77 REMARK 500 15 CYS A 146 24.95 -140.80 REMARK 500 16 SER A 88 90.47 -69.57 REMARK 500 17 ALA A 86 -55.75 -160.47 REMARK 500 18 ALA A 86 -83.11 -177.99 REMARK 500 18 ALA A 87 -82.39 47.64 REMARK 500 18 CYS A 146 -1.77 74.81 REMARK 500 19 ALA A 86 -49.61 73.81 REMARK 500 19 SER A 88 19.33 -152.44 REMARK 500 19 LEU A 89 58.01 -91.18 REMARK 500 19 GLN A 90 11.91 -154.39 REMARK 500 20 ALA A 86 -8.20 72.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2MR A1148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G5V RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF THE HUMAN REMARK 900 SMNPROTEIN REMARK 900 RELATED ID: 1MHN RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE SMN TUDOR REMARK 900 DOMAIN REMARK 900 RELATED ID: 4A4G RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH REMARK 900 ASYMMETRICALLY DIMETHYLATED ARGININE REMARK 900 RELATED ID: 4A4F RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SPF30 TUDOR DOMAIN IN COMPLEX REMARK 900 WITH SYMMETRICALLY DIMETHYLATED ARGININE REMARK 900 RELATED ID: 4A4H RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SPF30 TUDOR DOMAIN IN COMPLEX REMARK 900 WITH ASYMMETRICALLY DIMETHYLATED ARGININE DBREF 4A4E A 84 147 UNP Q16637 SMN_HUMAN 84 147 SEQRES 1 A 64 ASN THR ALA ALA SER LEU GLN GLN TRP LYS VAL GLY ASP SEQRES 2 A 64 LYS CYS SER ALA ILE TRP SER GLU ASP GLY CYS ILE TYR SEQRES 3 A 64 PRO ALA THR ILE ALA SER ILE ASP PHE LYS ARG GLU THR SEQRES 4 A 64 CYS VAL VAL VAL TYR THR GLY TYR GLY ASN ARG GLU GLU SEQRES 5 A 64 GLN ASN LEU SER ASP LEU LEU SER PRO ILE CYS GLU HET 2MR A1148 33 HETNAM 2MR N3, N4-DIMETHYLARGININE FORMUL 2 2MR C8 H18 N4 O2 HELIX 1 1 SER A 139 LEU A 141 5 3 SHEET 1 AA 4 LYS A 97 ILE A 101 0 SHEET 2 AA 4 ILE A 108 ASP A 117 -1 O TYR A 109 N ALA A 100 SHEET 3 AA 4 THR A 122 TYR A 127 -1 O THR A 122 N ASP A 117 SHEET 4 AA 4 ARG A 133 ASN A 137 -1 O GLU A 134 N VAL A 125 SITE 1 AC1 6 TRP A 102 ASP A 105 TYR A 109 TYR A 127 SITE 2 AC1 6 TYR A 130 ASN A 132 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 120 0 1 1 4 0 2 6 0 0 0 5 END