HEADER PROTEIN BINDING 21-SEP-11 4A20 TITLE CRYSTAL STRUCTURE OF THE UBL DOMAIN OF MDY2 (GET5) AT 1.78A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN MDY2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GET5 UBL-LIKE DOMAIN, RESIDUES 70-152; COMPND 5 SYNONYM: GOLGI TO ER TRAFFIC PROTEIN 5, MATING-DEFICIENT PROTEIN 2, COMPND 6 TRANSLATION MACHINERY-ASSOCIATED PROTEIN 24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET46 KEYWDS PROTEIN BINDING, GET-PATHWAY, TAIL-ANCHORED PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR A.C.SIMON,P.J.SIMPSON,J.W.MURRAY,R.L.ISAACSON REVDAT 5 08-MAY-19 4A20 1 REMARK REVDAT 4 13-FEB-13 4A20 1 JRNL REVDAT 3 30-JAN-13 4A20 1 JRNL REVDAT 2 16-JAN-13 4A20 1 JRNL REVDAT 1 14-NOV-12 4A20 0 JRNL AUTH A.C.SIMON,P.J.SIMPSON,R.M.GOLDSTONE,E.M.KRYSZTOFINSKA, JRNL AUTH 2 J.W.MURRAY,S.HIGH,R.L.ISAACSON JRNL TITL STRUCTURE OF THE SGT2/GET5 COMPLEX PROVIDES INSIGHTS INTO JRNL TITL 2 GET-MEDIATED TARGETING OF TAIL-ANCHORED MEMBRANE PROTEINS JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 1327 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23297211 JRNL DOI 10.1073/PNAS.1207518110 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.391 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 651 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 423 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 885 ; 1.987 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1063 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 81 ; 5.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ;39.851 ;26.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 124 ;14.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 109 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 675 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 101 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 98 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 407 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 300 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 341 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 29 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.023 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 16 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.720 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 405 ; 1.249 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 157 ; 0.383 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 665 ; 2.054 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 246 ; 3.576 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 219 ; 5.358 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8991 -1.4217 -0.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.1065 REMARK 3 T33: 0.1912 T12: 0.0663 REMARK 3 T13: 0.0584 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 15.3021 L22: 4.9040 REMARK 3 L33: 10.4615 L12: 5.3314 REMARK 3 L13: -6.9863 L23: -4.5577 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.0267 S13: -0.0834 REMARK 3 S21: -0.1582 S22: 0.0712 S23: -0.3267 REMARK 3 S31: 0.2810 S32: 0.1518 S33: -0.0672 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0273 -6.6762 5.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.1851 REMARK 3 T33: 0.1287 T12: -0.0383 REMARK 3 T13: -0.0036 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 8.1211 L22: 4.0024 REMARK 3 L33: 2.0986 L12: 2.1040 REMARK 3 L13: -1.6697 L23: -1.5665 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: -0.1410 S13: -0.2845 REMARK 3 S21: -0.3868 S22: -0.0466 S23: -0.0497 REMARK 3 S31: 0.1005 S32: -0.4135 S33: -0.0375 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8711 2.3641 -2.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1570 REMARK 3 T33: 0.0884 T12: -0.0106 REMARK 3 T13: 0.0121 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 4.0014 L22: 3.1453 REMARK 3 L33: 3.7050 L12: 0.7540 REMARK 3 L13: -0.8636 L23: -0.7659 REMARK 3 S TENSOR REMARK 3 S11: -0.2105 S12: 0.3451 S13: 0.1798 REMARK 3 S21: -0.5527 S22: 0.1883 S23: 0.0273 REMARK 3 S31: 0.3119 S32: -0.5781 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1586 8.9827 5.4304 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1682 REMARK 3 T33: 0.1904 T12: 0.0691 REMARK 3 T13: 0.0041 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 3.0547 L22: 5.3782 REMARK 3 L33: 0.7450 L12: 1.3277 REMARK 3 L13: -0.9750 L23: -1.8502 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: -0.1723 S13: -0.0086 REMARK 3 S21: 0.2307 S22: -0.2090 S23: -0.4083 REMARK 3 S31: -0.1183 S32: 0.0603 S33: 0.1193 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4154 0.3444 6.9271 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1048 REMARK 3 T33: 0.1080 T12: 0.0065 REMARK 3 T13: 0.0201 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 15.7371 L22: 1.0981 REMARK 3 L33: 2.6077 L12: -0.4354 REMARK 3 L13: 1.4501 L23: 1.3783 REMARK 3 S TENSOR REMARK 3 S11: 0.0634 S12: -0.3657 S13: 0.2444 REMARK 3 S21: -0.0842 S22: 0.0170 S23: -0.0117 REMARK 3 S31: -0.1218 S32: -0.1368 S33: -0.0805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 40.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.720 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M62 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M AMMONIUM SULFATE, 100 MM SODIUM REMARK 280 CITRATE PH 5.5 MIXED WITH AN EQUAL VOLUME OF PROTEIN AT 6MG/ML, REMARK 280 HANGING DROP VAPOUR DIFFUSION., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.27333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.13667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.13667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.27333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.13667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 55 REMARK 465 ALA A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 VAL A 63 REMARK 465 ASP A 64 REMARK 465 ASP A 65 REMARK 465 ASP A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 68 REMARK 465 MET A 69 REMARK 465 ASP A 70 REMARK 465 ASN A 71 REMARK 465 PRO A 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 122 CD CE NZ REMARK 470 LYS A 149 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2031 O HOH A 2031 5555 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 110.23 -165.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WPV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S. CEREVISIAE GET4-GET5 COMPLEX DBREF 4A20 A 70 152 UNP Q12285 MDY2_YEAST 70 152 SEQADV 4A20 MET A 55 UNP Q12285 EXPRESSION TAG SEQADV 4A20 ALA A 56 UNP Q12285 EXPRESSION TAG SEQADV 4A20 HIS A 57 UNP Q12285 EXPRESSION TAG SEQADV 4A20 HIS A 58 UNP Q12285 EXPRESSION TAG SEQADV 4A20 HIS A 59 UNP Q12285 EXPRESSION TAG SEQADV 4A20 HIS A 60 UNP Q12285 EXPRESSION TAG SEQADV 4A20 HIS A 61 UNP Q12285 EXPRESSION TAG SEQADV 4A20 HIS A 62 UNP Q12285 EXPRESSION TAG SEQADV 4A20 VAL A 63 UNP Q12285 EXPRESSION TAG SEQADV 4A20 ASP A 64 UNP Q12285 EXPRESSION TAG SEQADV 4A20 ASP A 65 UNP Q12285 EXPRESSION TAG SEQADV 4A20 ASP A 66 UNP Q12285 EXPRESSION TAG SEQADV 4A20 ASP A 67 UNP Q12285 EXPRESSION TAG SEQADV 4A20 LYS A 68 UNP Q12285 EXPRESSION TAG SEQADV 4A20 MET A 69 UNP Q12285 EXPRESSION TAG SEQRES 1 A 98 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 98 LYS MET ASP ASN ALA ALA VAL HIS LEU THR LEU LYS LYS SEQRES 3 A 98 ILE GLN ALA PRO LYS PHE SER ILE GLU HIS ASP PHE SER SEQRES 4 A 98 PRO SER ASP THR ILE LEU GLN ILE LYS GLN HIS LEU ILE SEQRES 5 A 98 SER GLU GLU LYS ALA SER HIS ILE SER GLU ILE LYS LEU SEQRES 6 A 98 LEU LEU LYS GLY LYS VAL LEU HIS ASP ASN LEU PHE LEU SEQRES 7 A 98 SER ASP LEU LYS VAL THR PRO ALA ASN SER THR ILE THR SEQRES 8 A 98 VAL MET ILE LYS PRO ASN PRO HET SO4 A1152 5 HET SO4 A1153 5 HET SO4 A1154 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *46(H2 O) HELIX 1 1 THR A 97 GLU A 108 1 12 HELIX 2 2 HIS A 113 SER A 115 5 3 HELIX 3 3 LEU A 132 LEU A 135 5 4 SHEET 1 AA 5 PHE A 86 PHE A 92 0 SHEET 2 AA 5 VAL A 74 LYS A 80 -1 O VAL A 74 N PHE A 92 SHEET 3 AA 5 THR A 143 ILE A 148 1 O ILE A 144 N LYS A 79 SHEET 4 AA 5 ILE A 117 LEU A 121 -1 O LYS A 118 N MET A 147 SHEET 5 AA 5 LYS A 124 LEU A 126 -1 O LYS A 124 N LEU A 121 CISPEP 1 ALA A 83 PRO A 84 0 3.03 SITE 1 AC1 3 HIS A 127 ASP A 128 HOH A2025 SITE 1 AC2 2 GLN A 82 ALA A 83 SITE 1 AC3 4 LYS A 124 VAL A 125 HOH A2033 HOH A2037 CRYST1 47.190 47.190 78.410 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021191 0.012235 0.000000 0.00000 SCALE2 0.000000 0.024469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012753 0.00000 MASTER 447 0 3 3 5 0 3 6 0 0 0 8 END