HEADER IRON-BINDING PROTEIN 18-JAN-13 3ZJM TITLE ILE(149)G11PHE MUTATION OF M.ACETIVORANS PROTOGLOBIN IN TITLE 2 COMPLEX WITH CYANIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOGLOBIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA ACETIVORANS; SOURCE 3 ORGANISM_TAXID: 2214; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IRON-BINDING PROTEIN, HAEM-DISTAL SITE MUTATION EXPDTA X-RAY DIFFRACTION AUTHOR A.PESCE,L.TILLEMAN,J.DONNE,E.ASTE,P.ASCENZI,C.CIACCIO,M.COLETTA, AUTHOR 2 L.MOENS,C.VIAPPIANI,S.DEWILDE,M.BOLOGNESI,M.NARDINI REVDAT 2 21-DEC-16 3ZJM 1 AUTHOR JRNL REVDAT 1 26-JUN-13 3ZJM 0 JRNL AUTH A.PESCE,L.TILLEMAN,J.DONNE,E.ASTE,P.ASCENZI,C.CIACCIO, JRNL AUTH 2 M.COLETTA,L.MOENS,C.VIAPPIANI,S.DEWILDE,M.BOLOGNESI, JRNL AUTH 3 M.NARDINI JRNL TITL STRUCTURE AND HAEM-DISTAL SITE PLASTICITY IN METHANOSARCINA JRNL TITL 2 ACETIVORANS PROTOGLOBIN. JRNL REF PLOS ONE V. 8 66144 2013 JRNL REFN ISSN 1932-6203 JRNL PMID 23776624 JRNL DOI 10.1371/JOURNAL.PONE.0066144 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.32 REMARK 3 NUMBER OF REFLECTIONS : 88281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17996 REMARK 3 R VALUE (WORKING SET) : 0.17774 REMARK 3 FREE R VALUE : 0.22166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 4654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.500 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.539 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.248 REMARK 3 BIN FREE R VALUE SET COUNT : 366 REMARK 3 BIN FREE R VALUE : 0.307 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 183 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.339 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10 REMARK 3 B22 (A**2) : -0.03 REMARK 3 B33 (A**2) : 0.11 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.14 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5325 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7322 ; 1.553 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 5.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;38.883 ;23.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;13.407 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4212 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2961 ; 1.446 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4823 ; 2.268 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2364 ; 3.179 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2476 ; 4.475 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5325 ; 1.863 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 506 ; 8.243 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5122 ; 7.408 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 3ZJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-13. REMARK 100 THE PDBE ID CODE IS EBI-55478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.50 REMARK 200 RESOLUTION RANGE LOW (A) : 26.14 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.3 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.2 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VEB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 10% ISOPROPANOL, REMARK 280 0.1 M HEPES PH 7.5, 0.02 M POTASSIUM FERRICYANIDE, 0.01 M KCN REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.36000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.36000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.52721 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.41751 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 4 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 GLU B 4 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 VAL C 3 REMARK 465 GLU C 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS C 5 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1A ASP C 51 NZ LYS C 160 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 -164.82 -117.83 REMARK 500 ASP A 106 -165.08 -108.81 REMARK 500 ASN A 126 -2.13 72.42 REMARK 500 ASP B 106 -163.53 -114.84 REMARK 500 ASN B 126 -3.15 71.30 REMARK 500 TYR C 72 -38.58 -34.53 REMARK 500 ASP C 106 -161.68 -112.65 REMARK 500 ASN C 126 -7.16 73.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM A 200 NA REMARK 620 2 HEM A 200 NB 91.7 REMARK 620 3 HEM A 200 NC 176.8 87.0 REMARK 620 4 HEM A 200 ND 90.0 177.4 91.2 REMARK 620 5 CYN A 201 C 91.5 91.9 91.5 89.9 REMARK 620 6 HIS A 120 NE2 84.0 92.3 93.2 86.0 173.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HEM B 200 NB 92.6 REMARK 620 3 HEM B 200 NC 90.0 86.9 REMARK 620 4 HEM B 200 NA 89.3 92.3 178.9 REMARK 620 5 HEM B 200 ND 86.3 178.8 93.5 87.3 REMARK 620 6 CYN B 201 C 174.5 92.9 90.3 90.5 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM C 200 NA REMARK 620 2 HEM C 200 ND 88.0 REMARK 620 3 HEM C 200 NB 91.7 178.7 REMARK 620 4 HEM C 200 NC 179.1 91.5 88.9 REMARK 620 5 CYN C 201 C 94.0 88.8 92.6 85.3 REMARK 620 6 HIS C 120 NE2 89.9 87.2 91.5 90.8 174.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE C1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B1196 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZJH RELATED DB: PDB REMARK 900 TRP(60)B9ALA MUTATION OF M.ACETIVORANS PROTOGLOBIN IN REMARK 900 COMPLEX WITH CYANIDE REMARK 900 RELATED ID: 3ZJI RELATED DB: PDB REMARK 900 TYR(61)B10ALA MUTATION OF M.ACETIVORANS PROTOGLOBIN IN REMARK 900 COMPLEX WITH CYANIDE REMARK 900 RELATED ID: 3ZJJ RELATED DB: PDB REMARK 900 PHE(93)E11LEU MUTATION OF M.ACETIVORANS PROTOGLOBIN IN REMARK 900 COMPLEX WITH CYANIDE REMARK 900 RELATED ID: 3ZJL RELATED DB: PDB REMARK 900 LEU(142)G4ALA MUTATION OF M.ACETIVORANS PROTOGLOBIN IN REMARK 900 COMPLEX WITH CYANIDE REMARK 900 RELATED ID: 3ZJN RELATED DB: PDB REMARK 900 M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH CYANIDE REMARK 900 RELATED ID: 3ZJO RELATED DB: PDB REMARK 900 M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH AZIDE REMARK 900 RELATED ID: 3ZJP RELATED DB: PDB REMARK 900 M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH IMIDAZOLE REMARK 900 RELATED ID: 3ZJQ RELATED DB: PDB REMARK 900 M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH NICOTINAMIDE REMARK 900 RELATED ID: 3ZJR RELATED DB: PDB REMARK 900 M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH CYANIDE AND REMARK 900 XENON REMARK 900 RELATED ID: 3ZJS RELATED DB: PDB REMARK 900 M.ACETIVORANS PROTOGLOBIN IN COMPLEX WITH AZIDE AND REMARK 900 XENON REMARK 999 REMARK 999 SEQUENCE REMARK 999 C101S MUTATED FOR CRYSTALLIZATION PURPOSES, I149F MUTATION DBREF 3ZJM A 1 195 UNP Q8TLY9 Q8TLY9_METAC 1 195 DBREF 3ZJM B 1 195 UNP Q8TLY9 Q8TLY9_METAC 1 195 DBREF 3ZJM C 1 195 UNP Q8TLY9 Q8TLY9_METAC 1 195 SEQADV 3ZJM SER A 101 UNP Q8TLY9 CYS 101 ENGINEERED MUTATION SEQADV 3ZJM PHE A 149 UNP Q8TLY9 ILE 149 ENGINEERED MUTATION SEQADV 3ZJM SER B 101 UNP Q8TLY9 CYS 101 ENGINEERED MUTATION SEQADV 3ZJM PHE B 149 UNP Q8TLY9 ILE 149 ENGINEERED MUTATION SEQADV 3ZJM SER C 101 UNP Q8TLY9 CYS 101 ENGINEERED MUTATION SEQADV 3ZJM PHE C 149 UNP Q8TLY9 ILE 149 ENGINEERED MUTATION SEQRES 1 A 195 MET SER VAL GLU LYS ILE PRO GLY TYR THR TYR GLY GLU SEQRES 2 A 195 THR GLU ASN ARG ALA PRO PHE ASN LEU GLU ASP LEU LYS SEQRES 3 A 195 LEU LEU LYS GLU ALA VAL MET PHE THR ALA GLU ASP GLU SEQRES 4 A 195 GLU TYR ILE GLN LYS ALA GLY GLU VAL LEU GLU ASP GLN SEQRES 5 A 195 VAL GLU GLU ILE LEU ASP THR TRP TYR GLY PHE VAL GLY SEQRES 6 A 195 SER HIS PRO HIS LEU LEU TYR TYR PHE THR SER PRO ASP SEQRES 7 A 195 GLY THR PRO ASN GLU LYS TYR LEU ALA ALA VAL ARG LYS SEQRES 8 A 195 ARG PHE SER ARG TRP ILE LEU ASP THR SER ASN ARG SER SEQRES 9 A 195 TYR ASP GLN ALA TRP LEU ASP TYR GLN TYR GLU ILE GLY SEQRES 10 A 195 LEU ARG HIS HIS ARG THR LYS LYS ASN GLN THR ASP ASN SEQRES 11 A 195 VAL GLU SER VAL PRO ASN ILE GLY TYR ARG TYR LEU VAL SEQRES 12 A 195 ALA PHE ILE TYR PRO PHE THR ALA THR MET LYS PRO PHE SEQRES 13 A 195 LEU ALA ARG LYS GLY HIS THR PRO GLU GLU VAL GLU LYS SEQRES 14 A 195 MET TYR GLN ALA TRP PHE LYS ALA THR THR LEU GLN VAL SEQRES 15 A 195 ALA LEU TRP SER TYR PRO TYR VAL LYS TYR GLY ASP PHE SEQRES 1 B 195 MET SER VAL GLU LYS ILE PRO GLY TYR THR TYR GLY GLU SEQRES 2 B 195 THR GLU ASN ARG ALA PRO PHE ASN LEU GLU ASP LEU LYS SEQRES 3 B 195 LEU LEU LYS GLU ALA VAL MET PHE THR ALA GLU ASP GLU SEQRES 4 B 195 GLU TYR ILE GLN LYS ALA GLY GLU VAL LEU GLU ASP GLN SEQRES 5 B 195 VAL GLU GLU ILE LEU ASP THR TRP TYR GLY PHE VAL GLY SEQRES 6 B 195 SER HIS PRO HIS LEU LEU TYR TYR PHE THR SER PRO ASP SEQRES 7 B 195 GLY THR PRO ASN GLU LYS TYR LEU ALA ALA VAL ARG LYS SEQRES 8 B 195 ARG PHE SER ARG TRP ILE LEU ASP THR SER ASN ARG SER SEQRES 9 B 195 TYR ASP GLN ALA TRP LEU ASP TYR GLN TYR GLU ILE GLY SEQRES 10 B 195 LEU ARG HIS HIS ARG THR LYS LYS ASN GLN THR ASP ASN SEQRES 11 B 195 VAL GLU SER VAL PRO ASN ILE GLY TYR ARG TYR LEU VAL SEQRES 12 B 195 ALA PHE ILE TYR PRO PHE THR ALA THR MET LYS PRO PHE SEQRES 13 B 195 LEU ALA ARG LYS GLY HIS THR PRO GLU GLU VAL GLU LYS SEQRES 14 B 195 MET TYR GLN ALA TRP PHE LYS ALA THR THR LEU GLN VAL SEQRES 15 B 195 ALA LEU TRP SER TYR PRO TYR VAL LYS TYR GLY ASP PHE SEQRES 1 C 195 MET SER VAL GLU LYS ILE PRO GLY TYR THR TYR GLY GLU SEQRES 2 C 195 THR GLU ASN ARG ALA PRO PHE ASN LEU GLU ASP LEU LYS SEQRES 3 C 195 LEU LEU LYS GLU ALA VAL MET PHE THR ALA GLU ASP GLU SEQRES 4 C 195 GLU TYR ILE GLN LYS ALA GLY GLU VAL LEU GLU ASP GLN SEQRES 5 C 195 VAL GLU GLU ILE LEU ASP THR TRP TYR GLY PHE VAL GLY SEQRES 6 C 195 SER HIS PRO HIS LEU LEU TYR TYR PHE THR SER PRO ASP SEQRES 7 C 195 GLY THR PRO ASN GLU LYS TYR LEU ALA ALA VAL ARG LYS SEQRES 8 C 195 ARG PHE SER ARG TRP ILE LEU ASP THR SER ASN ARG SER SEQRES 9 C 195 TYR ASP GLN ALA TRP LEU ASP TYR GLN TYR GLU ILE GLY SEQRES 10 C 195 LEU ARG HIS HIS ARG THR LYS LYS ASN GLN THR ASP ASN SEQRES 11 C 195 VAL GLU SER VAL PRO ASN ILE GLY TYR ARG TYR LEU VAL SEQRES 12 C 195 ALA PHE ILE TYR PRO PHE THR ALA THR MET LYS PRO PHE SEQRES 13 C 195 LEU ALA ARG LYS GLY HIS THR PRO GLU GLU VAL GLU LYS SEQRES 14 C 195 MET TYR GLN ALA TRP PHE LYS ALA THR THR LEU GLN VAL SEQRES 15 C 195 ALA LEU TRP SER TYR PRO TYR VAL LYS TYR GLY ASP PHE HET HEM A 200 43 HET CYN A 201 2 HET HEM B 200 43 HET CYN B 201 2 HET HEM C 200 43 HET CYN C 201 2 HET GOL A1196 6 HET GOL C1196 6 HET GOL C1197 6 HET EPE C1198 15 HET EPE B1196 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE HETNAM 2 EPE ETHANESULFONIC ACID HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM CYN CYANIDE ION HETSYN EPE HEPES HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 CYN 3(C N 1-) FORMUL 7 HOH *479(H2 O) HELIX 1 1 ASN A 21 VAL A 32 1 12 HELIX 2 2 THR A 35 GLU A 50 1 16 HELIX 3 3 GLN A 52 SER A 66 1 15 HELIX 4 4 HIS A 67 TYR A 72 1 6 HELIX 5 5 ASN A 82 ARG A 103 1 22 HELIX 6 6 ASP A 106 HIS A 121 1 16 HELIX 7 7 GLY A 138 PHE A 145 1 8 HELIX 8 8 PHE A 145 ALA A 158 1 14 HELIX 9 9 THR A 163 SER A 186 1 24 HELIX 10 10 TYR A 187 TYR A 189 5 3 HELIX 11 11 ASN B 21 VAL B 32 1 12 HELIX 12 12 THR B 35 GLU B 50 1 16 HELIX 13 13 GLN B 52 SER B 66 1 15 HELIX 14 14 HIS B 67 TYR B 72 1 6 HELIX 15 15 ASN B 82 ARG B 103 1 22 HELIX 16 16 ASP B 106 HIS B 121 1 16 HELIX 17 17 GLY B 138 ALA B 158 1 21 HELIX 18 18 THR B 163 SER B 186 1 24 HELIX 19 19 TYR B 187 TYR B 189 5 3 HELIX 20 20 ASN C 21 VAL C 32 1 12 HELIX 21 21 THR C 35 GLU C 50 1 16 HELIX 22 22 GLN C 52 SER C 66 1 15 HELIX 23 23 HIS C 67 TYR C 72 1 6 HELIX 24 24 ASN C 82 ARG C 103 1 22 HELIX 25 25 ASP C 106 HIS C 121 1 16 HELIX 26 26 GLY C 138 PHE C 145 1 8 HELIX 27 27 PHE C 145 LEU C 157 1 13 HELIX 28 28 THR C 163 SER C 186 1 24 HELIX 29 29 TYR C 187 VAL C 190 5 4 LINK FE HEM A 200 C CYN A 201 1555 1555 2.22 LINK FE HEM A 200 NE2 HIS A 120 1555 1555 2.07 LINK FE HEM B 200 NE2 HIS B 120 1555 1555 2.03 LINK FE HEM B 200 C CYN B 201 1555 1555 2.20 LINK FE HEM C 200 NE2 HIS C 120 1555 1555 2.14 LINK FE HEM C 200 C CYN C 201 1555 1555 2.13 SITE 1 AC1 26 LEU A 70 TYR A 73 PHE A 74 TYR A 85 SITE 2 AC1 26 VAL A 89 ARG A 92 PHE A 93 TRP A 96 SITE 3 AC1 26 TYR A 112 ILE A 116 ARG A 119 HIS A 120 SITE 4 AC1 26 LYS A 125 ASN A 126 ILE A 137 TYR A 141 SITE 5 AC1 26 LEU A 142 PHE A 145 ILE A 146 VAL A 182 SITE 6 AC1 26 TRP A 185 CYN A 201 HOH A2084 HOH A2085 SITE 7 AC1 26 HOH A2108 HOH A2112 SITE 1 AC2 4 TRP A 60 TYR A 61 PHE A 93 HEM A 200 SITE 1 AC3 25 LEU B 70 TYR B 73 PHE B 74 TYR B 85 SITE 2 AC3 25 VAL B 89 ARG B 92 PHE B 93 TRP B 96 SITE 3 AC3 25 TYR B 112 ARG B 119 HIS B 120 LYS B 125 SITE 4 AC3 25 ASN B 126 ILE B 137 TYR B 141 LEU B 142 SITE 5 AC3 25 PHE B 145 ILE B 146 VAL B 182 TRP B 185 SITE 6 AC3 25 CYN B 201 HOH B2112 HOH B2113 HOH B2141 SITE 7 AC3 25 HOH B2145 SITE 1 AC4 4 TRP B 60 TYR B 61 PHE B 93 HEM B 200 SITE 1 AC5 25 LEU C 70 TYR C 73 PHE C 74 TYR C 85 SITE 2 AC5 25 VAL C 89 ARG C 92 PHE C 93 TRP C 96 SITE 3 AC5 25 TYR C 112 ILE C 116 ARG C 119 HIS C 120 SITE 4 AC5 25 LYS C 125 ASN C 126 ILE C 137 TYR C 141 SITE 5 AC5 25 LEU C 142 PHE C 145 ILE C 146 TRP C 185 SITE 6 AC5 25 CYN C 201 HOH C2097 HOH C2098 HOH C2118 SITE 7 AC5 25 HOH C2124 SITE 1 AC6 4 TRP C 60 TYR C 61 PHE C 93 HEM C 200 SITE 1 AC7 7 ARG A 122 THR A 123 GLN A 127 GLY A 161 SITE 2 AC7 7 HOH A2103 HOH A2107 HOH A2131 SITE 1 AC8 5 PRO C 164 LYS C 191 TYR C 192 HOH C2154 SITE 2 AC8 5 HOH C2159 SITE 1 AC9 6 PRO A 77 ASP A 78 GLY A 79 THR C 59 SITE 2 AC9 6 THR C 152 HOH C2140 SITE 1 BC1 10 ARG B 95 LEU B 98 ASN B 102 HOH B2117 SITE 2 BC1 10 GLN C 43 SER C 101 ASN C 102 ARG C 103 SITE 3 BC1 10 SER C 104 TYR C 105 SITE 1 BC2 11 THR B 100 SER B 101 ASN B 102 ARG B 103 SITE 2 BC2 11 SER B 104 TYR B 105 HOH B2069 HOH B2182 SITE 3 BC2 11 ARG C 95 LEU C 98 ASN C 102 CRYST1 124.720 48.030 98.680 90.00 94.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008018 0.000000 0.000586 0.00000 SCALE2 0.000000 0.020820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010161 0.00000 MASTER 424 0 11 29 0 0 36 6 0 0 0 45 END