HEADER TRANSFERASE/RNA 23-JUL-13 3WFS TITLE TRNA PROCESSING ENZYME COMPLEX 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (74-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLY A POLYMERASE; COMPND 7 CHAIN: C, D; COMPND 8 EC: 2.7.7.72; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT, AQUIFEX AEOLICUS (STRAIN SOURCE 7 VF5); SOURCE 8 ORGANISM_TAXID: 32630, 224324; SOURCE 9 STRAIN: VF5; SOURCE 10 GENE: PCNB2; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TERMINAL NUCLEOTIDE TRANSFERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.YAMASHITA,D.TAKESHITA,K.TOMITA REVDAT 3 28-JUN-17 3WFS 1 SOURCE REVDAT 2 13-AUG-14 3WFS 1 JRNL REVDAT 1 01-JAN-14 3WFS 0 JRNL AUTH S.YAMASHITA,D.TAKESHITA,K.TOMITA JRNL TITL TRANSLOCATION AND ROTATION OF TRNA DURING JRNL TITL 2 TEMPLATE-INDEPENDENT RNA POLYMERIZATION BY TRNA JRNL TITL 3 NUCLEOTIDYLTRANSFERASE JRNL REF STRUCTURE V. 22 315 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24389024 JRNL DOI 10.1016/J.STR.2013.12.002 REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.8 REMARK 3 NUMBER OF REFLECTIONS : 27165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8610 - 7.0374 0.95 3199 181 0.2011 0.2448 REMARK 3 2 7.0374 - 5.6276 1.00 3356 167 0.2477 0.3051 REMARK 3 3 5.6276 - 4.9287 1.00 3304 183 0.2225 0.2749 REMARK 3 4 4.9287 - 4.4837 1.00 3328 158 0.2222 0.2625 REMARK 3 5 4.4837 - 4.1655 1.00 3331 183 0.2207 0.2837 REMARK 3 6 4.1655 - 3.9219 1.00 3308 168 0.2329 0.2660 REMARK 3 7 3.9219 - 3.7269 0.89 2926 145 0.2531 0.3123 REMARK 3 8 3.7269 - 3.5656 0.59 1948 105 0.2627 0.2766 REMARK 3 9 3.5656 - 3.4290 0.26 842 52 0.2631 0.3572 REMARK 3 10 3.4290 - 3.3113 0.08 260 21 0.2543 0.2486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 10668 REMARK 3 ANGLE : 0.718 15118 REMARK 3 CHIRALITY : 0.034 1806 REMARK 3 PLANARITY : 0.003 1385 REMARK 3 DIHEDRAL : 13.073 4413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:74) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0777 5.1691 -29.1272 REMARK 3 T TENSOR REMARK 3 T11: 1.8133 T22: 1.2666 REMARK 3 T33: 0.6617 T12: 0.4147 REMARK 3 T13: 0.2483 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.5751 L22: 3.4221 REMARK 3 L33: 1.3868 L12: -1.6169 REMARK 3 L13: -0.2701 L23: 1.8595 REMARK 3 S TENSOR REMARK 3 S11: -0.2549 S12: -0.3620 S13: 0.0101 REMARK 3 S21: -0.6933 S22: 0.3563 S23: -0.2845 REMARK 3 S31: 1.3219 S32: 1.3758 S33: -0.1464 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:74) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8313 9.3899 32.8088 REMARK 3 T TENSOR REMARK 3 T11: 1.8999 T22: 1.3179 REMARK 3 T33: 0.4940 T12: -0.0275 REMARK 3 T13: 0.1386 T23: -0.1734 REMARK 3 L TENSOR REMARK 3 L11: 1.6890 L22: 1.8563 REMARK 3 L33: 0.9919 L12: -0.4779 REMARK 3 L13: -0.9461 L23: 1.1138 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.9778 S13: 0.5357 REMARK 3 S21: 0.8804 S22: 0.9363 S23: -0.2422 REMARK 3 S31: -0.9769 S32: 1.7028 S33: -0.5024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 5:448 OR RESSEQ 1001:1002) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3972 25.9476 -2.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.1804 REMARK 3 T33: 0.4977 T12: -0.0376 REMARK 3 T13: 0.0913 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 2.2492 L22: 4.2624 REMARK 3 L33: 2.9884 L12: -0.2595 REMARK 3 L13: -0.5688 L23: -0.3458 REMARK 3 S TENSOR REMARK 3 S11: -0.3182 S12: 0.1944 S13: -0.1636 REMARK 3 S21: 0.9399 S22: -0.0562 S23: 0.2842 REMARK 3 S31: 0.3008 S32: -0.0727 S33: 0.1602 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 473:504) REMARK 3 ORIGIN FOR THE GROUP (A): 79.6222 33.7942 -28.9418 REMARK 3 T TENSOR REMARK 3 T11: 1.1336 T22: 3.2760 REMARK 3 T33: 2.8351 T12: -0.4421 REMARK 3 T13: 0.4396 T23: -1.1150 REMARK 3 L TENSOR REMARK 3 L11: 2.3444 L22: 4.5374 REMARK 3 L33: 0.7971 L12: -3.1237 REMARK 3 L13: -0.3956 L23: 1.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.1171 S12: -0.1492 S13: 0.9185 REMARK 3 S21: 0.0878 S22: -0.1060 S23: -0.3246 REMARK 3 S31: -0.1328 S32: 0.1811 S33: 0.1991 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 5:448 OR RESSEQ 1001:1002) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7853 -14.1018 3.9113 REMARK 3 T TENSOR REMARK 3 T11: 0.3737 T22: 0.3783 REMARK 3 T33: 0.2393 T12: -0.0653 REMARK 3 T13: -0.0047 T23: 0.1466 REMARK 3 L TENSOR REMARK 3 L11: 1.9164 L22: 4.7128 REMARK 3 L33: 2.6286 L12: -0.5875 REMARK 3 L13: -0.8167 L23: 0.3873 REMARK 3 S TENSOR REMARK 3 S11: 0.7149 S12: -0.2282 S13: 0.4415 REMARK 3 S21: -1.4635 S22: -0.0386 S23: -0.9085 REMARK 3 S31: -1.0107 S32: 0.9453 S33: 0.3037 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 473:504) REMARK 3 ORIGIN FOR THE GROUP (A): 72.4781 -17.4793 49.0855 REMARK 3 T TENSOR REMARK 3 T11: 1.2696 T22: 1.7890 REMARK 3 T33: 0.8942 T12: 0.4927 REMARK 3 T13: -0.5556 T23: 0.1945 REMARK 3 L TENSOR REMARK 3 L11: 3.5194 L22: 7.6083 REMARK 3 L33: 7.4606 L12: -1.2311 REMARK 3 L13: 2.6111 L23: -2.5119 REMARK 3 S TENSOR REMARK 3 S11: 0.4554 S12: -0.0378 S13: -0.5074 REMARK 3 S21: -0.1119 S22: -0.1615 S23: -0.1921 REMARK 3 S31: -0.1592 S32: 0.1539 S33: -0.0792 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27238 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3WFO, 3L0U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.60500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.60500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 74.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK C 1 REMARK 465 UNK C 2 REMARK 465 UNK C 3 REMARK 465 UNK C 4 REMARK 465 UNK C 8 REMARK 465 UNK C 9 REMARK 465 UNK C 10 REMARK 465 UNK C 11 REMARK 465 UNK C 12 REMARK 465 UNK C 13 REMARK 465 UNK C 14 REMARK 465 UNK C 15 REMARK 465 GLY C 16 REMARK 465 LYS C 87 REMARK 465 ARG C 88 REMARK 465 GLY C 89 REMARK 465 PHE C 90 REMARK 465 LEU C 91 REMARK 465 ILE C 92 REMARK 465 LYS C 93 REMARK 465 ARG C 94 REMARK 465 SER C 148 REMARK 465 ILE C 149 REMARK 465 GLY C 150 REMARK 465 ALA C 151 REMARK 465 LYS C 152 REMARK 465 GLN C 153 REMARK 465 GLN C 265 REMARK 465 GLY C 266 REMARK 465 GLU C 267 REMARK 465 HIS C 268 REMARK 465 HIS C 269 REMARK 465 ILE C 270 REMARK 465 TYR C 271 REMARK 465 PHE C 333 REMARK 465 ALA C 334 REMARK 465 VAL C 335 REMARK 465 ARG C 336 REMARK 465 GLU C 337 REMARK 465 GLY C 338 REMARK 465 LYS C 339 REMARK 465 VAL C 340 REMARK 465 UNK C 449 REMARK 465 UNK C 450 REMARK 465 UNK C 451 REMARK 465 UNK C 452 REMARK 465 UNK C 453 REMARK 465 UNK C 454 REMARK 465 UNK C 455 REMARK 465 UNK C 456 REMARK 465 UNK C 457 REMARK 465 UNK C 458 REMARK 465 UNK C 459 REMARK 465 UNK C 460 REMARK 465 UNK C 461 REMARK 465 UNK C 462 REMARK 465 UNK C 463 REMARK 465 UNK C 464 REMARK 465 UNK C 465 REMARK 465 UNK C 466 REMARK 465 UNK C 467 REMARK 465 UNK C 468 REMARK 465 UNK C 469 REMARK 465 UNK C 470 REMARK 465 UNK C 471 REMARK 465 UNK C 472 REMARK 465 UNK C 489 REMARK 465 UNK C 490 REMARK 465 UNK C 505 REMARK 465 UNK C 506 REMARK 465 UNK C 507 REMARK 465 UNK C 508 REMARK 465 UNK C 509 REMARK 465 UNK C 510 REMARK 465 UNK C 511 REMARK 465 UNK C 512 REMARK 465 UNK D 1 REMARK 465 UNK D 2 REMARK 465 UNK D 3 REMARK 465 UNK D 4 REMARK 465 UNK D 8 REMARK 465 UNK D 9 REMARK 465 UNK D 10 REMARK 465 UNK D 11 REMARK 465 UNK D 12 REMARK 465 UNK D 13 REMARK 465 UNK D 14 REMARK 465 UNK D 15 REMARK 465 GLY D 16 REMARK 465 SER D 148 REMARK 465 ILE D 149 REMARK 465 GLY D 150 REMARK 465 ALA D 151 REMARK 465 LYS D 152 REMARK 465 GLN D 153 REMARK 465 GLN D 265 REMARK 465 GLY D 266 REMARK 465 GLU D 267 REMARK 465 HIS D 268 REMARK 465 HIS D 269 REMARK 465 ILE D 270 REMARK 465 TYR D 271 REMARK 465 VAL D 335 REMARK 465 ARG D 336 REMARK 465 GLU D 337 REMARK 465 GLY D 338 REMARK 465 LYS D 339 REMARK 465 VAL D 340 REMARK 465 THR D 341 REMARK 465 UNK D 449 REMARK 465 UNK D 450 REMARK 465 UNK D 451 REMARK 465 UNK D 452 REMARK 465 UNK D 453 REMARK 465 UNK D 454 REMARK 465 UNK D 455 REMARK 465 UNK D 456 REMARK 465 UNK D 457 REMARK 465 UNK D 458 REMARK 465 UNK D 459 REMARK 465 UNK D 460 REMARK 465 UNK D 461 REMARK 465 UNK D 462 REMARK 465 UNK D 463 REMARK 465 UNK D 464 REMARK 465 UNK D 465 REMARK 465 UNK D 466 REMARK 465 UNK D 467 REMARK 465 UNK D 468 REMARK 465 UNK D 469 REMARK 465 UNK D 470 REMARK 465 UNK D 471 REMARK 465 UNK D 472 REMARK 465 UNK D 489 REMARK 465 UNK D 490 REMARK 465 UNK D 505 REMARK 465 UNK D 506 REMARK 465 UNK D 507 REMARK 465 UNK D 508 REMARK 465 UNK D 509 REMARK 465 UNK D 510 REMARK 465 UNK D 511 REMARK 465 UNK D 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U A 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U A 16 C6 REMARK 470 U A 17 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U A 17 C6 REMARK 470 U B 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 16 C6 REMARK 470 U B 17 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 17 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.127 REMARK 500 G B 1 P G B 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WFO RELATED DB: PDB REMARK 900 RELATED ID: 3WFP RELATED DB: PDB REMARK 900 RELATED ID: 3WFQ RELATED DB: PDB REMARK 900 RELATED ID: 3WFR RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS CRYSTALLIZED THE ENTIRE PROTEIN, RESIDUES 1-512 FOR C, REMARK 999 D CHAINS. THE AUTHORS KNOW THE COMPLETE SEQUENCE. THE SEQUENCE OF REMARK 999 RESIDUES 1-15 AND 449-512 (THE UNK PART) IS AS FOLLOWS. (1) REMARK 999 MENIEIVSSGKHTLH (15), (449) REMARK 999 EEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTKNLKPLDEG(512 REMARK 999 ) THE AUTHORS COULD OBSERVE A PART OF N- AND C-TERMINAL RESIDUES (1- REMARK 999 15 AND 449-512, RESPECTIVLY) OF ALL PROTEIN CHAINS BUT THEY ARE NOT REMARK 999 SURE WHICH PART CORRESPONDS WITH THESE OBSERVED RESIDUES. SO THE REMARK 999 RESIDUE NUMBERS OF UNK ARE MEANINGLESS. DBREF1 3WFS A 1 74 GB CP004077 DBREF2 3WFS A 498539165 1577018 1577091 DBREF1 3WFS B 1 74 GB CP004077 DBREF2 3WFS B 498539165 1577018 1577091 DBREF 3WFS C 1 15 PDB 3WFS 3WFS 1 15 DBREF 3WFS C 16 448 UNP O67911 O67911_AQUAE 16 448 DBREF 3WFS C 449 512 PDB 3WFS 3WFS 449 512 DBREF 3WFS D 1 15 PDB 3WFS 3WFS 1 15 DBREF 3WFS D 16 448 UNP O67911 O67911_AQUAE 16 448 DBREF 3WFS D 449 512 PDB 3WFS 3WFS 449 512 SEQRES 1 A 74 G G C C A G G U A G C U C SEQRES 2 A 74 A G U U G G U A G A G C A SEQRES 3 A 74 C U G G A C U G A A A A U SEQRES 4 A 74 C C A G G U G U C G G C G SEQRES 5 A 74 G U U C G A U U C C G C C SEQRES 6 A 74 C C U G G C C A C SEQRES 1 B 74 G G C C A G G U A G C U C SEQRES 2 B 74 A G U U G G U A G A G C A SEQRES 3 B 74 C U G G A C U G A A A A U SEQRES 4 B 74 C C A G G U G U C G G C G SEQRES 5 B 74 G U U C G A U U C C G C C SEQRES 6 B 74 C C U G G C C A C SEQRES 1 C 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 C 512 UNK UNK GLY LEU ASN PHE TYR LEU SER TYR PHE ASP ASP SEQRES 3 C 512 VAL ALA LYS VAL LEU PRO ARG GLU HIS TYR CYS PHE ILE SEQRES 4 C 512 VAL GLY GLY TRP VAL ARG ASP ARG ILE LEU GLY GLU PRO SEQRES 5 C 512 VAL GLY TYR ASN ILE ASP VAL ASP PHE LEU THR THR ALA SEQRES 6 C 512 ASP PRO VAL GLU LEU ALA LYS ASN PHE ALA LYS ARG ILE SEQRES 7 C 512 GLY GLY HIS PHE PHE VAL PHE GLU LYS ARG GLY PHE LEU SEQRES 8 C 512 ILE LYS ARG PRO THR ILE ALA SER VAL VAL LEU HIS LEU SEQRES 9 C 512 PRO PRO TYR ARG TYR ARG PHE ASP PHE SER PRO LEU LYS SEQRES 10 C 512 GLY LYS ASP LEU GLU LYS ALA LEU ILE GLU ASP LEU LYS SEQRES 11 C 512 GLU ARG ASP PHE THR ALA ASN ALA ILE ALA VAL ASN LEU SEQRES 12 C 512 ASP ASP VAL LEU SER ILE GLY ALA LYS GLN THR ILE VAL SEQRES 13 C 512 TYR ASP PRO THR GLY GLY ILE LYS ASP LEU GLU GLN GLY SEQRES 14 C 512 LEU LEU ARG PRO VAL SER ILE GLU ASN LEU LYS ARG ASP SEQRES 15 C 512 PRO VAL ARG VAL LEU ARG GLY PHE ARG ILE ALA ILE GLU SEQRES 16 C 512 LYS ASN LEU GLN LEU THR GLU ASP PHE TYR GLU PHE VAL SEQRES 17 C 512 LYS GLU ASP PRO ARG ILE VAL LEU LYS SER ALA VAL GLU SEQRES 18 C 512 ARG ILE THR HIS GLU LEU PHE LYS ILE MET LYS GLU LYS SEQRES 19 C 512 THR ALA HIS LYS VAL ILE ARG GLU LEU TYR GLU TYR GLY SEQRES 20 C 512 VAL LEU GLU ALA ILE ILE PRO GLU ILE GLY ARG LEU ARG SEQRES 21 C 512 GLU VAL LYS ASP GLN GLY GLU HIS HIS ILE TYR PRO LEU SEQRES 22 C 512 ASP GLU HIS THR LEU LYS THR LEU GLU TYR LEU GLU GLN SEQRES 23 C 512 VAL ILE GLU ASP ARG ALA LYS TYR LEU SER ALA GLU LEU SEQRES 24 C 512 LEU GLU ASN PHE GLY LYS LYS ARG VAL LEU GLY GLU PHE SEQRES 25 C 512 THR ASP VAL GLU LEU LEU LYS TRP GLY ALA LEU PHE HIS SEQRES 26 C 512 ASP ILE GLY LYS PRO GLN THR PHE ALA VAL ARG GLU GLY SEQRES 27 C 512 LYS VAL THR PHE TYR GLU HIS ASP LYS VAL GLY ALA GLN SEQRES 28 C 512 ILE VAL ARG GLU ILE GLY GLU ARG LEU ARG TRP GLY ASP SEQRES 29 C 512 GLU ALA THR GLU PHE VAL ALA LYS LEU VAL ARG HIS HIS SEQRES 30 C 512 LEU ARG PRO PHE PHE LEU ARG GLU ALA PHE LYS LYS GLY SEQRES 31 C 512 GLU LEU LYS ARG ARG GLY MET ALA ASN PHE TRP ARG GLU SEQRES 32 C 512 CYS GLY ASP ILE ALA PRO HIS LEU PHE LEU LEU SER ILE SEQRES 33 C 512 ALA ASP ALA MET ALA SER GLY ASP GLU GLU GLU ASP ILE SEQRES 34 C 512 LYS ALA LEU MET GLU THR ILE ALA GLU LEU GLU SER PHE SEQRES 35 C 512 ASN ARG ASN GLU MET LYS UNK UNK UNK UNK UNK UNK UNK SEQRES 36 C 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 37 C 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 38 C 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 39 C 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 40 C 512 UNK UNK UNK UNK UNK SEQRES 1 D 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 D 512 UNK UNK GLY LEU ASN PHE TYR LEU SER TYR PHE ASP ASP SEQRES 3 D 512 VAL ALA LYS VAL LEU PRO ARG GLU HIS TYR CYS PHE ILE SEQRES 4 D 512 VAL GLY GLY TRP VAL ARG ASP ARG ILE LEU GLY GLU PRO SEQRES 5 D 512 VAL GLY TYR ASN ILE ASP VAL ASP PHE LEU THR THR ALA SEQRES 6 D 512 ASP PRO VAL GLU LEU ALA LYS ASN PHE ALA LYS ARG ILE SEQRES 7 D 512 GLY GLY HIS PHE PHE VAL PHE GLU LYS ARG GLY PHE LEU SEQRES 8 D 512 ILE LYS ARG PRO THR ILE ALA SER VAL VAL LEU HIS LEU SEQRES 9 D 512 PRO PRO TYR ARG TYR ARG PHE ASP PHE SER PRO LEU LYS SEQRES 10 D 512 GLY LYS ASP LEU GLU LYS ALA LEU ILE GLU ASP LEU LYS SEQRES 11 D 512 GLU ARG ASP PHE THR ALA ASN ALA ILE ALA VAL ASN LEU SEQRES 12 D 512 ASP ASP VAL LEU SER ILE GLY ALA LYS GLN THR ILE VAL SEQRES 13 D 512 TYR ASP PRO THR GLY GLY ILE LYS ASP LEU GLU GLN GLY SEQRES 14 D 512 LEU LEU ARG PRO VAL SER ILE GLU ASN LEU LYS ARG ASP SEQRES 15 D 512 PRO VAL ARG VAL LEU ARG GLY PHE ARG ILE ALA ILE GLU SEQRES 16 D 512 LYS ASN LEU GLN LEU THR GLU ASP PHE TYR GLU PHE VAL SEQRES 17 D 512 LYS GLU ASP PRO ARG ILE VAL LEU LYS SER ALA VAL GLU SEQRES 18 D 512 ARG ILE THR HIS GLU LEU PHE LYS ILE MET LYS GLU LYS SEQRES 19 D 512 THR ALA HIS LYS VAL ILE ARG GLU LEU TYR GLU TYR GLY SEQRES 20 D 512 VAL LEU GLU ALA ILE ILE PRO GLU ILE GLY ARG LEU ARG SEQRES 21 D 512 GLU VAL LYS ASP GLN GLY GLU HIS HIS ILE TYR PRO LEU SEQRES 22 D 512 ASP GLU HIS THR LEU LYS THR LEU GLU TYR LEU GLU GLN SEQRES 23 D 512 VAL ILE GLU ASP ARG ALA LYS TYR LEU SER ALA GLU LEU SEQRES 24 D 512 LEU GLU ASN PHE GLY LYS LYS ARG VAL LEU GLY GLU PHE SEQRES 25 D 512 THR ASP VAL GLU LEU LEU LYS TRP GLY ALA LEU PHE HIS SEQRES 26 D 512 ASP ILE GLY LYS PRO GLN THR PHE ALA VAL ARG GLU GLY SEQRES 27 D 512 LYS VAL THR PHE TYR GLU HIS ASP LYS VAL GLY ALA GLN SEQRES 28 D 512 ILE VAL ARG GLU ILE GLY GLU ARG LEU ARG TRP GLY ASP SEQRES 29 D 512 GLU ALA THR GLU PHE VAL ALA LYS LEU VAL ARG HIS HIS SEQRES 30 D 512 LEU ARG PRO PHE PHE LEU ARG GLU ALA PHE LYS LYS GLY SEQRES 31 D 512 GLU LEU LYS ARG ARG GLY MET ALA ASN PHE TRP ARG GLU SEQRES 32 D 512 CYS GLY ASP ILE ALA PRO HIS LEU PHE LEU LEU SER ILE SEQRES 33 D 512 ALA ASP ALA MET ALA SER GLY ASP GLU GLU GLU ASP ILE SEQRES 34 D 512 LYS ALA LEU MET GLU THR ILE ALA GLU LEU GLU SER PHE SEQRES 35 D 512 ASN ARG ASN GLU MET LYS UNK UNK UNK UNK UNK UNK UNK SEQRES 36 D 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 37 D 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 38 D 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 39 D 512 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 40 D 512 UNK UNK UNK UNK UNK HET SO4 C1001 5 HET SO4 C1002 5 HET SO4 D1001 5 HET SO4 D1002 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) HELIX 1 1 TYR C 36 LYS C 29 1 -6 HELIX 2 2 GLY C 54 LEU C 62 1 9 HELIX 3 3 ASP C 66 GLY C 79 1 14 HELIX 4 4 ASP C 120 LYS C 130 1 11 HELIX 5 5 LEU C 170 LEU C 147 1 -16 HELIX 6 6 GLY C 161 GLN C 168 1 8 HELIX 7 7 SER C 175 ASP C 182 1 8 HELIX 8 8 VAL C 184 LYS C 196 1 13 HELIX 9 9 THR C 201 ASP C 211 1 11 HELIX 10 10 PRO C 212 SER C 218 5 7 HELIX 11 11 ALA C 219 GLU C 233 1 15 HELIX 12 12 THR C 235 TYR C 246 1 12 HELIX 13 13 GLY C 247 ILE C 253 1 7 HELIX 14 14 PRO C 254 ARG C 260 5 7 HELIX 15 15 LEU C 273 ASP C 290 1 18 HELIX 16 16 ASP C 290 LEU C 295 1 6 HELIX 17 17 SER C 296 ASN C 302 1 7 HELIX 18 18 ASP C 314 PHE C 324 1 11 HELIX 19 19 GLU C 344 LEU C 360 1 17 HELIX 20 20 GLY C 405 HIS C 376 1 -28 HELIX 21 21 LEU C 378 LYS C 389 1 12 HELIX 22 22 LYS C 393 CYS C 404 1 12 HELIX 23 23 ILE C 407 SER C 422 1 16 HELIX 24 24 GLU C 425 ASN C 445 1 21 HELIX 25 25 UNK C 473 UNK C 488 1 16 HELIX 26 26 UNK C 492 UNK C 504 1 13 HELIX 27 27 TYR D 36 LYS D 29 1 -6 HELIX 28 28 GLY D 54 GLY D 50 1 -3 HELIX 29 29 ASP D 66 GLY D 79 1 14 HELIX 30 30 ASP D 133 LYS D 130 1 -2 HELIX 31 31 LEU D 143 LEU D 166 1 18 HELIX 32 32 GLY D 161 GLN D 168 1 8 HELIX 33 33 SER D 175 ASP D 182 1 8 HELIX 34 34 VAL D 184 LYS D 196 1 13 HELIX 35 35 THR D 201 ASP D 211 1 11 HELIX 36 36 PRO D 212 SER D 218 5 7 HELIX 37 37 ALA D 219 GLU D 233 1 15 HELIX 38 38 THR D 235 TYR D 246 1 12 HELIX 39 39 GLY D 247 ILE D 253 1 7 HELIX 40 40 PRO D 254 ARG D 260 5 7 HELIX 41 41 LEU D 299 ASP D 290 1 -8 HELIX 42 42 ASP D 290 LEU D 295 1 6 HELIX 43 43 SER D 296 ASN D 302 1 7 HELIX 44 44 THR D 313 PHE D 324 1 12 HELIX 45 45 GLU D 344 LEU D 360 1 17 HELIX 46 46 GLY D 396 HIS D 376 1 -19 HELIX 47 47 LEU D 411 LYS D 389 1 -21 HELIX 48 48 LYS D 393 CYS D 404 1 12 HELIX 49 49 ILE D 407 SER D 422 1 16 HELIX 50 50 GLU D 425 ASN D 445 1 21 HELIX 51 51 UNK D 473 UNK D 487 1 15 HELIX 52 52 UNK D 492 UNK D 504 1 13 SHEET 1 A 7 HIS C 81 PHE C 85 0 SHEET 2 A 7 ILE C 97 HIS C 103 -1 O ILE C 97 N PHE C 85 SHEET 3 A 7 ARG C 108 PRO C 115 -1 O TYR C 109 N LEU C 102 SHEET 4 A 7 ASN C 56 THR C 63 1 N PHE C 74 O ASP C 133 SHEET 5 A 7 CYS C 37 VAL C 53 -1 N VAL C 53 O ASP C 60 SHEET 6 A 7 ALA C 140 ASN C 142 -1 O VAL C 141 N ILE C 39 SHEET 7 A 7 VAL C 156 TYR C 157 -1 O TYR C 157 N ALA C 140 SHEET 1 B 2 LEU C 170 LEU C 198 0 SHEET 2 B 2 GLN C 199 LEU C 227 1 O GLN C 199 N LEU C 198 SHEET 1 C 2 ARG C 307 VAL C 308 0 SHEET 2 C 2 PHE C 312 THR C 313 -1 O PHE C 312 N VAL C 308 SHEET 1 D 7 HIS D 81 GLU D 86 0 SHEET 2 D 7 THR D 96 HIS D 103 -1 O VAL D 101 N HIS D 81 SHEET 3 D 7 ARG D 108 PRO D 115 -1 O TYR D 109 N LEU D 102 SHEET 4 D 7 ASN D 56 THR D 63 1 N PHE D 74 O ASP D 112 SHEET 5 D 7 CYS D 37 VAL D 53 -1 N VAL D 53 O ASP D 60 SHEET 6 D 7 ALA D 140 ASN D 142 -1 O VAL D 141 N ILE D 39 SHEET 7 D 7 VAL D 156 TYR D 157 -1 O TYR D 157 N ALA D 140 SHEET 1 E 2 LEU D 170 LEU D 171 0 SHEET 2 E 2 GLN D 199 LEU D 200 1 O GLN D 199 N LEU D 171 CISPEP 1 ILE D 92 LYS D 93 0 1.04 CISPEP 2 LYS D 93 ARG D 94 0 2.13 SITE 1 AC1 5 C A 74 GLY C 42 ARG C 45 ASP C 58 SITE 2 AC1 5 ARG C 188 SITE 1 AC2 3 GLY C 54 TYR C 55 ASN C 56 SITE 1 AC3 6 C B 74 GLY D 42 ARG D 45 ASP D 58 SITE 2 AC3 6 ARG D 188 ARG D 191 SITE 1 AC4 3 GLY D 54 TYR D 55 ASN D 56 CRYST1 177.210 148.110 92.250 90.00 98.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005643 0.000000 0.000848 0.00000 SCALE2 0.000000 0.006752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010962 0.00000 MASTER 520 0 4 52 20 0 6 6 0 0 0 92 END