HEADER HYDROLASE, CARBOHYDRATE 13-DEC-12 3W38 TITLE SUGAR BEET ALPHA-GLUCOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MALTASE; COMPND 5 EC: 3.2.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETA VULGARIS; SOURCE 3 ORGANISM_COMMON: BEET; SOURCE 4 ORGANISM_TAXID: 161934; SOURCE 5 STRAIN: CV. ABEND; SOURCE 6 OTHER_DETAILS: SEEDS KEYWDS ALPHA-GLUCOSIDASE, GLYCOSIDE HYDROLASE FAMILY 31, (BETA/ALPHA)8- KEYWDS 2 BARREL, HYDROLASE, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR T.TAGAMI,K.YAMASHITA,M.OKUYAMA,H.MORI,M.YAO,A.KIMURA REVDAT 5 29-JUL-20 3W38 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 30-JUL-14 3W38 1 REMARK REVDAT 3 17-JUL-13 3W38 1 JRNL REVDAT 2 12-JUN-13 3W38 1 JRNL REVDAT 1 29-MAY-13 3W38 0 JRNL AUTH T.TAGAMI,K.YAMASHITA,M.OKUYAMA,H.MORI,M.YAO,A.KIMURA JRNL TITL MOLECULAR BASIS FOR THE RECOGNITION OF LONG-CHAIN SUBSTRATES JRNL TITL 2 BY PLANT & ALPHA-GLUCOSIDASE JRNL REF J.BIOL.CHEM. V. 288 19296 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23687304 JRNL DOI 10.1074/JBC.M113.465211 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1295 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.77000 REMARK 3 B22 (A**2) : -2.40000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.291 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6840 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4598 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9328 ; 1.765 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11118 ; 3.175 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 823 ; 6.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;34.894 ;23.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1047 ;13.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;16.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7600 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1491 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3W38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000095829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 43.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM AMMONIUM SULFATE, 50MM SODIUM REMARK 280 ACETATE BUFFER, 18% PEG MONOMETHYLETHER 2000, PH 4.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.76700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.82550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.73150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.82550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.76700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.73150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 TYR A 9 REMARK 465 ILE A 10 REMARK 465 CYS A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 LEU A 22 REMARK 465 CYS A 23 REMARK 465 MET A 24 REMARK 465 VAL A 25 REMARK 465 VAL A 26 REMARK 465 GLU A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ASN A 36 REMARK 465 GLN A 37 REMARK 465 GLY A 38 REMARK 465 SER A 119 REMARK 465 PRO A 120 REMARK 465 PRO A 121 REMARK 465 PRO A 122 REMARK 465 LEU A 123 REMARK 465 SER A 124 REMARK 465 SER A 125 REMARK 465 LEU A 126 REMARK 465 GLN A 127 REMARK 465 HIS A 128 REMARK 465 LEU A 129 REMARK 465 PRO A 130 REMARK 465 LYS A 131 REMARK 465 PRO A 132 REMARK 465 ILE A 133 REMARK 465 PRO A 134 REMARK 465 GLN A 135 REMARK 465 ASN A 136 REMARK 465 GLN A 137 REMARK 465 GLU A 859 REMARK 465 TYR A 860 REMARK 465 THR A 861 REMARK 465 VAL A 862 REMARK 465 GLN A 863 REMARK 465 LYS A 864 REMARK 465 ASP A 865 REMARK 465 ALA A 866 REMARK 465 GLY A 867 REMARK 465 ALA A 868 REMARK 465 ILE A 869 REMARK 465 LYS A 870 REMARK 465 ILE A 871 REMARK 465 LYS A 872 REMARK 465 GLY A 873 REMARK 465 LEU A 874 REMARK 465 GLY A 875 REMARK 465 LEU A 876 REMARK 465 ARG A 877 REMARK 465 THR A 878 REMARK 465 SER A 879 REMARK 465 SER A 880 REMARK 465 HIS A 881 REMARK 465 ASN A 882 REMARK 465 GLN A 883 REMARK 465 GLY A 884 REMARK 465 GLY A 910 REMARK 465 ALA A 911 REMARK 465 THR A 912 REMARK 465 ARG A 913 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 796 OE1 GLU A 800 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 -160.91 71.10 REMARK 500 SER A 55 -175.51 77.76 REMARK 500 ALA A 176 37.91 -96.96 REMARK 500 ASN A 223 67.14 64.09 REMARK 500 TRP A 229 115.06 -164.62 REMARK 500 ASP A 239 -33.63 80.00 REMARK 500 LEU A 242 -149.59 -108.16 REMARK 500 PRO A 247 48.00 -81.01 REMARK 500 TYR A 515 133.26 -38.06 REMARK 500 MET A 591 72.87 -116.82 REMARK 500 CYS A 599 -8.48 81.22 REMARK 500 GLU A 603 151.21 81.91 REMARK 500 ASN A 728 97.48 -165.72 REMARK 500 ARG A 840 33.71 -95.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W37 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARBOSE (AC4) REMARK 900 RELATED ID: 3WEL RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOTRIOSE (AC5) REMARK 900 RELATED ID: 3WEM RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOTETRAOSE (AC6) REMARK 900 RELATED ID: 3WEN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOPENTAOSE (AC7) REMARK 900 RELATED ID: 3WEO RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOHEXAOSE (AC8) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE GENEBANK ACCESSION NUMBER IS AB699590 FOR REMARK 999 THIS SEQUENCE. DBREF 3W38 A 1 913 PDB 3W38 3W38 1 913 SEQRES 1 A 913 MET GLU ARG SER LYS LEU PRO ARG TYR ILE CYS ALA THR SEQRES 2 A 913 LEU ALA VAL VAL LEU PRO LEU VAL LEU CYS MET VAL VAL SEQRES 3 A 913 GLU GLY ALA THR THR SER LYS ASN ASP ASN GLN GLY GLU SEQRES 4 A 913 ALA ILE GLY TYR GLY TYR GLN VAL LYS ASN ALA LYS VAL SEQRES 5 A 913 ASP ASN SER THR GLY LYS SER LEU THR ALA LEU LEU GLN SEQRES 6 A 913 LEU ILE ARG ASN SER PRO VAL TYR GLY PRO ASP ILE GLN SEQRES 7 A 913 PHE LEU SER PHE THR ALA SER PHE GLU GLU ASP ASP THR SEQRES 8 A 913 LEU ARG ILE ARG ILE THR ASP ALA ASN ASN ARG ARG TRP SEQRES 9 A 913 GLU ILE PRO ASN GLU VAL LEU PRO ARG PRO PRO PRO PRO SEQRES 10 A 913 PRO SER PRO PRO PRO LEU SER SER LEU GLN HIS LEU PRO SEQRES 11 A 913 LYS PRO ILE PRO GLN ASN GLN PRO THR THR THR VAL LEU SEQRES 12 A 913 SER HIS PRO HIS SER ASP LEU VAL PHE THR LEU PHE HIS SEQRES 13 A 913 THR THR PRO PHE GLY PHE THR ILE TYR ARG LYS SER THR SEQRES 14 A 913 HIS ASP VAL LEU PHE ASP ALA THR PRO ILE PRO SER ASN SEQRES 15 A 913 PRO THR THR PHE LEU ILE TYR LYS ASP GLN TYR LEU GLN SEQRES 16 A 913 LEU SER SER SER LEU PRO ALA GLN GLN ALA HIS LEU TYR SEQRES 17 A 913 GLY LEU GLY GLU HIS THR LYS PRO THR PHE GLN LEU ALA SEQRES 18 A 913 HIS ASN GLN ILE LEU THR LEU TRP ASN ALA ASP ILE ALA SEQRES 19 A 913 SER PHE ASN ARG ASP LEU ASN LEU TYR GLY SER HIS PRO SEQRES 20 A 913 PHE TYR MET ASP VAL ARG SER SER PRO MET VAL GLY SER SEQRES 21 A 913 THR HIS GLY VAL PHE LEU LEU ASN SER ASN GLY MET ASP SEQRES 22 A 913 VAL GLU TYR THR GLY ASP ARG ILE THR TYR LYS VAL ILE SEQRES 23 A 913 GLY GLY ILE ILE ASP LEU TYR ILE PHE ALA GLY ARG THR SEQRES 24 A 913 PRO GLU MET VAL LEU ASP GLN TYR THR LYS LEU ILE GLY SEQRES 25 A 913 ARG PRO ALA PRO MET PRO TYR TRP ALA PHE GLY PHE HIS SEQRES 26 A 913 GLN CYS ARG TRP GLY TYR ARG ASP VAL ASN GLU ILE GLU SEQRES 27 A 913 THR VAL VAL ASP LYS TYR ALA GLU ALA ARG ILE PRO LEU SEQRES 28 A 913 GLU VAL MET TRP THR ASP ILE ASP TYR MET ASP ALA PHE SEQRES 29 A 913 LYS ASP PHE THR LEU ASP PRO VAL HIS PHE PRO LEU ASP SEQRES 30 A 913 LYS MET GLN GLN PHE VAL THR LYS LEU HIS ARG ASN GLY SEQRES 31 A 913 GLN ARG TYR VAL PRO ILE LEU ASP PRO GLY ILE ASN THR SEQRES 32 A 913 ASN LYS SER TYR GLY THR PHE ILE ARG GLY MET GLN SER SEQRES 33 A 913 ASN VAL PHE ILE LYS ARG ASP GLY ASN PRO TYR LEU GLY SEQRES 34 A 913 SER VAL TRP PRO GLY PRO VAL TYR TYR PRO ASP PHE LEU SEQRES 35 A 913 ASP PRO ALA ALA ARG SER PHE TRP VAL ASP GLU ILE LYS SEQRES 36 A 913 ARG PHE ARG ASP ILE LEU PRO ILE ASP GLY ILE TRP ILE SEQRES 37 A 913 ASP MET ASN GLU ALA SER ASN PHE ILE THR SER ALA PRO SEQRES 38 A 913 THR PRO GLY SER THR LEU ASP ASN PRO PRO TYR LYS ILE SEQRES 39 A 913 ASN ASN SER GLY GLY ARG VAL PRO ILE ASN SER LYS THR SEQRES 40 A 913 ILE PRO ALA THR ALA MET HIS TYR GLY ASN VAL THR GLU SEQRES 41 A 913 TYR ASN ALA HIS ASN LEU TYR GLY PHE LEU GLU SER GLN SEQRES 42 A 913 ALA THR ARG GLU ALA LEU VAL ARG THR SER ASN GLU ARG SEQRES 43 A 913 PRO PHE LEU LEU SER ARG SER THR PHE ALA GLY SER GLY SEQRES 44 A 913 LYS TYR THR ALA HIS TRP THR GLY ASP ASN ALA ALA ARG SEQRES 45 A 913 TRP ASP ASP LEU GLN TYR SER ILE PRO THR MET LEU ASN SEQRES 46 A 913 PHE GLY LEU PHE GLY MET PRO MET ILE GLY ALA ASP ILE SEQRES 47 A 913 CYS GLY PHE ALA GLU SER THR THR GLU GLU LEU CYS ARG SEQRES 48 A 913 ARG TRP ILE GLN LEU GLY ALA PHE TYR PRO PHE SER ARG SEQRES 49 A 913 ASP HIS SER ALA ARG ASP THR THR HIS GLN GLU LEU TYR SEQRES 50 A 913 LEU TRP GLU SER VAL ALA ALA SER ALA ARG THR VAL LEU SEQRES 51 A 913 GLY LEU ARG TYR GLN LEU LEU PRO TYR TYR TYR THR LEU SEQRES 52 A 913 MET TYR ASP ALA ASN LEU ARG GLY ILE PRO ILE ALA ARG SEQRES 53 A 913 PRO LEU PHE PHE THR PHE PRO ASP ASP VAL ALA THR TYR SEQRES 54 A 913 GLY ILE SER SER GLN PHE LEU ILE GLY ARG GLY ILE MET SEQRES 55 A 913 VAL SER PRO VAL LEU GLN PRO GLY ALA VAL SER VAL ASN SEQRES 56 A 913 ALA TYR PHE PRO ARG GLY ASN TRP PHE SER LEU PHE ASN SEQRES 57 A 913 TYR THR SER SER VAL SER VAL SER ALA GLY THR TYR VAL SEQRES 58 A 913 SER LEU SER ALA PRO PRO ASP HIS ILE ASN VAL HIS ILE SEQRES 59 A 913 HIS GLU GLY ASN ILE VAL ALA MET GLN GLY GLU ALA MET SEQRES 60 A 913 THR THR GLN ALA ALA ARG SER THR PRO PHE HIS LEU LEU SEQRES 61 A 913 VAL VAL MET SER ASP HIS VAL ALA SER THR GLY GLU LEU SEQRES 62 A 913 PHE LEU ASP ASN GLY ILE GLU MET ASP ILE GLY GLY PRO SEQRES 63 A 913 GLY GLY LYS TRP THR LEU VAL ARG PHE PHE ALA GLU SER SEQRES 64 A 913 GLY ILE ASN ASN LEU THR ILE SER SER GLU VAL VAL ASN SEQRES 65 A 913 ARG GLY TYR ALA MET SER GLN ARG TRP VAL MET ASP LYS SEQRES 66 A 913 ILE THR ILE LEU GLY LEU LYS ARG ARG VAL ARG ILE LYS SEQRES 67 A 913 GLU TYR THR VAL GLN LYS ASP ALA GLY ALA ILE LYS ILE SEQRES 68 A 913 LYS GLY LEU GLY LEU ARG THR SER SER HIS ASN GLN GLY SEQRES 69 A 913 GLY PHE VAL VAL SER VAL ILE SER ASP LEU ARG GLN LEU SEQRES 70 A 913 VAL GLY GLN ALA PHE LYS LEU GLU LEU GLU PHE GLU GLY SEQRES 71 A 913 ALA THR ARG MODRES 3W38 ASN A 404 ASN GLYCOSYLATION SITE MODRES 3W38 ASN A 728 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET FUC B 2 10 HET NAG B 3 14 HET NAG A1004 14 HET SO4 A1005 5 HET SO4 A1006 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *35(H2 O) HELIX 1 1 ASN A 182 PHE A 186 5 5 HELIX 2 2 THR A 299 GLY A 312 1 14 HELIX 3 3 PRO A 318 GLY A 323 5 6 HELIX 4 4 ASP A 333 ALA A 347 1 15 HELIX 5 5 ASP A 357 MET A 361 5 5 HELIX 6 6 PRO A 375 ASN A 389 1 15 HELIX 7 7 TYR A 407 SER A 416 1 10 HELIX 8 8 ASP A 443 LEU A 461 1 19 HELIX 9 9 ASN A 495 GLY A 499 5 5 HELIX 10 10 GLU A 520 HIS A 524 1 5 HELIX 11 11 LEU A 526 ARG A 541 1 16 HELIX 12 12 GLY A 557 TYR A 561 5 5 HELIX 13 13 ARG A 572 PHE A 589 1 18 HELIX 14 14 THR A 606 ALA A 618 1 13 HELIX 15 15 TRP A 639 LEU A 656 1 18 HELIX 16 16 LEU A 656 GLY A 671 1 16 HELIX 17 17 PRO A 677 PHE A 682 1 6 HELIX 18 18 ASP A 685 TYR A 689 5 5 HELIX 19 19 THR A 768 SER A 774 1 7 HELIX 20 20 ASN A 832 MET A 837 1 6 SHEET 1 A 8 TYR A 45 VAL A 52 0 SHEET 2 A 8 SER A 59 LEU A 66 -1 O THR A 61 N LYS A 51 SHEET 3 A 8 PHE A 79 GLU A 88 -1 O LEU A 80 N LEU A 64 SHEET 4 A 8 THR A 91 ASP A 98 -1 O ARG A 93 N SER A 85 SHEET 5 A 8 ILE A 290 PHE A 295 -1 O LEU A 292 N ILE A 94 SHEET 6 A 8 SER A 260 LEU A 266 -1 N PHE A 265 O TYR A 293 SHEET 7 A 8 ASN A 241 ARG A 253 -1 N ASP A 251 O HIS A 262 SHEET 8 A 8 ALA A 205 HIS A 213 -1 N LEU A 210 O PHE A 248 SHEET 1 B 4 THR A 140 LEU A 143 0 SHEET 2 B 4 LEU A 150 PHE A 155 -1 O PHE A 152 N LEU A 143 SHEET 3 B 4 GLY A 161 ARG A 166 -1 O GLY A 161 N PHE A 155 SHEET 4 B 4 VAL A 172 ALA A 176 -1 O PHE A 174 N ILE A 164 SHEET 1 C 5 ILE A 188 LYS A 190 0 SHEET 2 C 5 TYR A 193 SER A 199 -1 O GLN A 195 N ILE A 188 SHEET 3 C 5 ARG A 280 VAL A 285 -1 O VAL A 285 N LEU A 194 SHEET 4 C 5 MET A 272 TYR A 276 -1 N ASP A 273 O LYS A 284 SHEET 5 C 5 GLN A 224 LEU A 228 -1 N LEU A 226 O VAL A 274 SHEET 1 D 8 ILE A 594 GLY A 595 0 SHEET 2 D 8 ALA A 563 TRP A 565 1 N HIS A 564 O GLY A 595 SHEET 3 D 8 LEU A 549 SER A 551 1 N SER A 551 O ALA A 563 SHEET 4 D 8 ILE A 466 ILE A 468 1 N ILE A 468 O LEU A 550 SHEET 5 D 8 ARG A 392 LEU A 397 1 N LEU A 397 O TRP A 467 SHEET 6 D 8 VAL A 353 THR A 356 1 N MET A 354 O ARG A 392 SHEET 7 D 8 HIS A 325 GLN A 326 1 N GLN A 326 O VAL A 353 SHEET 8 D 8 ARG A 624 ASP A 625 1 O ASP A 625 N HIS A 325 SHEET 1 E 3 ILE A 401 ASN A 402 0 SHEET 2 E 3 GLY A 434 TYR A 437 -1 O TYR A 437 N ILE A 401 SHEET 3 E 3 LEU A 428 VAL A 431 -1 N VAL A 431 O GLY A 434 SHEET 1 F 2 LYS A 421 ARG A 422 0 SHEET 2 F 2 ASN A 425 PRO A 426 -1 O ASN A 425 N ARG A 422 SHEET 1 G 2 MET A 513 HIS A 514 0 SHEET 2 G 2 VAL A 518 THR A 519 -1 O VAL A 518 N HIS A 514 SHEET 1 H 6 ALA A 675 ARG A 676 0 SHEET 2 H 6 PHE A 695 ILE A 697 -1 O LEU A 696 N ARG A 676 SHEET 3 H 6 ILE A 701 SER A 704 -1 O VAL A 703 N PHE A 695 SHEET 4 H 6 ASN A 751 HIS A 755 -1 O HIS A 753 N MET A 702 SHEET 5 H 6 GLY A 721 SER A 725 -1 N PHE A 724 O ILE A 754 SHEET 6 H 6 SER A 732 VAL A 735 -1 O VAL A 733 N TRP A 723 SHEET 1 I 2 SER A 713 PHE A 718 0 SHEET 2 I 2 THR A 739 SER A 744 -1 O VAL A 741 N ALA A 716 SHEET 1 J 9 VAL A 855 ILE A 857 0 SHEET 2 J 9 LYS A 903 PHE A 908 -1 O GLU A 907 N ARG A 856 SHEET 3 J 9 ASN A 823 VAL A 831 -1 N ILE A 826 O LEU A 904 SHEET 4 J 9 TRP A 810 SER A 819 -1 N ARG A 814 O GLU A 829 SHEET 5 J 9 SER A 789 ASP A 796 -1 N LEU A 793 O VAL A 813 SHEET 6 J 9 ASN A 758 MET A 762 1 N ILE A 759 O THR A 790 SHEET 7 J 9 PHE A 777 VAL A 782 -1 O HIS A 778 N MET A 762 SHEET 8 J 9 VAL A 842 LEU A 851 1 O VAL A 842 N PHE A 777 SHEET 9 J 9 VAL A 887 LEU A 897 -1 O GLN A 896 N MET A 843 SSBOND 1 CYS A 599 CYS A 610 1555 1555 2.06 LINK ND2 ASN A 404 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 728 C1 NAG A1004 1555 1555 1.46 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 3 1555 1555 1.43 CISPEP 1 THR A 158 PRO A 159 0 2.42 CISPEP 2 GLY A 211 GLU A 212 0 2.64 CISPEP 3 SER A 255 PRO A 256 0 6.85 CISPEP 4 GLY A 297 ARG A 298 0 6.84 CISPEP 5 GLU A 472 ALA A 473 0 8.61 CRYST1 83.534 95.463 107.651 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009289 0.00000 MASTER 390 0 6 20 49 0 0 6 0 0 0 71 END