HEADER TRANSFERASE 03-OCT-12 3VYW TITLE CRYSTAL STRUCTURE OF MNMC2 FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MNMC2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: AQ_1980; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11B KEYWDS TRNA WOBBLE URIDINE, MODIFICATION ENZYME, GENETIC CODE, 5- KEYWDS 2 METHYLAMINOMETHYL-2-THIOURIDINE, METHYLTRANSFERASE, 2-CODON SETS, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SHIBATA,Y.BESSHO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 2 07-NOV-12 3VYW 1 JRNL REVDAT 1 17-OCT-12 3VYW 0 SPRSDE 17-OCT-12 3VYW 2E58 JRNL AUTH A.KITAMURA,M.NISHIMOTO,T.SENGOKU,R.SHIBATA,G.JAGER, JRNL AUTH 2 G.R.BJORK,H.GROSJEAN,S.YOKOYAMA,Y.BESSHO JRNL TITL CHARACTERIZATION AND STRUCTURE OF THE AQUIFEX AEOLICUS JRNL TITL 2 PROTEIN DUF752: A BACTERIAL TRNA-METHYLTRANSFERASE (MNMC2) JRNL TITL 3 FUNCTIONING WITHOUT THE USUALLY FUSED OXIDASE DOMAIN (MNMC1) JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X JRNL PMID 23091054 JRNL DOI 10.1074/JBC.M112.409300 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 43644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10421 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14045 ; 2.123 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1214 ; 6.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 475 ;38.110 ;23.221 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1971 ;25.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 87 ;23.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1536 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7701 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB095673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05; 12-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL41XU; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923; 0.97923,0.97952,0.97500 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 45.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM ACETATE, BENZAMIDINE, REMARK 280 PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.79050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 249 REMARK 465 ARG A 250 REMARK 465 LYS A 251 REMARK 465 ARG A 308 REMARK 465 MSE B 1 REMARK 465 SER B 307 REMARK 465 ARG B 308 REMARK 465 MSE C 1 REMARK 465 SER C 307 REMARK 465 ARG C 308 REMARK 465 MSE D 1 REMARK 465 ARG D 308 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RSGI-AAE001001980.1 RELATED DB: TARGETTRACK DBREF 3VYW A 1 308 UNP O67789 O67789_AQUAE 1 308 DBREF 3VYW B 1 308 UNP O67789 O67789_AQUAE 1 308 DBREF 3VYW C 1 308 UNP O67789 O67789_AQUAE 1 308 DBREF 3VYW D 1 308 UNP O67789 O67789_AQUAE 1 308 SEQRES 1 A 308 MSE LYS ARG GLU GLU TYR LEU LYS ASN TYR LEU GLU SER SEQRES 2 A 308 TYR LEU ARG LYS LYS GLU VAL SER LEU THR GLU GLU GLU SEQRES 3 A 308 PHE ASN VAL ILE LEU ARG GLU PHE LEU ARG PHE ALA TYR SEQRES 4 A 308 ASN PRO GLU GLU SER GLY GLN GLU ILE ALA ASP THR ALA SEQRES 5 A 308 ASP GLY SER LYS THR LEU ILE HIS LYS THR TYR GLY GLU SEQRES 6 A 308 PRO TYR HIS SER GLN THR ALA GLY ALA ILE ARG GLU SER SEQRES 7 A 308 LEU TYR LYS PHE VAL ARG PRO SER ARG ILE LEU GLU LYS SEQRES 8 A 308 ALA LYS GLU ARG LYS VAL ILE ARG ILE LEU ASP VAL GLY SEQRES 9 A 308 PHE GLY LEU GLY TYR ASN LEU ALA VAL ALA LEU LYS HIS SEQRES 10 A 308 LEU TRP GLU VAL ASN PRO LYS LEU ARG VAL GLU ILE ILE SEQRES 11 A 308 SER PHE GLU LYS GLU LEU LEU LYS GLU PHE PRO ILE LEU SEQRES 12 A 308 PRO GLU PRO TYR ARG GLU ILE HIS GLU PHE LEU LEU GLU SEQRES 13 A 308 ARG VAL PRO GLU TYR GLU GLY GLU ARG LEU SER LEU LYS SEQRES 14 A 308 VAL LEU LEU GLY ASP ALA ARG LYS ARG ILE LYS GLU VAL SEQRES 15 A 308 GLU ASN PHE LYS ALA ASP ALA VAL PHE HIS ASP ALA PHE SEQRES 16 A 308 SER PRO TYR LYS ASN PRO GLU LEU TRP THR LEU ASP PHE SEQRES 17 A 308 LEU SER LEU ILE LYS GLU ARG ILE ASP GLU LYS GLY TYR SEQRES 18 A 308 TRP VAL SER TYR SER SER SER LEU SER VAL ARG LYS SER SEQRES 19 A 308 LEU LEU THR LEU GLY PHE LYS VAL GLY SER SER ARG GLU SEQRES 20 A 308 ILE GLY ARG LYS ARG LYS GLY THR VAL ALA SER LEU LYS SEQRES 21 A 308 ALA PRO VAL PRO PRO MSE GLU GLU ASN GLU VAL ARG LYS SEQRES 22 A 308 LEU VAL LEU SER PRO PHE ALA VAL PRO MSE ARG ASP GLU SEQRES 23 A 308 LYS LEU ASP LYS GLU PRO LEU GLU ILE LEU ILE ASP TYR SEQRES 24 A 308 LEU LEU LYS VAL TYR LYS ILE SER ARG SEQRES 1 B 308 MSE LYS ARG GLU GLU TYR LEU LYS ASN TYR LEU GLU SER SEQRES 2 B 308 TYR LEU ARG LYS LYS GLU VAL SER LEU THR GLU GLU GLU SEQRES 3 B 308 PHE ASN VAL ILE LEU ARG GLU PHE LEU ARG PHE ALA TYR SEQRES 4 B 308 ASN PRO GLU GLU SER GLY GLN GLU ILE ALA ASP THR ALA SEQRES 5 B 308 ASP GLY SER LYS THR LEU ILE HIS LYS THR TYR GLY GLU SEQRES 6 B 308 PRO TYR HIS SER GLN THR ALA GLY ALA ILE ARG GLU SER SEQRES 7 B 308 LEU TYR LYS PHE VAL ARG PRO SER ARG ILE LEU GLU LYS SEQRES 8 B 308 ALA LYS GLU ARG LYS VAL ILE ARG ILE LEU ASP VAL GLY SEQRES 9 B 308 PHE GLY LEU GLY TYR ASN LEU ALA VAL ALA LEU LYS HIS SEQRES 10 B 308 LEU TRP GLU VAL ASN PRO LYS LEU ARG VAL GLU ILE ILE SEQRES 11 B 308 SER PHE GLU LYS GLU LEU LEU LYS GLU PHE PRO ILE LEU SEQRES 12 B 308 PRO GLU PRO TYR ARG GLU ILE HIS GLU PHE LEU LEU GLU SEQRES 13 B 308 ARG VAL PRO GLU TYR GLU GLY GLU ARG LEU SER LEU LYS SEQRES 14 B 308 VAL LEU LEU GLY ASP ALA ARG LYS ARG ILE LYS GLU VAL SEQRES 15 B 308 GLU ASN PHE LYS ALA ASP ALA VAL PHE HIS ASP ALA PHE SEQRES 16 B 308 SER PRO TYR LYS ASN PRO GLU LEU TRP THR LEU ASP PHE SEQRES 17 B 308 LEU SER LEU ILE LYS GLU ARG ILE ASP GLU LYS GLY TYR SEQRES 18 B 308 TRP VAL SER TYR SER SER SER LEU SER VAL ARG LYS SER SEQRES 19 B 308 LEU LEU THR LEU GLY PHE LYS VAL GLY SER SER ARG GLU SEQRES 20 B 308 ILE GLY ARG LYS ARG LYS GLY THR VAL ALA SER LEU LYS SEQRES 21 B 308 ALA PRO VAL PRO PRO MSE GLU GLU ASN GLU VAL ARG LYS SEQRES 22 B 308 LEU VAL LEU SER PRO PHE ALA VAL PRO MSE ARG ASP GLU SEQRES 23 B 308 LYS LEU ASP LYS GLU PRO LEU GLU ILE LEU ILE ASP TYR SEQRES 24 B 308 LEU LEU LYS VAL TYR LYS ILE SER ARG SEQRES 1 C 308 MSE LYS ARG GLU GLU TYR LEU LYS ASN TYR LEU GLU SER SEQRES 2 C 308 TYR LEU ARG LYS LYS GLU VAL SER LEU THR GLU GLU GLU SEQRES 3 C 308 PHE ASN VAL ILE LEU ARG GLU PHE LEU ARG PHE ALA TYR SEQRES 4 C 308 ASN PRO GLU GLU SER GLY GLN GLU ILE ALA ASP THR ALA SEQRES 5 C 308 ASP GLY SER LYS THR LEU ILE HIS LYS THR TYR GLY GLU SEQRES 6 C 308 PRO TYR HIS SER GLN THR ALA GLY ALA ILE ARG GLU SER SEQRES 7 C 308 LEU TYR LYS PHE VAL ARG PRO SER ARG ILE LEU GLU LYS SEQRES 8 C 308 ALA LYS GLU ARG LYS VAL ILE ARG ILE LEU ASP VAL GLY SEQRES 9 C 308 PHE GLY LEU GLY TYR ASN LEU ALA VAL ALA LEU LYS HIS SEQRES 10 C 308 LEU TRP GLU VAL ASN PRO LYS LEU ARG VAL GLU ILE ILE SEQRES 11 C 308 SER PHE GLU LYS GLU LEU LEU LYS GLU PHE PRO ILE LEU SEQRES 12 C 308 PRO GLU PRO TYR ARG GLU ILE HIS GLU PHE LEU LEU GLU SEQRES 13 C 308 ARG VAL PRO GLU TYR GLU GLY GLU ARG LEU SER LEU LYS SEQRES 14 C 308 VAL LEU LEU GLY ASP ALA ARG LYS ARG ILE LYS GLU VAL SEQRES 15 C 308 GLU ASN PHE LYS ALA ASP ALA VAL PHE HIS ASP ALA PHE SEQRES 16 C 308 SER PRO TYR LYS ASN PRO GLU LEU TRP THR LEU ASP PHE SEQRES 17 C 308 LEU SER LEU ILE LYS GLU ARG ILE ASP GLU LYS GLY TYR SEQRES 18 C 308 TRP VAL SER TYR SER SER SER LEU SER VAL ARG LYS SER SEQRES 19 C 308 LEU LEU THR LEU GLY PHE LYS VAL GLY SER SER ARG GLU SEQRES 20 C 308 ILE GLY ARG LYS ARG LYS GLY THR VAL ALA SER LEU LYS SEQRES 21 C 308 ALA PRO VAL PRO PRO MSE GLU GLU ASN GLU VAL ARG LYS SEQRES 22 C 308 LEU VAL LEU SER PRO PHE ALA VAL PRO MSE ARG ASP GLU SEQRES 23 C 308 LYS LEU ASP LYS GLU PRO LEU GLU ILE LEU ILE ASP TYR SEQRES 24 C 308 LEU LEU LYS VAL TYR LYS ILE SER ARG SEQRES 1 D 308 MSE LYS ARG GLU GLU TYR LEU LYS ASN TYR LEU GLU SER SEQRES 2 D 308 TYR LEU ARG LYS LYS GLU VAL SER LEU THR GLU GLU GLU SEQRES 3 D 308 PHE ASN VAL ILE LEU ARG GLU PHE LEU ARG PHE ALA TYR SEQRES 4 D 308 ASN PRO GLU GLU SER GLY GLN GLU ILE ALA ASP THR ALA SEQRES 5 D 308 ASP GLY SER LYS THR LEU ILE HIS LYS THR TYR GLY GLU SEQRES 6 D 308 PRO TYR HIS SER GLN THR ALA GLY ALA ILE ARG GLU SER SEQRES 7 D 308 LEU TYR LYS PHE VAL ARG PRO SER ARG ILE LEU GLU LYS SEQRES 8 D 308 ALA LYS GLU ARG LYS VAL ILE ARG ILE LEU ASP VAL GLY SEQRES 9 D 308 PHE GLY LEU GLY TYR ASN LEU ALA VAL ALA LEU LYS HIS SEQRES 10 D 308 LEU TRP GLU VAL ASN PRO LYS LEU ARG VAL GLU ILE ILE SEQRES 11 D 308 SER PHE GLU LYS GLU LEU LEU LYS GLU PHE PRO ILE LEU SEQRES 12 D 308 PRO GLU PRO TYR ARG GLU ILE HIS GLU PHE LEU LEU GLU SEQRES 13 D 308 ARG VAL PRO GLU TYR GLU GLY GLU ARG LEU SER LEU LYS SEQRES 14 D 308 VAL LEU LEU GLY ASP ALA ARG LYS ARG ILE LYS GLU VAL SEQRES 15 D 308 GLU ASN PHE LYS ALA ASP ALA VAL PHE HIS ASP ALA PHE SEQRES 16 D 308 SER PRO TYR LYS ASN PRO GLU LEU TRP THR LEU ASP PHE SEQRES 17 D 308 LEU SER LEU ILE LYS GLU ARG ILE ASP GLU LYS GLY TYR SEQRES 18 D 308 TRP VAL SER TYR SER SER SER LEU SER VAL ARG LYS SER SEQRES 19 D 308 LEU LEU THR LEU GLY PHE LYS VAL GLY SER SER ARG GLU SEQRES 20 D 308 ILE GLY ARG LYS ARG LYS GLY THR VAL ALA SER LEU LYS SEQRES 21 D 308 ALA PRO VAL PRO PRO MSE GLU GLU ASN GLU VAL ARG LYS SEQRES 22 D 308 LEU VAL LEU SER PRO PHE ALA VAL PRO MSE ARG ASP GLU SEQRES 23 D 308 LYS LEU ASP LYS GLU PRO LEU GLU ILE LEU ILE ASP TYR SEQRES 24 D 308 LEU LEU LYS VAL TYR LYS ILE SER ARG MODRES 3VYW MSE A 266 MET SELENOMETHIONINE MODRES 3VYW MSE A 283 MET SELENOMETHIONINE MODRES 3VYW MSE B 266 MET SELENOMETHIONINE MODRES 3VYW MSE B 283 MET SELENOMETHIONINE MODRES 3VYW MSE C 266 MET SELENOMETHIONINE MODRES 3VYW MSE C 283 MET SELENOMETHIONINE MODRES 3VYW MSE D 266 MET SELENOMETHIONINE MODRES 3VYW MSE D 283 MET SELENOMETHIONINE HET MSE A 266 8 HET MSE A 283 8 HET MSE B 266 8 HET MSE B 283 8 HET MSE C 266 8 HET MSE C 283 8 HET MSE D 266 8 HET MSE D 283 8 HET SAM A 501 27 HET SAM B 401 27 HET BEN B 402 9 HET SAM C 401 27 HET BEN C 402 9 HET SAM D 401 27 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BEN BENZAMIDINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 SAM 4(C15 H22 N6 O5 S) FORMUL 7 BEN 2(C7 H8 N2) FORMUL 11 HOH *146(H2 O) HELIX 1 1 LYS A 2 GLU A 19 1 18 HELIX 2 2 THR A 23 ALA A 38 1 16 HELIX 3 3 GLY A 73 PHE A 82 1 10 HELIX 4 4 PHE A 82 ARG A 87 1 6 HELIX 5 5 ARG A 87 ARG A 95 1 9 HELIX 6 6 GLY A 108 ASN A 122 1 15 HELIX 7 7 TYR A 147 VAL A 158 1 12 HELIX 8 8 ASP A 174 ILE A 179 1 6 HELIX 9 9 LYS A 180 VAL A 182 5 3 HELIX 10 10 ASN A 200 TRP A 204 5 5 HELIX 11 11 THR A 205 GLU A 214 1 10 HELIX 12 12 SER A 228 LEU A 238 1 11 HELIX 13 13 GLU A 267 SER A 277 1 11 HELIX 14 14 GLU A 291 TYR A 304 1 14 HELIX 15 15 ARG B 3 LYS B 18 1 16 HELIX 16 16 THR B 23 ALA B 38 1 16 HELIX 17 17 GLY B 73 PHE B 82 1 10 HELIX 18 18 PHE B 82 ARG B 87 1 6 HELIX 19 19 ARG B 87 LYS B 93 1 7 HELIX 20 20 GLY B 108 ASN B 122 1 15 HELIX 21 21 TYR B 147 VAL B 158 1 12 HELIX 22 22 ASP B 174 ILE B 179 1 6 HELIX 23 23 LYS B 180 VAL B 182 5 3 HELIX 24 24 ASN B 200 TRP B 204 5 5 HELIX 25 25 THR B 205 ARG B 215 1 11 HELIX 26 26 SER B 228 LEU B 238 1 11 HELIX 27 27 GLU B 267 SER B 277 1 11 HELIX 28 28 GLU B 291 TYR B 304 1 14 HELIX 29 29 ARG C 3 GLU C 19 1 17 HELIX 30 30 THR C 23 ALA C 38 1 16 HELIX 31 31 GLY C 73 PHE C 82 1 10 HELIX 32 32 PHE C 82 ARG C 87 1 6 HELIX 33 33 ARG C 87 ARG C 95 1 9 HELIX 34 34 GLY C 108 ASN C 122 1 15 HELIX 35 35 TYR C 147 VAL C 158 1 12 HELIX 36 36 ASP C 174 ILE C 179 1 6 HELIX 37 37 LYS C 180 VAL C 182 5 3 HELIX 38 38 ASN C 200 TRP C 204 5 5 HELIX 39 39 THR C 205 ARG C 215 1 11 HELIX 40 40 SER C 228 LEU C 238 1 11 HELIX 41 41 GLU C 267 SER C 277 1 11 HELIX 42 42 GLU C 291 TYR C 304 1 14 HELIX 43 43 ARG D 3 GLU D 19 1 17 HELIX 44 44 THR D 23 ALA D 38 1 16 HELIX 45 45 GLY D 73 PHE D 82 1 10 HELIX 46 46 VAL D 83 SER D 86 5 4 HELIX 47 47 ARG D 87 LYS D 93 1 7 HELIX 48 48 GLY D 108 ASN D 122 1 15 HELIX 49 49 TYR D 147 ARG D 157 1 11 HELIX 50 50 ASP D 174 ILE D 179 1 6 HELIX 51 51 LYS D 180 VAL D 182 5 3 HELIX 52 52 ASN D 200 TRP D 204 5 5 HELIX 53 53 THR D 205 ARG D 215 1 11 HELIX 54 54 SER D 228 LEU D 238 1 11 HELIX 55 55 GLU D 267 SER D 277 1 11 HELIX 56 56 GLU D 291 TYR D 304 1 14 SHEET 1 A 3 GLN A 46 ASP A 50 0 SHEET 2 A 3 LYS A 56 HIS A 60 -1 O ILE A 59 N GLU A 47 SHEET 3 A 3 GLU A 65 PRO A 66 -1 O GLU A 65 N HIS A 60 SHEET 1 B 8 GLU A 160 GLU A 162 0 SHEET 2 B 8 LEU A 166 LEU A 172 -1 O LEU A 168 N TYR A 161 SHEET 3 B 8 ARG A 126 GLU A 133 1 N VAL A 127 O SER A 167 SHEET 4 B 8 VAL A 97 VAL A 103 1 N ASP A 102 O ILE A 130 SHEET 5 B 8 ALA A 187 HIS A 192 1 O ALA A 189 N LEU A 101 SHEET 6 B 8 ILE A 216 SER A 224 1 O ASP A 217 N ALA A 187 SHEET 7 B 8 LYS A 253 SER A 258 -1 O ALA A 257 N TRP A 222 SHEET 8 B 8 LYS A 241 ARG A 246 -1 N SER A 245 O GLY A 254 SHEET 1 C 3 GLN B 46 ASP B 50 0 SHEET 2 C 3 LYS B 56 HIS B 60 -1 O THR B 57 N ALA B 49 SHEET 3 C 3 GLU B 65 PRO B 66 -1 O GLU B 65 N HIS B 60 SHEET 1 D 8 GLU B 160 GLU B 162 0 SHEET 2 D 8 LEU B 166 LEU B 172 -1 O LEU B 168 N TYR B 161 SHEET 3 D 8 ARG B 126 GLU B 133 1 N SER B 131 O LEU B 171 SHEET 4 D 8 VAL B 97 VAL B 103 1 N ILE B 100 O GLU B 128 SHEET 5 D 8 ALA B 187 HIS B 192 1 O PHE B 191 N VAL B 103 SHEET 6 D 8 ILE B 216 SER B 224 1 O TYR B 221 N ASP B 188 SHEET 7 D 8 LYS B 253 SER B 258 -1 O ALA B 257 N TRP B 222 SHEET 8 D 8 LYS B 241 ARG B 246 -1 N LYS B 241 O SER B 258 SHEET 1 E 3 GLN C 46 ASP C 50 0 SHEET 2 E 3 LYS C 56 HIS C 60 -1 O THR C 57 N ALA C 49 SHEET 3 E 3 GLU C 65 PRO C 66 -1 O GLU C 65 N HIS C 60 SHEET 1 F 8 GLU C 160 GLU C 162 0 SHEET 2 F 8 LEU C 166 LEU C 172 -1 O LEU C 168 N TYR C 161 SHEET 3 F 8 ARG C 126 GLU C 133 1 N VAL C 127 O SER C 167 SHEET 4 F 8 VAL C 97 VAL C 103 1 N ASP C 102 O ILE C 130 SHEET 5 F 8 ALA C 187 HIS C 192 1 O PHE C 191 N LEU C 101 SHEET 6 F 8 ILE C 216 SER C 224 1 O ASP C 217 N ALA C 187 SHEET 7 F 8 LYS C 253 SER C 258 -1 O ALA C 257 N TRP C 222 SHEET 8 F 8 LYS C 241 ARG C 246 -1 N LYS C 241 O SER C 258 SHEET 1 G 3 GLN D 46 ALA D 49 0 SHEET 2 G 3 THR D 57 HIS D 60 -1 O ILE D 59 N GLU D 47 SHEET 3 G 3 GLU D 65 PRO D 66 -1 O GLU D 65 N HIS D 60 SHEET 1 H 8 GLU D 160 GLU D 162 0 SHEET 2 H 8 LEU D 166 LEU D 172 -1 O LEU D 168 N TYR D 161 SHEET 3 H 8 ARG D 126 GLU D 133 1 N ILE D 129 O SER D 167 SHEET 4 H 8 VAL D 97 VAL D 103 1 N ILE D 98 O ARG D 126 SHEET 5 H 8 ALA D 187 HIS D 192 1 O PHE D 191 N VAL D 103 SHEET 6 H 8 ILE D 216 SER D 224 1 O ASP D 217 N ALA D 187 SHEET 7 H 8 GLY D 254 SER D 258 -1 O ALA D 257 N TRP D 222 SHEET 8 H 8 LYS D 241 SER D 245 -1 N GLY D 243 O VAL D 256 LINK C PRO A 265 N MSE A 266 1555 1555 1.41 LINK C MSE A 266 N GLU A 267 1555 1555 1.27 LINK C PRO A 282 N MSE A 283 1555 1555 1.25 LINK C MSE A 283 N ARG A 284 1555 1555 1.44 LINK C PRO B 265 N MSE B 266 1555 1555 1.32 LINK C MSE B 266 N GLU B 267 1555 1555 1.26 LINK C PRO B 282 N MSE B 283 1555 1555 1.28 LINK C MSE B 283 N ARG B 284 1555 1555 1.44 LINK C PRO C 265 N MSE C 266 1555 1555 1.30 LINK C MSE C 266 N GLU C 267 1555 1555 1.25 LINK C PRO C 282 N MSE C 283 1555 1555 1.26 LINK C MSE C 283 N ARG C 284 1555 1555 1.26 LINK C PRO D 265 N MSE D 266 1555 1555 1.28 LINK C MSE D 266 N GLU D 267 1555 1555 1.34 LINK C PRO D 282 N MSE D 283 1555 1555 1.27 LINK C MSE D 283 N ARG D 284 1555 1555 1.28 CISPEP 1 GLU A 145 PRO A 146 0 21.02 CISPEP 2 VAL A 158 PRO A 159 0 -5.81 CISPEP 3 GLU B 145 PRO B 146 0 15.88 CISPEP 4 VAL B 158 PRO B 159 0 -3.70 CISPEP 5 GLU C 145 PRO C 146 0 16.22 CISPEP 6 VAL C 158 PRO C 159 0 -7.80 CISPEP 7 VAL D 158 PRO D 159 0 6.22 SITE 1 AC1 19 TYR A 67 HIS A 68 GLY A 104 PHE A 105 SITE 2 AC1 19 GLY A 106 LEU A 107 GLY A 108 TYR A 109 SITE 3 AC1 19 ASN A 110 GLU A 133 LYS A 134 GLY A 173 SITE 4 AC1 19 ASP A 174 ALA A 175 ASP A 193 PHE A 195 SITE 5 AC1 19 ASN A 200 GLU A 202 LEU A 203 SITE 1 AC2 20 TYR B 67 HIS B 68 GLY B 104 PHE B 105 SITE 2 AC2 20 GLY B 106 LEU B 107 GLY B 108 TYR B 109 SITE 3 AC2 20 ASN B 110 GLU B 133 LYS B 134 GLY B 173 SITE 4 AC2 20 ASP B 174 ALA B 175 ASP B 193 PHE B 195 SITE 5 AC2 20 ASN B 200 GLU B 202 LEU B 203 HOH B 518 SITE 1 AC3 3 GLU B 12 LEU B 22 GLU B 24 SITE 1 AC4 21 TYR C 67 HIS C 68 GLY C 104 PHE C 105 SITE 2 AC4 21 GLY C 106 LEU C 107 GLY C 108 TYR C 109 SITE 3 AC4 21 ASN C 110 GLU C 133 LYS C 134 GLY C 173 SITE 4 AC4 21 ASP C 174 ALA C 175 ASP C 193 PHE C 195 SITE 5 AC4 21 ASN C 200 GLU C 202 LEU C 203 HOH C 514 SITE 6 AC4 21 HOH C 524 SITE 1 AC5 3 GLU C 12 GLU C 24 PHE C 27 SITE 1 AC6 21 TYR D 67 HIS D 68 GLY D 104 PHE D 105 SITE 2 AC6 21 GLY D 106 LEU D 107 GLY D 108 TYR D 109 SITE 3 AC6 21 ASN D 110 GLU D 133 LYS D 134 GLY D 173 SITE 4 AC6 21 ASP D 174 ALA D 175 ASP D 193 PHE D 195 SITE 5 AC6 21 ASN D 200 GLU D 202 LEU D 203 HOH D 504 SITE 6 AC6 21 HOH D 505 CRYST1 55.487 107.581 117.711 90.00 102.44 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018022 0.000000 0.003976 0.00000 SCALE2 0.000000 0.009295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008700 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.718633 0.568535 0.400418 1.63527 1 MTRIX2 2 -0.466047 -0.033597 0.884122 31.83657 1 MTRIX3 2 0.516107 -0.821973 0.240820 -24.15404 1 MTRIX1 3 0.996328 0.027091 0.081225 5.18553 1 MTRIX2 3 0.084011 -0.126070 -0.988458 -29.32364 1 MTRIX3 3 -0.016538 0.991651 -0.127883 -20.05104 1 MTRIX1 4 0.688412 -0.485075 0.539251 -21.76697 1 MTRIX2 4 -0.500130 -0.855915 -0.131455 4.18720 1 MTRIX3 4 0.525319 -0.179201 -0.831822 -68.57616 1 MASTER 297 0 14 56 44 0 24 18 0 0 0 96 END