HEADER SUGAR BINDING PROTEIN 10-JUL-12 3VV1 TITLE CRYSTAL STRUCTURE OF CAENORHABDITIS ELEGANS GALECTIN LEC-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LEC-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GALECTIN LEC-6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: LEC-6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN, GALACTOSE-1, 4-FUCOSE BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.MAKYIO,T.TAKEUCHI,M.TAMURA,K.NISHIYAMA,H.TAKAHASHI,H.NATSUGARI, AUTHOR 2 Y.ARATA,K.KASAI,Y.YAMADA,S.WAKATSUKI,R.KATO REVDAT 3 29-JUL-20 3VV1 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 24-JUL-13 3VV1 1 JRNL REVDAT 1 22-MAY-13 3VV1 0 JRNL AUTH H.MAKYIO,T.TAKEUCHI,M.TAMURA,K.NISHIYAMA,H.TAKAHASHI, JRNL AUTH 2 H.NATSUGARI,Y.ARATA,K.KASAI,Y.YAMADA,S.WAKATSUKI,R.KATO JRNL TITL STRUCTURAL BASIS OF PREFERENTIAL BINDING OF JRNL TITL 2 FUCOSE-CONTAINING SACCHARIDE BY THE CAENORHABDITIS ELEGANS JRNL TITL 3 GALECTIN LEC-6 JRNL REF GLYCOBIOLOGY V. 23 797 2013 JRNL REFN ISSN 0959-6658 JRNL PMID 23481096 JRNL DOI 10.1093/GLYCOB/CWT017 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 51775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2310 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3147 ; 1.918 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.982 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;33.728 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;11.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.872 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1816 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2310 ; 5.449 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 104 ;23.573 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2516 ; 9.044 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 146 REMARK 3 RESIDUE RANGE : A 201 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1481 49.2044 10.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: 0.0122 REMARK 3 T33: 0.0263 T12: -0.0060 REMARK 3 T13: 0.0089 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.6011 L22: 1.6826 REMARK 3 L33: 3.0136 L12: -0.3846 REMARK 3 L13: -0.2636 L23: 0.4058 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.0175 S13: 0.0004 REMARK 3 S21: 0.0150 S22: -0.0097 S23: -0.0902 REMARK 3 S31: 0.0284 S32: 0.1225 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 146 REMARK 3 RESIDUE RANGE : B 201 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5580 25.5597 36.6324 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.0284 REMARK 3 T33: 0.0313 T12: 0.0069 REMARK 3 T13: -0.0299 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.7425 L22: 1.2924 REMARK 3 L33: 2.2594 L12: -0.0072 REMARK 3 L13: 0.0731 L23: -0.3726 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0247 S13: -0.0212 REMARK 3 S21: 0.0763 S22: -0.0198 S23: -0.0824 REMARK 3 S31: -0.0388 S32: 0.1229 S33: 0.0133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3VV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000095534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) PEG3350, 100MM HEPES, 200MM REMARK 280 MGCL2, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.06550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.06550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.06550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 203 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 488 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ASP A -12 REMARK 465 TYR A -11 REMARK 465 LYS A -10 REMARK 465 ASP A -9 REMARK 465 ASP A -8 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 LYS A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 MET B -13 REMARK 465 ASP B -12 REMARK 465 TYR B -11 REMARK 465 LYS B -10 REMARK 465 ASP B -9 REMARK 465 ASP B -8 REMARK 465 ASP B -7 REMARK 465 ASP B -6 REMARK 465 LYS B -5 REMARK 465 ALA B -4 REMARK 465 ALA B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 ILE B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 80 CE2 TRP A 80 CD2 0.076 REMARK 500 TRP B 80 CE2 TRP B 80 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 52 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 81 -151.02 -100.97 REMARK 500 GLN B 81 -150.58 -101.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 435 O REMARK 620 2 HOH A 447 O 62.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 308 O REMARK 620 2 HOH B 309 O 93.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 309 O REMARK 620 2 HOH B 317 O 86.8 REMARK 620 N 1 DBREF 3VV1 A 1 146 UNP Q9N384 Q9N384_CAEEL 1 146 DBREF 3VV1 B 1 146 UNP Q9N384 Q9N384_CAEEL 1 146 SEQADV 3VV1 MET A -13 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP A -12 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 TYR A -11 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 LYS A -10 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP A -9 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP A -8 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP A -7 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP A -6 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 LYS A -5 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ALA A -4 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ALA A -3 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ALA A -2 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 GLY A -1 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 SER A 0 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 MET B -13 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP B -12 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 TYR B -11 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 LYS B -10 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP B -9 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP B -8 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP B -7 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ASP B -6 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 LYS B -5 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ALA B -4 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ALA B -3 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 ALA B -2 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 GLY B -1 UNP Q9N384 EXPRESSION TAG SEQADV 3VV1 SER B 0 UNP Q9N384 EXPRESSION TAG SEQRES 1 A 160 MET ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA ALA GLY SEQRES 2 A 160 SER MET ILE GLY GLY GLY ILE GLY ILE SER PHE ARG ASN SEQRES 3 A 160 GLU PHE PHE ASN PRO GLN THR PRO VAL ASN ILE PRO VAL SEQRES 4 A 160 GLN GLY PHE SER ASN GLY ALA ARG LEU ARG LEU VAL LEU SEQRES 5 A 160 LEU PRO THR SER ALA ASP SER ARG PHE HIS ILE ASN LEU SEQRES 6 A 160 ARG THR PRO ASP ASP ILE VAL LEU HIS PHE ASN ALA ARG SEQRES 7 A 160 PHE ASP GLU GLY ALA VAL VAL ASN ASN SER THR SER GLY SEQRES 8 A 160 GLY GLY TRP GLN SER GLU ASP ARG HIS ALA ASN PRO PHE SEQRES 9 A 160 GLN GLN ASN LYS ILE TYR THR LEU GLU PHE VAL SER ASN SEQRES 10 A 160 GLY GLY ILE ILE SER ILE PHE VAL ASN GLY ALA HIS PHE SEQRES 11 A 160 ALA ASP PHE VAL GLU ARG THR PRO SER HIS GLY VAL HIS SEQRES 12 A 160 LEU ILE GLU ILE GLU GLY GLY VAL HIS VAL HIS SER ALA SEQRES 13 A 160 HIS VAL SER HIS SEQRES 1 B 160 MET ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA ALA GLY SEQRES 2 B 160 SER MET ILE GLY GLY GLY ILE GLY ILE SER PHE ARG ASN SEQRES 3 B 160 GLU PHE PHE ASN PRO GLN THR PRO VAL ASN ILE PRO VAL SEQRES 4 B 160 GLN GLY PHE SER ASN GLY ALA ARG LEU ARG LEU VAL LEU SEQRES 5 B 160 LEU PRO THR SER ALA ASP SER ARG PHE HIS ILE ASN LEU SEQRES 6 B 160 ARG THR PRO ASP ASP ILE VAL LEU HIS PHE ASN ALA ARG SEQRES 7 B 160 PHE ASP GLU GLY ALA VAL VAL ASN ASN SER THR SER GLY SEQRES 8 B 160 GLY GLY TRP GLN SER GLU ASP ARG HIS ALA ASN PRO PHE SEQRES 9 B 160 GLN GLN ASN LYS ILE TYR THR LEU GLU PHE VAL SER ASN SEQRES 10 B 160 GLY GLY ILE ILE SER ILE PHE VAL ASN GLY ALA HIS PHE SEQRES 11 B 160 ALA ASP PHE VAL GLU ARG THR PRO SER HIS GLY VAL HIS SEQRES 12 B 160 LEU ILE GLU ILE GLU GLY GLY VAL HIS VAL HIS SER ALA SEQRES 13 B 160 HIS VAL SER HIS HET FUC C 1 11 HET GAL C 2 11 HET FUC D 1 11 HET GAL D 2 11 HET MG A 203 1 HET MG B 203 1 HET MG B 204 1 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM MG MAGNESIUM ION FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *371(H2 O) HELIX 1 1 PRO A 124 VAL A 128 5 5 SHEET 1 A 7 ILE A 8 SER A 9 0 SHEET 2 A 7 VAL B 21 GLN B 26 1 O PRO B 24 N ILE A 8 SHEET 3 A 7 LEU B 130 GLY B 135 -1 O ILE B 131 N ILE B 23 SHEET 4 A 7 ARG B 46 ARG B 52 -1 N ARG B 52 O LEU B 130 SHEET 5 A 7 ILE B 57 ARG B 64 -1 O PHE B 61 N ILE B 49 SHEET 6 A 7 ALA B 69 ASN B 73 -1 O ALA B 69 N ARG B 64 SHEET 7 A 7 ASP B 84 HIS B 86 -1 O HIS B 86 N VAL B 70 SHEET 1 B 6 GLU A 13 PHE A 15 0 SHEET 2 B 6 VAL A 137 SER A 145 -1 O ALA A 142 N PHE A 14 SHEET 3 B 6 ALA A 32 PRO A 40 -1 N ARG A 33 O SER A 145 SHEET 4 B 6 TYR A 96 ASN A 103 -1 O LEU A 98 N LEU A 36 SHEET 5 B 6 ILE A 106 VAL A 111 -1 O SER A 108 N VAL A 101 SHEET 6 B 6 ALA A 114 VAL A 120 -1 O PHE A 116 N ILE A 109 SHEET 1 C 6 VAL A 21 PRO A 24 0 SHEET 2 C 6 LEU A 130 GLY A 135 -1 O ILE A 131 N ILE A 23 SHEET 3 C 6 ARG A 46 ARG A 52 -1 N ASN A 50 O GLU A 132 SHEET 4 C 6 ILE A 57 ARG A 64 -1 O PHE A 61 N ILE A 49 SHEET 5 C 6 ALA A 69 ASN A 73 -1 O ALA A 69 N ARG A 64 SHEET 6 C 6 ASP A 84 HIS A 86 -1 O ASP A 84 N ASN A 72 SHEET 1 D 2 THR A 75 SER A 76 0 SHEET 2 D 2 GLY A 79 TRP A 80 -1 O GLY A 79 N SER A 76 SHEET 1 E 6 GLU B 13 PHE B 15 0 SHEET 2 E 6 VAL B 137 SER B 145 -1 O ALA B 142 N PHE B 14 SHEET 3 E 6 ARG B 33 PRO B 40 -1 N ARG B 33 O SER B 145 SHEET 4 E 6 TYR B 96 SER B 102 -1 O TYR B 96 N LEU B 38 SHEET 5 E 6 ILE B 106 VAL B 111 -1 O SER B 108 N VAL B 101 SHEET 6 E 6 ALA B 114 VAL B 120 -1 O PHE B 116 N ILE B 109 SHEET 1 F 2 THR B 75 SER B 76 0 SHEET 2 F 2 GLY B 79 TRP B 80 -1 O GLY B 79 N SER B 76 LINK O4 FUC C 1 C1 GAL C 2 1555 1555 1.42 LINK O4 FUC D 1 C1 GAL D 2 1555 1555 1.43 LINK MG MG A 203 O HOH A 435 1555 1555 2.81 LINK MG MG A 203 O HOH A 447 1555 1555 2.53 LINK MG MG B 203 O HOH B 308 1555 1555 2.37 LINK MG MG B 203 O HOH B 309 1555 1555 2.50 LINK MG MG B 204 O HOH B 309 1555 1555 2.39 LINK MG MG B 204 O HOH B 317 1555 1555 2.42 CISPEP 1 THR A 19 PRO A 20 0 -2.70 CISPEP 2 THR B 19 PRO B 20 0 3.07 CRYST1 69.323 69.323 120.131 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014425 0.008328 0.000000 0.00000 SCALE2 0.000000 0.016657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008324 0.00000 MASTER 428 0 7 1 29 0 0 6 0 0 0 26 END