HEADER HYDROLASE 01-SEP-11 3VHQ TITLE CRYSTAL STRUCTURE OF THE CA6 SITE MUTANT OF PRO-SA-SUBTILISIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.62; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, PROTEOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.UEHARA,Y.TAKEUCHI,S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA REVDAT 1 11-JUL-12 3VHQ 0 JRNL AUTH R.UEHARA,Y.TAKEUCHI,S.I.TANAKA,K.TAKANO,Y.KOGA,S.KANAYA JRNL TITL REQUIREMENT OF CA(2+) IONS FOR THE HYPERTHERMOSTABILITY OF JRNL TITL 2 TK-SUBTILISIN FROM THERMOCOCCUS KODAKARENSIS JRNL REF BIOCHEMISTRY V. 51 5369 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22686281 JRNL DOI 10.1021/BI300427U REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 21552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2830 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2889 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3950 ; 1.973 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 6.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;39.226 ;25.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;18.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.494 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2194 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1904 ; 1.097 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3063 ; 1.951 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 3.165 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 887 ; 4.912 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-11. REMARK 100 THE RCSB ID CODE IS RCSB095058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0M SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.71700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.13950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.71700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.13950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.71700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.39000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.13950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.71700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.39000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.13950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 608 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 SER A 79 REMARK 465 THR A 80 REMARK 465 GLN A 81 REMARK 465 GLY A 374 REMARK 465 PRO A 375 REMARK 465 THR A 376 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 -176.42 -66.81 REMARK 500 SER A 105 46.76 -80.07 REMARK 500 ASP A 115 -155.41 -166.01 REMARK 500 ALA A 162 15.18 -141.29 REMARK 500 ASN A 166 -151.37 -163.37 REMARK 500 VAL A 170 -163.12 -124.29 REMARK 500 ILE A 219 -77.26 -129.43 REMARK 500 SER A 271 173.59 -57.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 22 24.6 L L OUTSIDE RANGE REMARK 500 VAL A 351 21.1 L L OUTSIDE RANGE REMARK 500 ILE A 357 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 619 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A 666 DISTANCE = 7.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 170 O REMARK 620 2 GLN A 84 OE1 82.3 REMARK 620 3 ILE A 168 O 104.4 89.9 REMARK 620 4 ASN A 166 OD1 163.9 81.7 77.3 REMARK 620 5 LEU A 164 O 80.4 78.5 166.9 94.7 REMARK 620 6 ASP A 124 OD1 118.6 155.5 96.3 76.6 91.8 REMARK 620 7 ASP A 124 OD2 76.5 155.9 84.4 119.5 108.7 48.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 208 OD1 REMARK 620 2 ASP A 226 OD2 104.3 REMARK 620 3 VAL A 210 O 89.5 165.8 REMARK 620 4 HOH A 406 O 162.7 92.8 73.6 REMARK 620 5 LEU A 205 O 95.4 89.2 85.9 87.1 REMARK 620 6 HOH A 578 O 86.1 91.6 92.9 91.2 178.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD1 REMARK 620 2 ILE A 218 O 88.6 REMARK 620 3 ASP A 212 OD1 175.6 93.4 REMARK 620 4 ASP A 225 OD2 87.6 82.6 96.5 REMARK 620 5 ASP A 214 OD2 96.6 172.5 81.1 102.9 REMARK 620 6 ASP A 216 OD1 95.8 86.9 80.4 168.8 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 399 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 ALA A 227 O 157.8 REMARK 620 3 GLU A 229 OE1 84.9 89.3 REMARK 620 4 GLN A 110 OE1 88.8 83.9 145.7 REMARK 620 5 HOH A 420 O 89.5 110.4 130.4 83.1 REMARK 620 6 GLU A 229 OE2 71.4 87.7 55.8 90.3 159.9 REMARK 620 7 HOH A 413 O 113.3 84.0 67.8 143.9 69.7 122.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 OD2 REMARK 620 2 ASP A 214 OD1 88.3 REMARK 620 3 ASP A 222 OD1 82.4 96.1 REMARK 620 4 ASP A 224 OD2 157.7 79.4 117.1 REMARK 620 5 ASP A 222 OD2 120.5 122.0 47.9 81.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E1P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNAUTOPROCESSED FORM2 OF TK-SUBTILISIN REMARK 900 RELATED ID: 2ZWO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CA2 SITE MUTANT OF PRO-SA- REMARK 900 SUBTILISIN REMARK 900 RELATED ID: 2ZWP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CA3 SITE MUTANT OF PRO-SA- REMARK 900 SUBTILISIN DBREF 3VHQ A 1 398 UNP P58502 TKSU_PYRKO 25 422 SEQADV 3VHQ ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQADV 3VHQ ALA A 372 UNP P58502 ASP 396 ENGINEERED MUTATION SEQRES 1 A 398 GLY GLU GLN ASN THR ILE ARG VAL ILE VAL SER VAL ASP SEQRES 2 A 398 LYS ALA LYS PHE ASN PRO HIS GLU VAL LEU GLY ILE GLY SEQRES 3 A 398 GLY HIS ILE VAL TYR GLN PHE LYS LEU ILE PRO ALA VAL SEQRES 4 A 398 VAL VAL ASP VAL PRO ALA ASN ALA VAL GLY LYS LEU LYS SEQRES 5 A 398 LYS MET PRO GLY VAL GLU LYS VAL GLU PHE ASP HIS GLN SEQRES 6 A 398 ALA VAL LEU LEU GLY LYS PRO SER TRP LEU GLY GLY GLY SEQRES 7 A 398 SER THR GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU SEQRES 8 A 398 ARG VAL LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SEQRES 9 A 398 SER VAL SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY SEQRES 10 A 398 VAL ASP TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA SEQRES 11 A 398 TRP CYS VAL SER THR LEU ARG GLY LYS VAL SER THR LYS SEQRES 12 A 398 LEU ARG ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS SEQRES 13 A 398 VAL ILE GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY SEQRES 14 A 398 VAL VAL GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL SEQRES 15 A 398 ARG VAL LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP SEQRES 16 A 398 ILE ALA ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP SEQRES 17 A 398 GLY VAL ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY SEQRES 18 A 398 ASP PRO ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER SEQRES 19 A 398 LEU GLY GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET SEQRES 20 A 398 ILE ILE GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA SEQRES 21 A 398 ALA SER GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO SEQRES 22 A 398 ALA ALA TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SEQRES 23 A 398 SER ASN ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO SEQRES 24 A 398 GLU VAL SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR SEQRES 25 A 398 PRO ASP ASP SER TYR GLU THR LEU MET GLY THR ALA MET SEQRES 26 A 398 ALA THR PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN SEQRES 27 A 398 ALA ALA TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL SEQRES 28 A 398 GLY THR PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY SEQRES 29 A 398 ILE LEU HIS ILE THR ALA ASP ALA LEU GLY PRO THR GLY SEQRES 30 A 398 TRP ASP ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA SEQRES 31 A 398 LEU ALA VAL GLN ALA ALA LEU GLY HET CA A 399 1 HET CA A 400 1 HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 2 CA 5(CA 2+) FORMUL 7 HOH *263(H2 O) HELIX 1 1 ASN A 18 ILE A 25 1 8 HELIX 2 2 ALA A 47 LYS A 53 1 7 HELIX 3 3 PRO A 87 VAL A 93 1 7 HELIX 4 4 ALA A 95 TRP A 99 5 5 HELIX 5 5 LEU A 125 ALA A 127 5 3 HELIX 6 6 LEU A 136 LYS A 139 5 4 HELIX 7 7 LYS A 143 ALA A 148 1 6 HELIX 8 8 GLY A 152 ALA A 163 1 12 HELIX 9 9 TYR A 193 GLY A 206 1 14 HELIX 10 10 ASP A 241 ALA A 254 1 14 HELIX 11 11 GLY A 322 TYR A 345 1 24 HELIX 12 12 THR A 361 ALA A 370 1 10 HELIX 13 13 ARG A 388 GLY A 398 1 11 SHEET 1 A 4 HIS A 28 GLN A 32 0 SHEET 2 A 4 ALA A 38 PRO A 44 -1 O VAL A 40 N TYR A 31 SHEET 3 A 4 THR A 5 VAL A 12 -1 N ILE A 6 O VAL A 43 SHEET 4 A 4 VAL A 57 PHE A 62 -1 O LYS A 59 N SER A 11 SHEET 1 B 3 SER A 190 SER A 192 0 SHEET 2 B 3 GLN A 65 LEU A 68 -1 N ALA A 66 O GLY A 191 SHEET 3 B 3 LEU A 235 GLY A 236 -1 O GLY A 236 N VAL A 67 SHEET 1 C 3 LYS A 71 PRO A 72 0 SHEET 2 C 3 SER A 316 MET A 321 -1 O MET A 321 N LYS A 71 SHEET 3 C 3 ILE A 308 TYR A 312 -1 N ILE A 308 O LEU A 320 SHEET 1 D 7 ILE A 129 SER A 134 0 SHEET 2 D 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 D 7 GLN A 110 ASP A 115 1 N VAL A 113 O VAL A 182 SHEET 4 D 7 VAL A 230 MET A 233 1 O VAL A 230 N ALA A 112 SHEET 5 D 7 VAL A 257 ALA A 261 1 O VAL A 259 N MET A 233 SHEET 6 D 7 VAL A 279 ILE A 285 1 O ILE A 280 N ALA A 260 SHEET 7 D 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.13 LINK O VAL A 170 CA CA A 402 1555 1555 2.15 LINK OD1 ASP A 208 CA CA A 400 1555 1555 2.18 LINK OD2 ASP A 226 CA CA A 400 1555 1555 2.19 LINK O VAL A 210 CA CA A 400 1555 1555 2.22 LINK CA CA A 400 O HOH A 406 1555 1555 2.23 LINK OD1 ASP A 222 CA CA A 401 1555 1555 2.23 LINK O VAL A 108 CA CA A 399 1555 1555 2.25 LINK OE1 GLN A 84 CA CA A 402 1555 1555 2.28 LINK O ILE A 218 CA CA A 401 1555 1555 2.28 LINK O ALA A 227 CA CA A 399 1555 1555 2.31 LINK O LEU A 205 CA CA A 400 1555 1555 2.31 LINK OE1 GLU A 229 CA CA A 399 1555 1555 2.32 LINK OE1 GLN A 110 CA CA A 399 1555 1555 2.35 LINK OD1 ASP A 212 CA CA A 401 1555 1555 2.37 LINK OD2 ASP A 216 CA CA A 403 1555 1555 2.38 LINK CA CA A 399 O HOH A 420 1555 1555 2.38 LINK OD2 ASP A 225 CA CA A 401 1555 1555 2.38 LINK O ILE A 168 CA CA A 402 1555 1555 2.39 LINK OD1 ASP A 214 CA CA A 403 1555 1555 2.41 LINK OD2 ASP A 214 CA CA A 401 1555 1555 2.45 LINK OD1 ASN A 166 CA CA A 402 1555 1555 2.45 LINK OE2 GLU A 229 CA CA A 399 1555 1555 2.46 LINK CA CA A 400 O HOH A 578 1555 1555 2.48 LINK OD1 ASP A 216 CA CA A 401 1555 1555 2.52 LINK O LEU A 164 CA CA A 402 1555 1555 2.52 LINK OD1 ASP A 124 CA CA A 402 1555 1555 2.56 LINK CA CA A 399 O HOH A 413 1555 1555 2.60 LINK OD1 ASP A 222 CA CA A 403 1555 1555 2.61 LINK OD2 ASP A 224 CA CA A 403 1555 1555 2.70 LINK OD2 ASP A 124 CA CA A 402 1555 1555 2.71 LINK OD2 ASP A 222 CA CA A 403 1555 1555 2.72 CISPEP 1 TYR A 272 PRO A 273 0 2.88 CISPEP 2 PRO A 313 ASP A 314 0 -6.84 SITE 1 AC1 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC1 6 HOH A 413 HOH A 420 SITE 1 AC2 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC2 6 HOH A 406 HOH A 578 SITE 1 AC3 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC3 6 ASP A 222 ASP A 225 SITE 1 AC4 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC4 6 ILE A 168 VAL A 170 SITE 1 AC5 4 ASP A 214 ASP A 216 ASP A 222 ASP A 224 CRYST1 73.434 92.780 124.279 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008046 0.00000 MASTER 427 0 5 13 17 0 9 6 0 0 0 31 END