HEADER TRANSCRIPTION 24-NOV-11 3UT1 TITLE CRYSTAL STRUCTURE OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 228-551; COMPND 5 SYNONYM: H-L(3)MBT-LIKE PROTEIN 3, L(3)MBT-LIKE PROTEIN 3, MBT-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L3MBTL3, KIAA1798, MBT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PET28-SBP-TEV; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BL21-V2R-PRARE2 KEYWDS CHROMATIN MODIFICATION, TRANSCRIPTION REPRESSION, MBT REPEAT, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHONG,W.TEMPEL,A.K.WERNIMONT,S.GRASLUND,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 08-NOV-17 3UT1 1 REMARK REVDAT 2 29-FEB-12 3UT1 1 AUTHOR JRNL REVDAT 1 28-DEC-11 3UT1 0 JRNL AUTH N.ZHONG,W.TEMPEL,A.K.WERNIMONT,S.GRASLUND,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,P.J.BROWN JRNL TITL CRYSTAL STRUCTURE OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.027 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1338 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2463 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04300 REMARK 3 B22 (A**2) : -1.47800 REMARK 3 B33 (A**2) : 0.63600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.88800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2591 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1714 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3547 ; 1.309 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4177 ; 0.847 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;30.125 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;13.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.277 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2911 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: REFINED INDIVIDUALLY. REMARK 3 RESTRAINTS FOR REFINEMENT OF HEPES COORDINATES WERE PREPARED ON REMARK 3 THE PRODRG SERVER USING COORDINATES FROM PDB ENTRY 1CXQ. COOT AND REMARK 3 THE MOLPROBITY SERVER WERE ALSO USED. NOTE BY AUTHOR: DENSITY AT REMARK 3 RESIDUE 373 OF CHAIN A IS INCONSISTENT WITH VALYL TYPE. REMARK 4 REMARK 4 3UT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.85900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: BASED ON UNPUBLISHED MODEL OF L3MBTL1, ITSELF REMARK 200 BASED ON MOLECULAR REPLACEMENT WITH COORDINATES FROM PDB ENTRY REMARK 200 1OYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG-3350, 0.1M AMMONIUM SULFATE, REMARK 280 0.2M COBALTOUS CHLORIDE, 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.14350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.30950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.14350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.30950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 LYS A 229 REMARK 465 LYS A 230 REMARK 465 PRO A 443 REMARK 465 ASN A 444 REMARK 465 PRO A 546 REMARK 465 LEU A 547 REMARK 465 GLU A 548 REMARK 465 LEU A 549 REMARK 465 MET A 550 REMARK 465 GLU A 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 249 CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 TYR A 259 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 336 CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 LYS A 347 CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 ILE A 364 CG1 CG2 CD1 REMARK 470 THR A 365 OG1 CG2 REMARK 470 VAL A 366 CG1 CG2 REMARK 470 ARG A 372 CD NE CZ NH1 NH2 REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 445 CG1 CG2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 LEU A 460 CG CD1 CD2 REMARK 470 LYS A 468 CD CE NZ REMARK 470 ASN A 488 CG OD1 ND2 REMARK 470 SER A 545 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 398 -128.88 47.00 REMARK 500 PHE A 448 126.82 -31.56 REMARK 500 LYS A 478 -16.28 86.90 REMARK 500 LYS A 478 -16.72 87.05 REMARK 500 ASP A 485 98.78 -68.72 REMARK 500 HIS A 503 12.88 -143.71 REMARK 500 PRO A 525 4.01 -68.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 1 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 94 O REMARK 620 2 HIS A 503 NE2 89.2 REMARK 620 3 HOH A 93 O 162.4 108.0 REMARK 620 4 HIS A 422 NE2 94.3 98.1 80.2 REMARK 620 5 HOH A 63 O 80.4 169.4 82.2 80.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 2 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 404 NE2 REMARK 620 2 HOH A 100 O 117.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 552 DBREF 3UT1 A 228 551 UNP Q96JM7 LMBL3_HUMAN 228 551 SEQRES 1 A 324 GLY LYS LYS ALA TRP CYS TRP ALA SER TYR LEU GLU GLU SEQRES 2 A 324 GLU LYS ALA VAL ALA VAL PRO ALA LYS LEU PHE LYS GLU SEQRES 3 A 324 HIS GLN SER PHE PRO TYR ASN LYS ASN GLY PHE LYS VAL SEQRES 4 A 324 GLY MET LYS LEU GLU GLY VAL ASP PRO GLU HIS GLN SER SEQRES 5 A 324 VAL TYR CYS VAL LEU THR VAL ALA GLU VAL CYS GLY TYR SEQRES 6 A 324 ARG ILE LYS LEU HIS PHE ASP GLY TYR SER ASP CYS TYR SEQRES 7 A 324 ASP PHE TRP VAL ASN ALA ASP ALA LEU ASP ILE HIS PRO SEQRES 8 A 324 VAL GLY TRP CYS GLU LYS THR GLY HIS LYS LEU HIS PRO SEQRES 9 A 324 PRO LYS GLY TYR LYS GLU GLU GLU PHE ASN TRP GLN THR SEQRES 10 A 324 TYR LEU LYS THR CYS LYS ALA GLN ALA ALA PRO LYS SER SEQRES 11 A 324 LEU PHE GLU ASN GLN ASN ILE THR VAL ILE PRO SER GLY SEQRES 12 A 324 PHE ARG VAL GLY MET LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 324 ASN PRO SER PHE ILE CYS VAL ALA THR VAL THR ASP MET SEQRES 14 A 324 VAL ASP ASN ARG PHE LEU VAL HIS PHE ASP ASN TRP ASP SEQRES 15 A 324 GLU SER TYR ASP TYR TRP CYS GLU ALA SER SER PRO HIS SEQRES 16 A 324 ILE HIS PRO VAL GLY TRP CYS LYS GLU HIS ARG ARG THR SEQRES 17 A 324 LEU ILE THR PRO PRO GLY TYR PRO ASN VAL LYS HIS PHE SEQRES 18 A 324 SER TRP ASP LYS TYR LEU GLU GLU THR ASN SER LEU PRO SEQRES 19 A 324 ALA PRO ALA ARG ALA PHE LYS VAL LYS PRO PRO HIS GLY SEQRES 20 A 324 PHE GLN LYS LYS MET LYS LEU GLU VAL VAL ASP LYS ARG SEQRES 21 A 324 ASN PRO MET PHE ILE ARG VAL ALA THR VAL ALA ASP THR SEQRES 22 A 324 ASP ASP HIS ARG VAL LYS VAL HIS PHE ASP GLY TRP ASN SEQRES 23 A 324 ASN CYS TYR ASP TYR TRP ILE ASP ALA ASP SER PRO ASP SEQRES 24 A 324 ILE HIS PRO VAL GLY TRP CYS SER LYS THR GLY HIS PRO SEQRES 25 A 324 LEU GLN PRO PRO LEU SER PRO LEU GLU LEU MET GLU HET CO A 1 1 HET CO A 2 1 HET CO A 3 1 HET CO A 4 1 HET CO A 5 1 HET EPE A 552 15 HET UNX A 553 1 HET UNX A 554 1 HET UNX A 555 1 HET UNX A 556 1 HET UNX A 557 1 HET UNX A 7 1 HET UNX A 8 1 HET UNX A 10 1 HET UNX A 11 1 HET UNX A 12 1 HET UNX A 13 1 HET UNX A 14 1 HETNAM CO COBALT (II) ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM UNX UNKNOWN ATOM OR ION HETSYN EPE HEPES FORMUL 2 CO 5(CO 2+) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 UNX 12(X) FORMUL 20 HOH *76(H2 O) HELIX 1 1 CYS A 233 LYS A 242 1 10 HELIX 2 2 PRO A 247 PHE A 251 5 5 HELIX 3 3 SER A 302 ASP A 306 5 5 HELIX 4 4 GLY A 320 GLY A 326 1 7 HELIX 5 5 ASN A 341 CYS A 349 1 9 HELIX 6 6 PRO A 355 PHE A 359 5 5 HELIX 7 7 ASP A 409 ASP A 413 5 5 HELIX 8 8 GLY A 427 HIS A 432 1 6 HELIX 9 9 SER A 449 THR A 457 1 9 HELIX 10 10 PRO A 463 PHE A 467 5 5 HELIX 11 11 ASN A 513 ASP A 517 5 5 HELIX 12 12 GLY A 531 GLY A 537 1 7 SHEET 1 A 5 PHE A 307 ASN A 310 0 SHEET 2 A 5 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 A 5 HIS A 277 CYS A 290 -1 N CYS A 290 O ARG A 293 SHEET 4 A 5 LYS A 269 ASP A 274 -1 N GLY A 272 O CYS A 282 SHEET 5 A 5 ILE A 316 HIS A 317 -1 O HIS A 317 N GLU A 271 SHEET 1 B 4 PHE A 307 ASN A 310 0 SHEET 2 B 4 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 B 4 HIS A 277 CYS A 290 -1 N CYS A 290 O ARG A 293 SHEET 4 B 4 LEU A 329 HIS A 330 1 O HIS A 330 N TYR A 281 SHEET 1 C 5 TYR A 414 CYS A 416 0 SHEET 2 C 5 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 C 5 ASN A 384 VAL A 397 -1 N ASP A 395 O LEU A 402 SHEET 4 C 5 LYS A 376 ASP A 381 -1 N ALA A 379 O CYS A 389 SHEET 5 C 5 ILE A 423 HIS A 424 -1 O HIS A 424 N GLU A 378 SHEET 1 D 4 TYR A 414 CYS A 416 0 SHEET 2 D 4 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 D 4 ASN A 384 VAL A 397 -1 N ASP A 395 O LEU A 402 SHEET 4 D 4 LEU A 436 ILE A 437 1 O ILE A 437 N ILE A 388 SHEET 1 E 5 TYR A 518 ASP A 521 0 SHEET 2 E 5 ARG A 504 PHE A 509 -1 N VAL A 507 O TYR A 518 SHEET 3 E 5 ILE A 492 THR A 500 -1 N ALA A 498 O LYS A 506 SHEET 4 E 5 LYS A 480 VAL A 484 -1 N VAL A 483 O ARG A 493 SHEET 5 E 5 ILE A 527 HIS A 528 -1 O HIS A 528 N GLU A 482 LINK CO CO A 1 O HOH A 94 1555 1555 1.97 LINK NE2 HIS A 503 CO CO A 1 1555 1555 2.18 LINK CO CO A 1 O HOH A 93 1555 1555 2.19 LINK NE2 HIS A 330 CO CO A 4 1555 1555 2.20 LINK NE2 HIS A 422 CO CO A 1 1555 1555 2.23 LINK NE2 HIS A 404 CO CO A 2 1555 1555 2.29 LINK CO CO A 1 O HOH A 63 1555 1555 2.32 LINK NE2 HIS A 432 CO CO A 3 1555 1555 2.51 LINK CO CO A 2 O HOH A 100 1555 1555 2.67 SITE 1 AC1 5 HOH A 63 HOH A 93 HOH A 94 HIS A 422 SITE 2 AC1 5 HIS A 503 SITE 1 AC2 3 HOH A 100 HIS A 404 ASN A 407 SITE 1 AC3 1 HIS A 432 SITE 1 AC4 1 HIS A 330 SITE 1 AC5 1 HIS A 277 SITE 1 AC6 8 PRO A 355 ASP A 381 ASN A 384 PHE A 387 SITE 2 AC6 8 CYS A 389 PHE A 405 TRP A 408 TYR A 412 CRYST1 92.287 70.619 58.574 90.00 119.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010836 0.000000 0.006243 0.00000 SCALE2 0.000000 0.014160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019704 0.00000 MASTER 369 0 18 12 23 0 8 6 0 0 0 25 END