HEADER OXIDOREDUCTASE 31-OCT-11 3UF0 TITLE CRYSTAL STRUCTURE OF A PUTATIVE NAD(P) DEPENDENT GLUCONATE 5- TITLE 2 DEHYDROGENASE FROM BEUTENBERGIA CAVERNAE(EFI TARGET EFI-502044) WITH TITLE 3 BOUND NADP (LOW OCCUPANCY) CAVEAT 3UF0 CHIRALITY ERROR AT C1D OF B NAP 274 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.125; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BEUTENBERGIA CAVERNAE; SOURCE 3 ORGANISM_TAXID: 471853; SOURCE 4 STRAIN: DSM 12333; SOURCE 5 GENE: BCAV_0642; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS GLUCONATE, GLUCONATE 5-DEHYDRATASE, NAD(P) DEPENDENT, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, OXIDOREDUCTASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,B.HILLERICH,E.WASHINGTON,A.SCOTT GLENN, AUTHOR 2 S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER,J.A.GERLT, AUTHOR 3 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 24-JAN-18 3UF0 1 JRNL REVDAT 2 22-FEB-12 3UF0 1 REVDAT 1 23-NOV-11 3UF0 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,B.HILLERICH,E.WASHINGTON, JRNL AUTH 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK, JRNL AUTH 3 H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 4 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE NAD(P) DEPENDENT GLUCONATE JRNL TITL 2 5-DEHYDROGENASE FROM BEUTENBERGIA CAVERNAE(EFI TARGET JRNL TITL 3 EFI-502044) WITH BOUND NADP (LOW OCCUPANCY) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 34249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7548 - 4.5755 1.00 3001 164 0.1561 0.1873 REMARK 3 2 4.5755 - 3.6323 1.00 2828 166 0.1425 0.1530 REMARK 3 3 3.6323 - 3.1733 1.00 2802 168 0.1667 0.1852 REMARK 3 4 3.1733 - 2.8833 0.99 2771 152 0.1762 0.2121 REMARK 3 5 2.8833 - 2.6766 0.99 2780 124 0.1742 0.2031 REMARK 3 6 2.6766 - 2.5189 0.98 2705 148 0.1755 0.2136 REMARK 3 7 2.5189 - 2.3927 0.97 2689 135 0.1768 0.2822 REMARK 3 8 2.3927 - 2.2886 0.96 2665 146 0.1644 0.2281 REMARK 3 9 2.2886 - 2.2005 0.94 2620 125 0.1569 0.2062 REMARK 3 10 2.2005 - 2.1245 0.94 2588 131 0.1571 0.2225 REMARK 3 11 2.1245 - 2.0581 0.94 2602 121 0.1646 0.2419 REMARK 3 12 2.0581 - 1.9993 0.91 2486 132 0.1716 0.2151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 45.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32790 REMARK 3 B22 (A**2) : -1.32790 REMARK 3 B33 (A**2) : 2.65590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3803 REMARK 3 ANGLE : 1.034 5208 REMARK 3 CHIRALITY : 0.095 597 REMARK 3 PLANARITY : 0.004 678 REMARK 3 DIHEDRAL : 17.725 1296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 26:64) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9518 -0.0619 28.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.2911 REMARK 3 T33: 0.2956 T12: 0.0809 REMARK 3 T13: 0.0650 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.2407 L22: 0.5539 REMARK 3 L33: 0.4622 L12: -0.0787 REMARK 3 L13: 0.2409 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.1394 S13: -0.0058 REMARK 3 S21: 0.0059 S22: 0.0335 S23: -0.3853 REMARK 3 S31: 0.1592 S32: 0.4201 S33: -0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 65:90) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1192 0.0648 20.7913 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.4297 REMARK 3 T33: 0.3747 T12: 0.0885 REMARK 3 T13: 0.1658 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2598 L22: 0.8563 REMARK 3 L33: 0.8378 L12: 0.4576 REMARK 3 L13: -0.0281 L23: 0.1550 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: -0.0892 S13: 0.1958 REMARK 3 S21: -0.1232 S22: 0.0175 S23: -0.4958 REMARK 3 S31: 0.0970 S32: 0.3864 S33: 0.1263 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:104) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5357 -3.9834 13.6425 REMARK 3 T TENSOR REMARK 3 T11: 0.4462 T22: 0.2458 REMARK 3 T33: 0.2740 T12: 0.0900 REMARK 3 T13: 0.0385 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.9247 L22: 0.7471 REMARK 3 L33: 0.5735 L12: 0.7935 REMARK 3 L13: 0.1584 L23: 0.5501 REMARK 3 S TENSOR REMARK 3 S11: 0.2157 S12: 0.2419 S13: -0.3166 REMARK 3 S21: -0.6926 S22: -0.0365 S23: -0.1751 REMARK 3 S31: -0.3869 S32: -0.1356 S33: -0.0703 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 105:126) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0287 9.1473 21.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.2673 REMARK 3 T33: 0.3758 T12: -0.0048 REMARK 3 T13: 0.0608 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4530 L22: 0.2362 REMARK 3 L33: 0.3582 L12: -0.2681 REMARK 3 L13: 0.0517 L23: 0.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.1664 S13: 0.2339 REMARK 3 S21: -0.1008 S22: 0.0275 S23: -0.2745 REMARK 3 S31: -0.1967 S32: 0.2437 S33: -0.0478 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 127:155) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9869 6.2626 18.4995 REMARK 3 T TENSOR REMARK 3 T11: 0.2738 T22: 0.2280 REMARK 3 T33: 0.2213 T12: 0.0071 REMARK 3 T13: 0.0616 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.8252 L22: 0.3941 REMARK 3 L33: 0.5988 L12: -0.3774 REMARK 3 L13: 0.0463 L23: 0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.1413 S12: 0.2054 S13: -0.1883 REMARK 3 S21: -0.1839 S22: -0.0716 S23: 0.0241 REMARK 3 S31: 0.1067 S32: 0.1961 S33: -0.0193 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:199) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9050 10.1826 28.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.1708 REMARK 3 T33: 0.2251 T12: -0.0250 REMARK 3 T13: 0.0232 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.5855 L22: 0.1584 REMARK 3 L33: 0.6635 L12: -0.3000 REMARK 3 L13: -0.0265 L23: 0.0791 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0205 S13: 0.1085 REMARK 3 S21: 0.1122 S22: 0.0112 S23: -0.0498 REMARK 3 S31: -0.2109 S32: 0.0720 S33: -0.0115 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 200:273) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0309 15.2840 36.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.2239 REMARK 3 T33: 0.2302 T12: -0.0228 REMARK 3 T13: 0.0309 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.1542 L22: 0.3250 REMARK 3 L33: 0.3468 L12: 0.1167 REMARK 3 L13: 0.1583 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: 0.0225 S13: -0.0341 REMARK 3 S21: -0.0701 S22: 0.0741 S23: -0.1939 REMARK 3 S31: -0.0030 S32: 0.2145 S33: 0.0286 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 26:104) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7184 29.7453 12.2227 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.3582 REMARK 3 T33: 0.1834 T12: 0.1275 REMARK 3 T13: -0.1329 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 0.0921 L22: 0.6284 REMARK 3 L33: 0.5141 L12: 0.1763 REMARK 3 L13: -0.0687 L23: 0.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.1570 S12: 0.2879 S13: 0.0325 REMARK 3 S21: -0.4720 S22: -0.1080 S23: 0.2984 REMARK 3 S31: -0.0479 S32: -0.2230 S33: 0.0427 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 105:199) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7837 20.9987 19.9096 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.1080 REMARK 3 T33: 0.1234 T12: -0.0108 REMARK 3 T13: -0.0025 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.4414 L22: 0.2775 REMARK 3 L33: 0.4053 L12: -0.3333 REMARK 3 L13: 0.0894 L23: 0.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: 0.1348 S13: -0.0521 REMARK 3 S21: -0.1450 S22: 0.0195 S23: 0.1709 REMARK 3 S31: -0.0202 S32: -0.0688 S33: 0.0034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 200:273) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8140 18.8463 29.9624 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1900 REMARK 3 T33: 0.2076 T12: 0.0057 REMARK 3 T13: -0.0506 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.6083 L22: 0.1789 REMARK 3 L33: 0.9437 L12: -0.3284 REMARK 3 L13: -0.0515 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: 0.0988 S13: -0.0633 REMARK 3 S21: -0.1624 S22: -0.0388 S23: 0.1321 REMARK 3 S31: -0.0068 S32: -0.1944 S33: -0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 81.685 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3O03 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL, 5 MM DTT, 5 MM MGCL2; RESERVOIR (100 MM REMARK 280 NAACETATE PH 4.6, 2 M NAFORMATE); CRYOPROTECTION (RESERVOIR + 20% REMARK 280 GLYCEROL), SITTING DROP VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.09100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.73500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.13650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.73500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.04550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.13650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.04550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.09100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS AN TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.18200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.18200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 321 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 -70.07 -50.12 REMARK 500 ALA A 98 140.35 -178.06 REMARK 500 ALA A 142 -138.28 -91.25 REMARK 500 VAL A 153 42.50 -141.49 REMARK 500 ASP A 245 14.49 -143.53 REMARK 500 ALA B 98 143.13 -172.84 REMARK 500 ALA B 142 -137.70 -95.11 REMARK 500 ASP B 245 14.16 -140.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 274 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-502044 RELATED DB: TARGETTRACK DBREF 3UF0 A 1 251 UNP C5BY10 C5BY10_BEUC1 1 251 DBREF 3UF0 B 1 251 UNP C5BY10 C5BY10_BEUC1 1 251 SEQADV 3UF0 MET A -21 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -20 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -19 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -18 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -17 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -16 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -15 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER A -14 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER A -13 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY A -12 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 VAL A -11 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASP A -10 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU A -9 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY A -8 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 THR A -7 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLU A -6 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASN A -5 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU A -4 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 TYR A -3 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 PHE A -2 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLN A -1 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER A 0 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 MET B -21 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -20 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -19 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -18 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -17 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -16 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -15 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER B -14 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER B -13 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY B -12 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 VAL B -11 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASP B -10 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU B -9 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY B -8 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 THR B -7 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLU B -6 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASN B -5 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU B -4 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 TYR B -3 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 PHE B -2 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLN B -1 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER B 0 UNP C5BY10 EXPRESSION TAG SEQRES 1 A 273 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 273 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR GLY PRO SEQRES 3 A 273 PHE SER LEU ALA GLY ARG THR ALA VAL VAL THR GLY ALA SEQRES 4 A 273 GLY SER GLY ILE GLY ARG ALA ILE ALA HIS GLY TYR ALA SEQRES 5 A 273 ARG ALA GLY ALA HIS VAL LEU ALA TRP GLY ARG THR ASP SEQRES 6 A 273 GLY VAL LYS GLU VAL ALA ASP GLU ILE ALA ASP GLY GLY SEQRES 7 A 273 GLY SER ALA GLU ALA VAL VAL ALA ASP LEU ALA ASP LEU SEQRES 8 A 273 GLU GLY ALA ALA ASN VAL ALA GLU GLU LEU ALA ALA THR SEQRES 9 A 273 ARG ARG VAL ASP VAL LEU VAL ASN ASN ALA GLY ILE ILE SEQRES 10 A 273 ALA ARG ALA PRO ALA GLU GLU VAL SER LEU GLY ARG TRP SEQRES 11 A 273 ARG GLU VAL LEU THR VAL ASN LEU ASP ALA ALA TRP VAL SEQRES 12 A 273 LEU SER ARG SER PHE GLY THR ALA MET LEU ALA HIS GLY SEQRES 13 A 273 SER GLY ARG ILE VAL THR ILE ALA SER MET LEU SER PHE SEQRES 14 A 273 GLN GLY GLY ARG ASN VAL ALA ALA TYR ALA ALA SER LYS SEQRES 15 A 273 HIS ALA VAL VAL GLY LEU THR ARG ALA LEU ALA SER GLU SEQRES 16 A 273 TRP ALA GLY ARG GLY VAL GLY VAL ASN ALA LEU ALA PRO SEQRES 17 A 273 GLY TYR VAL VAL THR ALA ASN THR ALA ALA LEU ARG ALA SEQRES 18 A 273 ASP ASP GLU ARG ALA ALA GLU ILE THR ALA ARG ILE PRO SEQRES 19 A 273 ALA GLY ARG TRP ALA THR PRO GLU ASP MET VAL GLY PRO SEQRES 20 A 273 ALA VAL PHE LEU ALA SER ASP ALA ALA SER TYR VAL HIS SEQRES 21 A 273 GLY GLN VAL LEU ALA VAL ASP GLY GLY TRP LEU ALA SER SEQRES 1 B 273 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 273 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR GLY PRO SEQRES 3 B 273 PHE SER LEU ALA GLY ARG THR ALA VAL VAL THR GLY ALA SEQRES 4 B 273 GLY SER GLY ILE GLY ARG ALA ILE ALA HIS GLY TYR ALA SEQRES 5 B 273 ARG ALA GLY ALA HIS VAL LEU ALA TRP GLY ARG THR ASP SEQRES 6 B 273 GLY VAL LYS GLU VAL ALA ASP GLU ILE ALA ASP GLY GLY SEQRES 7 B 273 GLY SER ALA GLU ALA VAL VAL ALA ASP LEU ALA ASP LEU SEQRES 8 B 273 GLU GLY ALA ALA ASN VAL ALA GLU GLU LEU ALA ALA THR SEQRES 9 B 273 ARG ARG VAL ASP VAL LEU VAL ASN ASN ALA GLY ILE ILE SEQRES 10 B 273 ALA ARG ALA PRO ALA GLU GLU VAL SER LEU GLY ARG TRP SEQRES 11 B 273 ARG GLU VAL LEU THR VAL ASN LEU ASP ALA ALA TRP VAL SEQRES 12 B 273 LEU SER ARG SER PHE GLY THR ALA MET LEU ALA HIS GLY SEQRES 13 B 273 SER GLY ARG ILE VAL THR ILE ALA SER MET LEU SER PHE SEQRES 14 B 273 GLN GLY GLY ARG ASN VAL ALA ALA TYR ALA ALA SER LYS SEQRES 15 B 273 HIS ALA VAL VAL GLY LEU THR ARG ALA LEU ALA SER GLU SEQRES 16 B 273 TRP ALA GLY ARG GLY VAL GLY VAL ASN ALA LEU ALA PRO SEQRES 17 B 273 GLY TYR VAL VAL THR ALA ASN THR ALA ALA LEU ARG ALA SEQRES 18 B 273 ASP ASP GLU ARG ALA ALA GLU ILE THR ALA ARG ILE PRO SEQRES 19 B 273 ALA GLY ARG TRP ALA THR PRO GLU ASP MET VAL GLY PRO SEQRES 20 B 273 ALA VAL PHE LEU ALA SER ASP ALA ALA SER TYR VAL HIS SEQRES 21 B 273 GLY GLN VAL LEU ALA VAL ASP GLY GLY TRP LEU ALA SER HET NAP A 274 48 HET NAP B 274 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *182(H2 O) HELIX 1 1 SER A 19 ALA A 32 1 14 HELIX 2 2 ASP A 43 ASP A 54 1 12 HELIX 3 3 ASP A 68 ARG A 83 1 16 HELIX 4 4 PRO A 99 VAL A 103 5 5 HELIX 5 5 SER A 104 LEU A 116 1 13 HELIX 6 6 LEU A 116 GLY A 134 1 19 HELIX 7 7 SER A 143 PHE A 147 5 5 HELIX 8 8 VAL A 153 ALA A 175 1 23 HELIX 9 9 THR A 191 ASN A 193 5 3 HELIX 10 10 THR A 194 ALA A 199 1 6 HELIX 11 11 ASP A 200 ILE A 211 1 12 HELIX 12 12 THR A 218 ASP A 221 5 4 HELIX 13 13 MET A 222 SER A 231 1 10 HELIX 14 14 ASP A 232 SER A 235 5 4 HELIX 15 15 GLY A 247 SER A 251 5 5 HELIX 16 16 SER B 19 ALA B 32 1 14 HELIX 17 17 ASP B 43 GLY B 55 1 13 HELIX 18 18 ASP B 68 ARG B 83 1 16 HELIX 19 19 PRO B 99 VAL B 103 5 5 HELIX 20 20 SER B 104 LEU B 116 1 13 HELIX 21 21 LEU B 116 GLY B 134 1 19 HELIX 22 22 SER B 143 PHE B 147 5 5 HELIX 23 23 VAL B 153 ALA B 175 1 23 HELIX 24 24 THR B 191 ASN B 193 5 3 HELIX 25 25 THR B 194 ASP B 200 1 7 HELIX 26 26 ASP B 200 ILE B 211 1 12 HELIX 27 27 THR B 218 ASP B 221 5 4 HELIX 28 28 MET B 222 SER B 231 1 10 HELIX 29 29 ASP B 232 SER B 235 5 4 HELIX 30 30 GLY B 247 SER B 251 5 5 SHEET 1 A 7 SER A 58 VAL A 63 0 SHEET 2 A 7 HIS A 35 GLY A 40 1 N ALA A 38 O GLU A 60 SHEET 3 A 7 THR A 11 THR A 15 1 N ALA A 12 O LEU A 37 SHEET 4 A 7 VAL A 87 ASN A 90 1 O VAL A 89 N VAL A 13 SHEET 5 A 7 GLY A 136 ILE A 141 1 O VAL A 139 N LEU A 88 SHEET 6 A 7 VAL A 179 PRO A 186 1 O ASN A 182 N ILE A 138 SHEET 7 A 7 VAL A 241 VAL A 244 1 O LEU A 242 N ALA A 183 SHEET 1 B 7 SER B 58 VAL B 63 0 SHEET 2 B 7 HIS B 35 GLY B 40 1 N ALA B 38 O VAL B 62 SHEET 3 B 7 THR B 11 THR B 15 1 N ALA B 12 O LEU B 37 SHEET 4 B 7 VAL B 87 ASN B 90 1 O VAL B 87 N VAL B 13 SHEET 5 B 7 GLY B 136 ILE B 141 1 O VAL B 139 N LEU B 88 SHEET 6 B 7 VAL B 179 PRO B 186 1 O ASN B 182 N ILE B 138 SHEET 7 B 7 VAL B 241 VAL B 244 1 O VAL B 244 N ALA B 185 SITE 1 AC1 30 GLY A 16 SER A 19 GLY A 20 ILE A 21 SITE 2 AC1 30 ARG A 41 THR A 42 ASP A 65 LEU A 66 SITE 3 AC1 30 ALA A 67 ASN A 91 ALA A 92 GLY A 93 SITE 4 AC1 30 ILE A 94 ILE A 141 ALA A 142 SER A 143 SITE 5 AC1 30 TYR A 156 LYS A 160 PRO A 186 GLY A 187 SITE 6 AC1 30 TYR A 188 VAL A 189 THR A 191 ASN A 193 SITE 7 AC1 30 THR A 194 HOH A 292 HOH A 319 HOH A 321 SITE 8 AC1 30 HOH A 366 HOH A 367 SITE 1 AC2 27 GLY B 16 SER B 19 GLY B 20 ILE B 21 SITE 2 AC2 27 ARG B 41 ASP B 65 LEU B 66 ALA B 67 SITE 3 AC2 27 ASN B 91 ALA B 92 GLY B 93 ILE B 94 SITE 4 AC2 27 ILE B 141 ALA B 142 SER B 143 TYR B 156 SITE 5 AC2 27 LYS B 160 PRO B 186 GLY B 187 VAL B 189 SITE 6 AC2 27 THR B 191 ALA B 192 ASN B 193 THR B 194 SITE 7 AC2 27 HOH B 285 HOH B 331 HOH B 359 CRYST1 115.470 115.470 76.182 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013126 0.00000 MASTER 500 0 2 30 14 0 15 6 0 0 0 42 END