HEADER STRUCTURAL PROTEIN 23-OCT-11 3UB5 TITLE PROFILIN:ACTIN WITH A WIDE OPEN NUCLEOTIDE CLEFT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, CYTOPLASMIC 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-ACTIN, ACTIN, CYTOPLASMIC 1, N-TERMINALLY PROCESSED; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROFILIN-1; COMPND 7 CHAIN: P; COMPND 8 SYNONYM: PROFILIN I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 8 ORGANISM_TAXID: 9913 KEYWDS ATPASE, NUCLEOTIDE EXCHANGE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.PORTA,G.E.BORGSTAHL REVDAT 1 25-APR-12 3UB5 0 JRNL AUTH J.C.PORTA,G.E.BORGSTAHL JRNL TITL STRUCTURAL BASIS FOR PROFILIN-MEDIATED ACTIN NUCLEOTIDE JRNL TITL 2 EXCHANGE. JRNL REF J.MOL.BIOL. V. 418 103 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22366544 JRNL DOI 10.1016/J.JMB.2012.02.012 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 24323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1302 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1224 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -3.46000 REMARK 3 B33 (A**2) : 3.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4058 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5489 ; 1.874 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 6.977 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;37.784 ;23.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;20.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;23.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3014 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3UB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB068533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX CONFOCAL MAX-FLUX REMARK 200 OPTIC REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : EVAL15 REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26998 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 93.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3M POTASSIUM PHOSPHATE PH 7.3, 0.5M REMARK 280 ATP, 0.2M CACL2, 1MM DTT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG P 135 CL CL P 141 1.74 REMARK 500 OD1 ASP P 54 OG SER P 57 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP P 3 CE2 TRP P 3 CD2 0.075 REMARK 500 HIS P 119 CG HIS P 119 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP P 18 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG P 88 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG P 88 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG P 135 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 51.51 -90.70 REMARK 500 ALA A 29 115.18 154.51 REMARK 500 HIS A 40 -42.98 73.45 REMARK 500 VAL A 43 -84.93 43.12 REMARK 500 MET A 47 -46.75 176.20 REMARK 500 ARG A 62 -46.89 -29.65 REMARK 500 ALA A 131 143.95 -173.25 REMARK 500 THR A 148 -33.21 -136.07 REMARK 500 LEU A 180 102.48 -163.98 REMARK 500 SER A 199 55.83 -142.75 REMARK 500 THR A 201 -24.65 -142.79 REMARK 500 ASP A 244 -128.06 -69.72 REMARK 500 ASN A 252 -47.76 -24.92 REMARK 500 PRO A 322 138.56 -31.88 REMARK 500 THR A 351 -39.82 -23.40 REMARK 500 ALA P 20 143.47 -171.80 REMARK 500 ASP P 26 -105.60 46.55 REMARK 500 LYS P 37 -145.98 -111.29 REMARK 500 SER P 56 -19.33 -140.49 REMARK 500 SER P 76 24.98 -143.50 REMARK 500 GLU P 82 -65.52 -120.56 REMARK 500 PHE P 83 -0.87 69.40 REMARK 500 PRO P 96 152.14 -41.59 REMARK 500 THR P 105 -164.53 -110.48 REMARK 500 SER P 137 31.58 -96.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER P 56 23.2 L L OUTSIDE RANGE REMARK 500 THR P 103 23.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 378 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 205 OE2 REMARK 620 2 THR A 201 OG1 90.5 REMARK 620 3 SER A 199 O 82.9 105.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 377 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 376 O2B REMARK 620 2 ATP A 376 O1B 66.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL P 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 141 DBREF 3UB5 A 2 375 UNP P60712 ACTB_BOVIN 2 375 DBREF 3UB5 P 1 139 UNP P02584 PROF1_BOVIN 2 140 SEQADV 3UB5 ACE P 0 UNP P02584 ACETYLATION SEQRES 1 A 374 ASP ASP ASP ILE ALA ALA LEU VAL VAL ASP ASN GLY SER SEQRES 2 A 374 GLY MET CYS LYS ALA GLY PHE ALA GLY ASP ASP ALA PRO SEQRES 3 A 374 ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG HIS SEQRES 4 A 374 GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER TYR SEQRES 5 A 374 VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU THR SEQRES 6 A 374 LEU LYS TYR PRO ILE GLU HIS GLY ILE VAL THR ASN TRP SEQRES 7 A 374 ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR ASN SEQRES 8 A 374 GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO VAL LEU LEU SEQRES 9 A 374 THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU LYS SEQRES 10 A 374 MET THR GLN ILE MET PHE GLU THR PHE ASN THR PRO ALA SEQRES 11 A 374 MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR ALA SEQRES 12 A 374 SER GLY ARG THR THR GLY ILE VAL MET ASP SER GLY ASP SEQRES 13 A 374 GLY VAL THR HIS THR VAL PRO ILE TYR GLU GLY TYR ALA SEQRES 14 A 374 LEU PRO HIS ALA ILE LEU ARG LEU ASP LEU ALA GLY ARG SEQRES 15 A 374 ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU ARG SEQRES 16 A 374 GLY TYR SER PHE THR THR THR ALA GLU ARG GLU ILE VAL SEQRES 17 A 374 ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU ASP SEQRES 18 A 374 PHE GLU GLN GLU MET ALA THR ALA ALA SER SER SER SER SEQRES 19 A 374 LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL ILE SEQRES 20 A 374 THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU ALA LEU SEQRES 21 A 374 PHE GLN PRO SER PHE LEU GLY MET GLU SER CYS GLY ILE SEQRES 22 A 374 HIS GLU THR THR PHE ASN SER ILE MET LYS CYS ASP VAL SEQRES 23 A 374 ASP ILE ARG LYS ASP LEU TYR ALA ASN THR VAL LEU SER SEQRES 24 A 374 GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG MET SEQRES 25 A 374 GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET LYS SEQRES 26 A 374 ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER VAL SEQRES 27 A 374 TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR PHE SEQRES 28 A 374 GLN GLN MET TRP ILE SER LYS GLN GLU TYR ASP GLU SER SEQRES 29 A 374 GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 P 140 ACE ALA GLY TRP ASN ALA TYR ILE ASP ASN LEU MET ALA SEQRES 2 P 140 ASP GLY THR CYS GLN ASP ALA ALA ILE VAL GLY TYR LYS SEQRES 3 P 140 ASP SER PRO SER VAL TRP ALA ALA VAL PRO GLY LYS THR SEQRES 4 P 140 PHE VAL ASN ILE THR PRO ALA GLU VAL GLY ILE LEU VAL SEQRES 5 P 140 GLY LYS ASP ARG SER SER PHE PHE VAL ASN GLY LEU THR SEQRES 6 P 140 LEU GLY GLY GLN LYS CYS SER VAL ILE ARG ASP SER LEU SEQRES 7 P 140 LEU GLN ASP GLY GLU PHE THR MET ASP LEU ARG THR LYS SEQRES 8 P 140 SER THR GLY GLY ALA PRO THR PHE ASN ILE THR VAL THR SEQRES 9 P 140 MET THR ALA LYS THR LEU VAL LEU LEU MET GLY LYS GLU SEQRES 10 P 140 GLY VAL HIS GLY GLY MET ILE ASN LYS LYS CYS TYR GLU SEQRES 11 P 140 MET ALA SER HIS LEU ARG ARG SER GLN TYR HET ACE P 0 3 HET ATP A 376 31 HET CA A 377 1 HET CA A 378 1 HET GOL P 140 6 HET CL P 141 1 HETNAM ACE ACETYL GROUP HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACE C2 H4 O FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 CA 2(CA 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 CL CL 1- FORMUL 8 HOH *83(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 GLY A 197 1 17 HELIX 8 8 THR A 202 CYS A 217 1 16 HELIX 9 9 ASP A 222 SER A 232 1 11 HELIX 10 10 ASN A 252 CYS A 257 1 6 HELIX 11 11 PRO A 258 GLN A 263 1 6 HELIX 12 12 PRO A 264 GLY A 268 5 5 HELIX 13 13 GLY A 273 MET A 283 1 11 HELIX 14 14 ASP A 286 ALA A 295 1 10 HELIX 15 15 GLY A 301 MET A 305 5 5 HELIX 16 16 GLY A 308 ALA A 321 1 14 HELIX 17 17 TYR A 337 SER A 348 1 12 HELIX 18 18 LEU A 349 MET A 355 5 7 HELIX 19 19 LYS A 359 GLY A 366 1 8 HELIX 20 20 SER A 368 CYS A 374 1 7 HELIX 21 21 TRP P 3 ALA P 12 1 10 HELIX 22 22 THR P 38 ILE P 42 5 5 HELIX 23 23 THR P 43 GLY P 52 1 10 HELIX 24 24 SER P 56 GLY P 62 1 7 HELIX 25 25 HIS P 119 SER P 137 1 19 SHEET 1 A 6 VAL A 30 PRO A 32 0 SHEET 2 A 6 MET A 16 PHE A 21 -1 N CYS A 17 O PHE A 31 SHEET 3 A 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 VAL A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 SER A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O LYS A 68 N VAL A 35 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 VAL A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 LEU A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 E 5 TYR A 169 ALA A 170 0 SHEET 2 E 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 5 GLY A 150 SER A 155 -1 N VAL A 152 O VAL A 163 SHEET 4 E 5 THR A 297 SER A 300 1 O SER A 300 N MET A 153 SHEET 5 E 5 ILE A 329 ILE A 330 1 O ILE A 330 N THR A 297 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 250 N LYS A 238 SHEET 1 G 7 SER P 29 ALA P 33 0 SHEET 2 G 7 CYS P 16 GLY P 23 -1 N ILE P 21 O TRP P 31 SHEET 3 G 7 THR P 108 GLY P 114 -1 O LEU P 109 N VAL P 22 SHEET 4 G 7 ASN P 99 MET P 104 -1 N THR P 103 O VAL P 110 SHEET 5 G 7 THR P 84 THR P 89 -1 N MET P 85 O VAL P 102 SHEET 6 G 7 GLN P 68 ASP P 75 -1 N ILE P 73 O ASP P 86 SHEET 7 G 7 LEU P 63 LEU P 65 -1 N LEU P 63 O CYS P 70 LINK C ACE P 0 N ALA P 1 1555 1555 1.34 LINK OE2 GLU A 205 CA CA A 378 1555 1555 2.32 LINK O2B ATP A 376 CA CA A 377 1555 1555 2.32 LINK OG1 THR A 201 CA CA A 378 1555 1555 2.33 LINK O SER A 199 CA CA A 378 1555 1555 2.33 LINK O1B ATP A 376 CA CA A 377 1555 1555 2.57 SITE 1 AC1 15 SER A 14 GLY A 15 GLY A 156 ASP A 157 SITE 2 AC1 15 GLY A 158 GLY A 182 ARG A 210 LYS A 213 SITE 3 AC1 15 GLU A 214 GLY A 302 MET A 305 TYR A 306 SITE 4 AC1 15 LYS A 336 CA A 377 HOH A 381 SITE 1 AC2 3 GLY A 15 MET A 16 ATP A 376 SITE 1 AC3 3 SER A 199 THR A 201 GLU A 205 SITE 1 AC4 2 HIS P 133 ARG P 136 SITE 1 AC5 4 TYR P 128 ALA P 131 SER P 132 ARG P 135 CRYST1 38.000 72.000 186.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005353 0.00000 MASTER 400 0 6 25 28 0 8 6 0 0 0 40 END