HEADER TRANSFERASE/VIRAL PROTEIN 21-OCT-11 3UA7 TITLE CRYSTAL STRUCTURE OF THE HUMAN FYN SH3 DOMAIN IN COMPLEX WITH A TITLE 2 PEPTIDE FROM THE HEPATITIS C VIRUS NS5A-PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SH3 DOMAIN (UNP RESIDUES 81-143); COMPND 5 SYNONYM: PROTO-ONCOGENE SYN, PROTO-ONCOGENE C-FYN, SRC-LIKE KINASE, COMPND 6 SLK, P59-FYN; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NON-STRUCTURAL PROTEIN 5A; COMPND 11 CHAIN: E, F; COMPND 12 FRAGMENT: PROLINE-RICH REGION (UNP RESIDUES 350-360); COMPND 13 SYNONYM: NS5A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 14 ORGANISM_COMMON: HCV; SOURCE 15 ORGANISM_TAXID: 11103 KEYWDS BETA BARREL, KINASE, POLY PROLINE RICH MOTIF, TRANSFERASE-VIRAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MARTIN-GARCIA,J.RUIZ-SANZ,I.LUQUE,A.CAMARA-ARTIGAS REVDAT 2 23-JAN-13 3UA7 1 JRNL REVDAT 1 25-JUL-12 3UA7 0 JRNL AUTH J.M.MARTIN-GARCIA,I.LUQUE,J.RUIZ-SANZ,A.CAMARA-ARTIGAS JRNL TITL THE PROMISCUOUS BINDING OF THE FYN SH3 DOMAIN TO A PEPTIDE JRNL TITL 2 FROM THE NS5A PROTEIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1030 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22868769 JRNL DOI 10.1107/S0907444912019798 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 40262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.154 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2146 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2924 ; 1.877 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 7.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.177 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;12.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1682 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1307 ; 3.322 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2100 ; 4.559 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 839 ; 5.818 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 824 ; 7.904 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2146 ; 3.554 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 85 A 114 2 REMARK 3 1 B 85 B 114 2 REMARK 3 1 C 85 C 114 2 REMARK 3 1 D 85 D 114 2 REMARK 3 2 A 118 A 140 5 REMARK 3 2 B 118 B 140 5 REMARK 3 2 C 118 C 140 5 REMARK 3 2 D 118 D 140 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 120 ; 0.230 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 B (A): 120 ; 0.220 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 C (A): 120 ; 0.230 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 D (A): 120 ; 0.240 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 223 ; 0.510 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 223 ; 0.850 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 223 ; 0.640 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 223 ; 0.760 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 93 ; 0.630 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 93 ; 0.500 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 93 ; 0.460 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 93 ; 0.490 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 120 ; 3.150 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 120 ; 3.680 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 120 ; 3.470 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 120 ; 3.340 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 223 ; 3.380 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 223 ; 3.630 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 223 ; 3.670 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 223 ; 3.280 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 93 ; 3.360 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 93 ; 3.980 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 93 ; 3.710 ;10.000 REMARK 3 LOOSE THERMAL 1 D (A**2): 93 ; 3.350 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3UA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB068500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 49.526 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1SHF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, 10 MM ZINC REMARK 280 CHLORIDE, 0.1 M TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.79500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.69500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.39750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.69500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.19250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.69500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.39750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.69500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 139.19250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 40 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 80 REMARK 465 MET B 80 REMARK 465 MET C 80 REMARK 465 GLY C 81 REMARK 465 THR C 82 REMARK 465 ASP C 142 REMARK 465 SER C 143 REMARK 465 MET D 80 REMARK 465 GLY D 81 REMARK 465 THR D 82 REMARK 465 ARG E 9 REMARK 465 LYS E 10 REMARK 465 ARG E 11 REMARK 465 ACE F 0 REMARK 465 ARG F 9 REMARK 465 LYS F 10 REMARK 465 ARG F 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 116 53.38 -107.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT C 144 O2 REMARK 620 2 GLU C 107 OE2 111.8 REMARK 620 3 HIS C 104 ND1 119.4 107.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT D 1 O1 REMARK 620 2 GLU D 107 OE2 116.2 REMARK 620 3 HIS D 104 ND1 115.8 102.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 145 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 83 O REMARK 620 2 GLY B 83 O 167.0 REMARK 620 3 HOH A 167 O 85.1 82.5 REMARK 620 4 HOH D 66 O 107.3 78.6 131.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 145 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHF RELATED DB: PDB REMARK 900 RELATED ID: 3UA6 RELATED DB: PDB DBREF 3UA7 A 81 143 UNP P06241 FYN_HUMAN 81 143 DBREF 3UA7 B 81 143 UNP P06241 FYN_HUMAN 81 143 DBREF 3UA7 C 81 143 UNP P06241 FYN_HUMAN 81 143 DBREF 3UA7 D 81 143 UNP P06241 FYN_HUMAN 81 143 DBREF 3UA7 E 1 11 UNP Q9YKI6 Q9YKI6_9HEPC 350 360 DBREF 3UA7 F 1 11 UNP Q9YKI6 Q9YKI6_9HEPC 350 360 SEQADV 3UA7 MET A 80 UNP P06241 INITIATING METHIONINE SEQADV 3UA7 MET B 80 UNP P06241 INITIATING METHIONINE SEQADV 3UA7 MET C 80 UNP P06241 INITIATING METHIONINE SEQADV 3UA7 MET D 80 UNP P06241 INITIATING METHIONINE SEQADV 3UA7 ACE E 0 UNP Q9YKI6 ACETYLATION SEQADV 3UA7 ACE F 0 UNP Q9YKI6 ACETYLATION SEQRES 1 A 64 MET GLY THR GLY VAL THR LEU PHE VAL ALA LEU TYR ASP SEQRES 2 A 64 TYR GLU ALA ARG THR GLU ASP ASP LEU SER PHE HIS LYS SEQRES 3 A 64 GLY GLU LYS PHE GLN ILE LEU ASN SER SER GLU GLY ASP SEQRES 4 A 64 TRP TRP GLU ALA ARG SER LEU THR THR GLY GLU THR GLY SEQRES 5 A 64 TYR ILE PRO SER ASN TYR VAL ALA PRO VAL ASP SER SEQRES 1 B 64 MET GLY THR GLY VAL THR LEU PHE VAL ALA LEU TYR ASP SEQRES 2 B 64 TYR GLU ALA ARG THR GLU ASP ASP LEU SER PHE HIS LYS SEQRES 3 B 64 GLY GLU LYS PHE GLN ILE LEU ASN SER SER GLU GLY ASP SEQRES 4 B 64 TRP TRP GLU ALA ARG SER LEU THR THR GLY GLU THR GLY SEQRES 5 B 64 TYR ILE PRO SER ASN TYR VAL ALA PRO VAL ASP SER SEQRES 1 C 64 MET GLY THR GLY VAL THR LEU PHE VAL ALA LEU TYR ASP SEQRES 2 C 64 TYR GLU ALA ARG THR GLU ASP ASP LEU SER PHE HIS LYS SEQRES 3 C 64 GLY GLU LYS PHE GLN ILE LEU ASN SER SER GLU GLY ASP SEQRES 4 C 64 TRP TRP GLU ALA ARG SER LEU THR THR GLY GLU THR GLY SEQRES 5 C 64 TYR ILE PRO SER ASN TYR VAL ALA PRO VAL ASP SER SEQRES 1 D 64 MET GLY THR GLY VAL THR LEU PHE VAL ALA LEU TYR ASP SEQRES 2 D 64 TYR GLU ALA ARG THR GLU ASP ASP LEU SER PHE HIS LYS SEQRES 3 D 64 GLY GLU LYS PHE GLN ILE LEU ASN SER SER GLU GLY ASP SEQRES 4 D 64 TRP TRP GLU ALA ARG SER LEU THR THR GLY GLU THR GLY SEQRES 5 D 64 TYR ILE PRO SER ASN TYR VAL ALA PRO VAL ASP SER SEQRES 1 E 12 ACE ALA PRO PRO ILE PRO PRO PRO ARG ARG LYS ARG SEQRES 1 F 12 ACE ALA PRO PRO ILE PRO PRO PRO ARG ARG LYS ARG HET ACE E 0 3 HET GOL A 1 6 HET CL A 144 1 HET NA A 145 1 HET ZN C 1 1 HET FMT C 144 3 HET ZN D 2 1 HET FMT D 1 3 HETNAM ACE ACETYL GROUP HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ACE C2 H4 O FORMUL 7 GOL C3 H8 O3 FORMUL 8 CL CL 1- FORMUL 9 NA NA 1+ FORMUL 10 ZN 2(ZN 2+) FORMUL 11 FMT 2(C H2 O2) FORMUL 14 HOH *173(H2 O) SHEET 1 A 5 THR A 130 PRO A 134 0 SHEET 2 A 5 TRP A 119 SER A 124 -1 N ALA A 122 O GLY A 131 SHEET 3 A 5 LYS A 108 ASN A 113 -1 N LEU A 112 O GLU A 121 SHEET 4 A 5 PHE A 87 ALA A 89 -1 N PHE A 87 O PHE A 109 SHEET 5 A 5 VAL A 138 PRO A 140 -1 O ALA A 139 N VAL A 88 SHEET 1 B 5 THR B 130 PRO B 134 0 SHEET 2 B 5 TRP B 119 SER B 124 -1 N ALA B 122 O GLY B 131 SHEET 3 B 5 LYS B 108 ASN B 113 -1 N GLN B 110 O ARG B 123 SHEET 4 B 5 PHE B 87 ALA B 89 -1 N PHE B 87 O PHE B 109 SHEET 5 B 5 VAL B 138 PRO B 140 -1 O ALA B 139 N VAL B 88 SHEET 1 C 5 THR C 130 PRO C 134 0 SHEET 2 C 5 TRP C 119 SER C 124 -1 N ALA C 122 O GLY C 131 SHEET 3 C 5 LYS C 108 ASN C 113 -1 N LEU C 112 O GLU C 121 SHEET 4 C 5 PHE C 87 ALA C 89 -1 N PHE C 87 O PHE C 109 SHEET 5 C 5 VAL C 138 PRO C 140 -1 O ALA C 139 N VAL C 88 SHEET 1 D 5 THR D 130 PRO D 134 0 SHEET 2 D 5 TRP D 119 SER D 124 -1 N ALA D 122 O GLY D 131 SHEET 3 D 5 LYS D 108 ASN D 113 -1 N LEU D 112 O GLU D 121 SHEET 4 D 5 LEU D 86 ALA D 89 -1 N PHE D 87 O PHE D 109 SHEET 5 D 5 VAL D 138 PRO D 140 -1 O ALA D 139 N VAL D 88 LINK C ACE E 0 N ALA E 1 1555 1555 1.33 LINK ZN ZN C 1 O2 FMT C 144 1555 1555 1.86 LINK ZN ZN D 2 O1 FMT D 1 1555 1555 1.95 LINK OE2 GLU C 107 ZN ZN C 1 1555 1555 1.99 LINK OE2 GLU D 107 ZN ZN D 2 1555 1555 2.00 LINK ND1 HIS D 104 ZN ZN D 2 1555 1555 2.06 LINK ND1 HIS C 104 ZN ZN C 1 1555 1555 2.09 LINK O GLY A 83 NA NA A 145 1555 1555 2.16 LINK O GLY B 83 NA NA A 145 1555 1555 2.37 LINK NA NA A 145 O HOH A 167 1555 1555 2.50 LINK NA NA A 145 O HOH D 66 1555 1555 2.63 SITE 1 AC1 4 HIS B 104 HIS C 104 GLU C 107 FMT C 144 SITE 1 AC2 4 HIS A 104 FMT D 1 HIS D 104 GLU D 107 SITE 1 AC3 4 THR A 97 ASP A 100 TRP A 119 TYR A 132 SITE 1 AC4 8 HIS A 104 ZN D 2 HOH D 75 SER D 102 SITE 2 AC4 8 PHE D 103 HIS D 104 GLU D 107 HOH D 158 SITE 1 AC5 7 HIS B 104 ZN C 1 SER C 102 PHE C 103 SITE 2 AC5 7 HIS C 104 GLU C 107 HOH C 154 SITE 1 AC6 4 THR A 127 VAL D 88 GLY D 106 LYS D 108 SITE 1 AC7 4 GLY A 83 HOH A 167 GLY B 83 HOH D 66 CRYST1 51.390 51.390 185.590 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005388 0.00000 MASTER 417 0 8 0 20 0 9 6 0 0 0 22 END