HEADER HYDROLASE/HYDROLASE INHIBITOR 01-AUG-11 3T8V TITLE A BESTATIN-BASED CHEMICAL BIOLOGY STRATEGY REVEALS DISTINCT ROLES FOR TITLE 2 MALARIA M1- AND M17-FAMILY AMINOPEPTIDASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 196-1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 STRAIN: FCB1/COLUMBIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS M1 ALANYL-AMINOPEPTIDASE, PROTEASE, METALLO-AMINOPEPTIDASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.MCGOWAN,M.KLEMBA,D.C.GREEBAUM REVDAT 1 28-SEP-11 3T8V 0 JRNL AUTH M.B.HARBUT,G.VELMOUROUGANE,S.DALAL,G.REISS,J.C.WHISSTOCK, JRNL AUTH 2 O.ONDER,D.BRISSON,S.MCGOWAN,M.KLEMBA,D.C.GREENBAUM JRNL TITL BESTATIN-BASED CHEMICAL BIOLOGY STRATEGY REVEALS DISTINCT JRNL TITL 2 ROLES FOR MALARIA M1- AND M17-FAMILY AMINOPEPTIDASES JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 E526 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21844374 JRNL DOI 10.1073/PNAS.1105601108 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 90005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4499 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6395 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2095 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6120 REMARK 3 BIN R VALUE (WORKING SET) : 0.2083 REMARK 3 BIN FREE R VALUE : 0.2374 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 275 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 1007 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59920 REMARK 3 B22 (A**2) : 3.19160 REMARK 3 B33 (A**2) : -1.59240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7469 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10112 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2611 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 202 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1060 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7428 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 977 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9545 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 196 A 1084 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5824 4.1033 10.3329 REMARK 3 T TENSOR REMARK 3 T11: -0.0530 T22: -0.0466 REMARK 3 T33: -0.0634 T12: -0.0011 REMARK 3 T13: 0.0059 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.2764 L22: 0.5087 REMARK 3 L33: 0.3589 L12: -0.0574 REMARK 3 L13: -0.0001 L23: 0.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0063 S13: 0.0276 REMARK 3 S21: -0.0017 S22: 0.0071 S23: -0.0047 REMARK 3 S31: -0.0178 S32: -0.0044 S33: 0.0261 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB067183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90083 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22%(V/V) PEG8000, 10%(V/V) GLYCEROL, REMARK 280 0.1M TRIS, 0.2M MGCL2, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.77100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.13700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.41050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.13700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.77100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.41050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1085 REMARK 465 HIS A 1086 REMARK 465 HIS A 1087 REMARK 465 HIS A 1088 REMARK 465 HIS A 1089 REMARK 465 HIS A 1090 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ARG A 228 CD NE CZ NH1 NH2 REMARK 470 LYS A 252 CD CE NZ REMARK 470 VAL A 264 CG1 CG2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 LYS A 480 CE NZ REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 GLU A 977 CD OE1 OE2 REMARK 470 LYS A 980 CD CE NZ REMARK 470 ASP A 989 CG OD1 OD2 REMARK 470 LYS A1019 CD CE NZ REMARK 470 LYS A1030 CE NZ REMARK 470 LYS A1048 CD CE NZ REMARK 470 GLN A1066 CD OE1 NE2 REMARK 470 LYS A1075 CE NZ REMARK 470 LYS A1084 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 1041 O HOH A 1234 1.98 REMARK 500 CD GLU A 1041 O HOH A 1234 2.05 REMARK 500 OD2 ASP A 358 O HOH A 1270 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -46.31 -138.54 REMARK 500 LYS A 311 -112.30 60.41 REMARK 500 VAL A 459 -156.01 -121.78 REMARK 500 LEU A 475 -35.37 -135.03 REMARK 500 SER A 549 -70.51 -91.73 REMARK 500 ASN A 912 18.77 59.50 REMARK 500 VAL A 986 -57.64 -123.24 REMARK 500 LYS A 988 -135.03 55.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TRP A 929 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1674 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A1903 DISTANCE = 6.57 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BTJ A 1092 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 GLU A 519 OE1 102.0 REMARK 620 3 HIS A 500 NE2 99.4 106.3 REMARK 620 4 BTJ A1092 O11 104.0 137.6 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1091 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1186 O REMARK 620 2 HOH A1187 O 93.8 REMARK 620 3 HOH A1185 O 85.4 171.9 REMARK 620 4 HOH A1184 O 89.8 90.2 81.7 REMARK 620 5 HOH A1188 O 178.6 86.9 93.7 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 250 O REMARK 620 2 HOH A1176 O 94.8 REMARK 620 3 HOH A1175 O 90.6 84.3 REMARK 620 4 HOH A1177 O 169.5 89.2 99.5 REMARK 620 5 HOH A1174 O 91.6 173.6 95.0 84.6 REMARK 620 6 HOH A 130 O 86.3 90.3 173.6 83.9 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1182 O REMARK 620 2 HOH A1183 O 88.6 REMARK 620 3 HOH A1181 O 91.4 91.4 REMARK 620 4 HOH A1220 O 91.4 87.0 176.8 REMARK 620 5 HOH A1814 O 176.2 87.6 88.4 88.7 REMARK 620 6 HOH A1382 O 99.9 167.5 97.5 83.6 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1091 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTJ A 1092 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 RELATED ID: 3T8W RELATED DB: PDB DBREF 3T8V A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 3T8V GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 3T8V GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 3T8V PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 3T8V GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 3T8V ALA A 572 UNP O96935 GLU 572 ENGINEERED MUTATION SEQADV 3T8V GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 3T8V GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 3T8V GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQADV 3T8V HIS A 1085 UNP O96935 EXPRESSION TAG SEQADV 3T8V HIS A 1086 UNP O96935 EXPRESSION TAG SEQADV 3T8V HIS A 1087 UNP O96935 EXPRESSION TAG SEQADV 3T8V HIS A 1088 UNP O96935 EXPRESSION TAG SEQADV 3T8V HIS A 1089 UNP O96935 EXPRESSION TAG SEQADV 3T8V HIS A 1090 UNP O96935 EXPRESSION TAG SEQRES 1 A 895 PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER GLY SEQRES 2 A 895 PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE HIS SEQRES 3 A 895 ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET ASP SEQRES 4 A 895 ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE ASP SEQRES 5 A 895 GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN ASN SEQRES 6 A 895 LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP ASN SEQRES 7 A 895 GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SER SEQRES 8 A 895 LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO GLU SEQRES 9 A 895 THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS ASN SEQRES 10 A 895 ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG ARG SEQRES 11 A 895 ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA LYS SEQRES 12 A 895 TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR PRO SEQRES 13 A 895 VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE GLU SEQRES 14 A 895 ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP PRO SEQRES 15 A 895 PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA GLY SEQRES 16 A 895 ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS TYR SEQRES 17 A 895 THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU GLU SEQRES 18 A 895 LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS LEU SEQRES 19 A 895 LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY LEU SEQRES 20 A 895 GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SER SEQRES 21 A 895 ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU ASN SEQRES 22 A 895 ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS ASN SEQRES 23 A 895 SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL VAL SEQRES 24 A 895 GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG VAL SEQRES 25 A 895 THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU GLY SEQRES 26 A 895 LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU MET SEQRES 27 A 895 THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP LEU SEQRES 28 A 895 LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO LEU SEQRES 29 A 895 SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET ALA SEQRES 30 A 895 ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER GLU SEQRES 31 A 895 VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU TYR SEQRES 32 A 895 TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN ASP SEQRES 33 A 895 GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA MET SEQRES 34 A 895 GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER ALA SEQRES 35 A 895 ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER GLY SEQRES 36 A 895 THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA GLU SEQRES 37 A 895 LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR LYS SEQRES 38 A 895 PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE ILE SEQRES 39 A 895 PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY LYS SEQRES 40 A 895 GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS GLU SEQRES 41 A 895 SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS PRO SEQRES 42 A 895 ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL TYR SEQRES 43 A 895 ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU LEU SEQRES 44 A 895 LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SER SEQRES 45 A 895 CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN TYR SEQRES 46 A 895 ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SER SEQRES 47 A 895 PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP ALA SEQRES 48 A 895 ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA GLY SEQRES 49 A 895 PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG TYR SEQRES 50 A 895 ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL LEU SEQRES 51 A 895 ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY ASP SEQRES 52 A 895 LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER LEU SEQRES 53 A 895 GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP GLU SEQRES 54 A 895 SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR LEU SEQRES 55 A 895 ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN TYR SEQRES 56 A 895 PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SER SEQRES 57 A 895 PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SER SEQRES 58 A 895 ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS THR SEQRES 59 A 895 TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN GLU SEQRES 60 A 895 TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP ILE SEQRES 61 A 895 TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU LYS SEQRES 62 A 895 ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR LEU SEQRES 63 A 895 PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SER SEQRES 64 A 895 GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR LYS SEQRES 65 A 895 THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU CYS SEQRES 66 A 895 GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS ARG SEQRES 67 A 895 GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU GLN SEQRES 68 A 895 GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU LEU SEQRES 69 A 895 ARG LEU THR ASN LYS HIS HIS HIS HIS HIS HIS HET ZN A 1 1 HET MG A1091 1 HET MG A 2 1 HET MG A 3 1 HET BTJ A1092 40 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM BTJ N-[(2-{2-[(N-{(2S,3R)-3-AMINO-4-[4-(BENZYLOXY)PHENYL]- HETNAM 2 BTJ 2-HYDROXYBUTANOYL}-L-ALANYL)AMINO]ETHOXY}ETHOXY) HETNAM 3 BTJ ACETYL]-4-BENZOYL-L-PHENYLALANYL-N~6~-HEX-5- HETNAM 4 BTJ YNOYLLYSINAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 MG 3(MG 2+) FORMUL 6 BTJ C54 H67 N7 O11 FORMUL 7 HOH *1007(H2 O) HELIX 1 1 LYS A 202 TYR A 204 5 3 HELIX 2 2 SER A 280 VAL A 283 5 4 HELIX 3 3 HIS A 297 ASN A 301 5 5 HELIX 4 4 GLY A 322 ILE A 326 5 5 HELIX 5 5 PRO A 381 PHE A 385 5 5 HELIX 6 6 LYS A 417 LYS A 421 5 5 HELIX 7 7 LEU A 422 GLY A 441 1 20 HELIX 8 8 ASN A 473 LEU A 475 5 3 HELIX 9 9 ASP A 484 HIS A 500 1 17 HELIX 10 10 ASP A 511 PHE A 513 5 3 HELIX 11 11 GLN A 514 LYS A 535 1 22 HELIX 12 12 VAL A 537 SER A 556 1 20 HELIX 13 13 SER A 570 TYR A 575 5 6 HELIX 14 14 THR A 576 ASP A 611 1 36 HELIX 15 15 THR A 616 ALA A 633 1 18 HELIX 16 16 ASN A 640 TYR A 642 5 3 HELIX 17 17 LEU A 643 GLN A 648 1 6 HELIX 18 18 THR A 747 ASP A 758 1 12 HELIX 19 19 ASP A 760 GLU A 789 1 30 HELIX 20 20 ASN A 800 GLU A 812 1 13 HELIX 21 21 ASP A 817 VAL A 825 1 9 HELIX 22 22 GLN A 829 ILE A 834 1 6 HELIX 23 23 ASN A 835 VAL A 837 5 3 HELIX 24 24 ASP A 841 LEU A 871 1 31 HELIX 25 25 LEU A 871 ASP A 876 1 6 HELIX 26 26 ASP A 888 ALA A 908 1 21 HELIX 27 27 ASN A 912 SER A 921 1 10 HELIX 28 28 TYR A 925 SER A 936 1 12 HELIX 29 29 ALA A 937 PHE A 939 5 3 HELIX 30 30 LYS A 941 LYS A 954 1 14 HELIX 31 31 ASP A 956 SER A 970 1 15 HELIX 32 32 ASP A 974 VAL A 986 1 13 HELIX 33 33 ASN A 992 ASN A 1005 1 14 HELIX 34 34 ASN A 1006 HIS A 1011 1 6 HELIX 35 35 GLY A 1015 LYS A 1030 1 16 HELIX 36 36 ASN A 1032 LEU A 1039 1 8 HELIX 37 37 CYS A 1040 LEU A 1049 5 10 HELIX 38 38 ASP A 1050 GLN A 1066 1 17 HELIX 39 39 SER A 1071 THR A 1082 1 12 SHEET 1 A 2 HIS A 199 TYR A 200 0 SHEET 2 A 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 B 8 LYS A 261 LYS A 262 0 SHEET 2 B 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 B 8 PHE A 288 ILE A 296 -1 O SER A 291 N SER A 257 SHEET 4 B 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 B 8 PHE A 209 ILE A 220 -1 N ASN A 219 O ILE A 226 SHEET 6 B 8 ALA A 337 ASP A 346 1 O THR A 342 N ILE A 218 SHEET 7 B 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 B 8 ASP A 358 ILE A 365 -1 N PHE A 363 O GLY A 371 SHEET 1 C 3 LEU A 244 ASP A 247 0 SHEET 2 C 3 PHE A 275 ILE A 278 -1 O ILE A 278 N LEU A 244 SHEET 3 C 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 D 4 GLY A 306 SER A 310 0 SHEET 2 D 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 D 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 D 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 E 5 LEU A 392 ILE A 400 0 SHEET 2 E 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 E 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 E 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 E 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 F 2 THR A 508 LEU A 509 0 SHEET 2 F 2 THR A 614 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 G 4 SER A 716 PHE A 721 0 SHEET 2 G 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 G 4 HIS A 653 ASP A 661 -1 N HIS A 653 O TYR A 674 SHEET 4 G 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 H 3 THR A 708 LEU A 712 0 SHEET 2 H 3 ILE A 689 ILE A 696 -1 N VAL A 693 O THR A 708 SHEET 3 H 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK NE2 HIS A 496 ZN ZN A 1 1555 1555 1.98 LINK MG MG A1091 O HOH A1186 1555 1555 1.98 LINK O GLY A 250 MG MG A 2 1555 1555 2.00 LINK MG MG A 2 O HOH A1176 1555 1555 2.01 LINK MG MG A 2 O HOH A1175 1555 1555 2.02 LINK OE1 GLU A 519 ZN ZN A 1 1555 1555 2.03 LINK NE2 HIS A 500 ZN ZN A 1 1555 1555 2.03 LINK MG MG A 3 O HOH A1182 1555 1555 2.04 LINK MG MG A 2 O HOH A1177 1555 1555 2.07 LINK MG MG A 3 O HOH A1183 1555 1555 2.09 LINK MG MG A 2 O HOH A1174 1555 1555 2.12 LINK MG MG A1091 O HOH A1187 1555 1555 2.14 LINK MG MG A 3 O HOH A1181 1555 1555 2.15 LINK MG MG A1091 O HOH A1185 1555 1555 2.21 LINK MG MG A 2 O HOH A 130 1555 1555 2.22 LINK MG MG A 3 O HOH A1220 1555 1555 2.29 LINK MG MG A1091 O HOH A1184 1555 1555 2.29 LINK MG MG A1091 O HOH A1188 1555 1555 2.32 LINK ZN ZN A 1 O11 BTJ A1092 1555 1555 2.39 LINK MG MG A 3 O HOH A1814 1555 1555 2.43 LINK MG MG A 3 O HOH A1382 1555 1555 2.43 CISPEP 1 GLU A 319 ALA A 320 0 -1.90 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 BTJ A1092 SITE 1 AC2 6 GLU A 957 HOH A1184 HOH A1185 HOH A1186 SITE 2 AC2 6 HOH A1187 HOH A1188 SITE 1 AC3 6 HOH A 130 GLY A 250 HOH A1174 HOH A1175 SITE 2 AC3 6 HOH A1176 HOH A1177 SITE 1 AC4 6 HOH A1181 HOH A1182 HOH A1183 HOH A1220 SITE 2 AC4 6 HOH A1382 HOH A1814 SITE 1 AC5 19 ZN A 1 GLN A 317 GLU A 319 VAL A 459 SITE 2 AC5 19 GLY A 460 ALA A 461 MET A 462 GLU A 463 SITE 3 AC5 19 ARG A 489 HIS A 496 GLU A 497 HIS A 500 SITE 4 AC5 19 GLU A 519 ALA A 572 TYR A 575 TYR A 580 SITE 5 AC5 19 MET A1034 GLN A1038 HOH A1218 CRYST1 75.542 108.821 118.274 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008455 0.00000 MASTER 424 0 5 39 31 0 12 6 0 0 0 69 END