HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-AUG-11 3T8M TITLE RATIONAL DESIGN OF PI3K-ALPHA INHIBITORS THAT EXHIBIT SELECTIVITY OVER TITLE 2 THE PI3K-BETA ISOFORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT GAMMA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 144-1102; COMPND 6 SYNONYM: PI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PTDINS-3-KINASE COMPND 7 SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE 110 KDA COMPND 8 CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, P120- COMPND 9 PI3K; COMPND 10 EC: 2.7.1.153; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3CG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE P110, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,C.WIESMANN REVDAT 3 08-NOV-17 3T8M 1 REMARK REVDAT 2 22-AUG-12 3T8M 1 REMARK REVDAT 1 16-NOV-11 3T8M 0 JRNL AUTH T.HEFFRON,B.WEI,A.G.OLIVERO,S.T.STABEN,V.TSUI,S.DO,J.DOTSON, JRNL AUTH 2 A.FOLKES,A.GOLDSMITH,R.GOLDSMITH,J.GUNZNER,J.LESNICK, JRNL AUTH 3 C.LEWIS,S.MATHIEU,J.NONOMIYA,D.P.SUTHERLIN,N.C.WAN,S.WANG, JRNL AUTH 4 C.WEISMANN,B.ZHU JRNL TITL RATIONAL DESIGN OF PI3K-ALPHA INHIBITORS THAT EXHIBIT JRNL TITL 2 SELECTIVITY OVER THE PI3K-BETA ISOFORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_833 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8558 - 5.6824 0.99 2846 145 0.1757 0.1948 REMARK 3 2 5.6824 - 4.5279 1.00 2817 152 0.1794 0.2491 REMARK 3 3 4.5279 - 3.9607 1.00 2779 151 0.1728 0.2126 REMARK 3 4 3.9607 - 3.6009 1.00 2796 158 0.2017 0.2302 REMARK 3 5 3.6009 - 3.3441 1.00 2787 155 0.2271 0.2996 REMARK 3 6 3.3441 - 3.1478 1.00 2795 134 0.2460 0.3131 REMARK 3 7 3.1478 - 2.9907 1.00 2806 154 0.2643 0.3397 REMARK 3 8 2.9907 - 2.8609 1.00 2754 155 0.2595 0.3431 REMARK 3 9 2.8609 - 2.7511 1.00 2775 143 0.2679 0.3473 REMARK 3 10 2.7511 - 2.6563 1.00 2789 130 0.2896 0.3445 REMARK 3 11 2.6563 - 2.5735 1.00 2799 138 0.2985 0.4060 REMARK 3 12 2.5735 - 2.5001 1.00 2783 129 0.2932 0.3583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 61.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07230 REMARK 3 B22 (A**2) : 1.26120 REMARK 3 B33 (A**2) : -1.33350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.99520 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 7000 REMARK 3 ANGLE : 1.687 9473 REMARK 3 CHIRALITY : 0.108 1059 REMARK 3 PLANARITY : 0.011 1202 REMARK 3 DIHEDRAL : 17.360 2601 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 143:483) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2312 37.2027 23.0263 REMARK 3 T TENSOR REMARK 3 T11: 0.4923 T22: 0.1956 REMARK 3 T33: 0.6332 T12: -0.0321 REMARK 3 T13: 0.0124 T23: -0.1019 REMARK 3 L TENSOR REMARK 3 L11: 4.6224 L22: 1.4004 REMARK 3 L33: 2.7462 L12: -0.8112 REMARK 3 L13: 0.5438 L23: -0.5814 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.1376 S13: -1.0650 REMARK 3 S21: 0.0648 S22: 0.1608 S23: 0.4354 REMARK 3 S31: 0.0226 S32: 0.0054 S33: 0.0319 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 484:623) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7898 39.1946 35.4833 REMARK 3 T TENSOR REMARK 3 T11: 0.5633 T22: 0.6753 REMARK 3 T33: 0.4941 T12: 0.0193 REMARK 3 T13: 0.0123 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 3.2726 L22: 1.7936 REMARK 3 L33: 1.6765 L12: -0.5345 REMARK 3 L13: 0.5826 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.2437 S13: -0.3856 REMARK 3 S21: 0.2377 S22: 0.1215 S23: -0.0200 REMARK 3 S31: 0.1830 S32: 0.4505 S33: 0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 624:1038) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9759 53.7214 25.9357 REMARK 3 T TENSOR REMARK 3 T11: 0.6403 T22: 0.3393 REMARK 3 T33: 0.4430 T12: 0.1133 REMARK 3 T13: 0.0961 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 6.0394 L22: 2.4354 REMARK 3 L33: 2.3308 L12: -1.8048 REMARK 3 L13: 1.3985 L23: -0.7739 REMARK 3 S TENSOR REMARK 3 S11: -0.1825 S12: 0.0040 S13: 0.3469 REMARK 3 S21: 0.4357 S22: 0.2138 S23: 0.2839 REMARK 3 S31: -0.6609 S32: -0.4559 S33: -0.0227 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1039:1091) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5124 67.9381 36.8394 REMARK 3 T TENSOR REMARK 3 T11: 1.5891 T22: 0.6709 REMARK 3 T33: 1.4732 T12: -0.0017 REMARK 3 T13: -0.2612 T23: -0.1853 REMARK 3 L TENSOR REMARK 3 L11: 1.1012 L22: 0.3419 REMARK 3 L33: 0.4384 L12: -0.0209 REMARK 3 L13: 0.1581 L23: -0.4370 REMARK 3 S TENSOR REMARK 3 S11: -0.7830 S12: -0.4767 S13: 2.2740 REMARK 3 S21: 0.7260 S22: 0.0356 S23: -0.2801 REMARK 3 S31: -1.5875 S32: 0.3389 S33: -0.1781 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.46500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 24.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 0.2M NH4SO4, 0.1M TRIS-HCL REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.60950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.82550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.60950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.82550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 254 REMARK 465 LYS A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 MET A 259 REMARK 465 ASP A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 GLU A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 SER A 266 REMARK 465 TRP A 323 REMARK 465 PRO A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 CYS A 329 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 TYR A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 HIS A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 VAL A 349 REMARK 465 PHE A 350 REMARK 465 THR A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 LEU A 354 REMARK 465 TRP A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 PRO A 439 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 VAL A 458 REMARK 465 GLN A 459 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 SER A 496 REMARK 465 TYR A 523 REMARK 465 CYS A 524 REMARK 465 LEU A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 GLN A 533 REMARK 465 PRO A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 GLY A 540 REMARK 465 ASP A 541 REMARK 465 ARG A 542 REMARK 465 VAL A 543 REMARK 465 ILE A 968 REMARK 465 LEU A 969 REMARK 465 GLY A 970 REMARK 465 ASN A 971 REMARK 465 TYR A 972 REMARK 465 LYS A 973 REMARK 465 SER A 974 REMARK 465 PHE A 975 REMARK 465 LEU A 976 REMARK 465 GLY A 977 REMARK 465 ILE A 978 REMARK 465 ASN A 979 REMARK 465 LYS A 980 REMARK 465 LEU A 1092 REMARK 465 GLY A 1093 REMARK 465 ILE A 1094 REMARK 465 LYS A 1095 REMARK 465 GLN A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 LYS A 1099 REMARK 465 HIS A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1102 REMARK 465 HIS A 1103 REMARK 465 HIS A 1104 REMARK 465 HIS A 1105 REMARK 465 HIS A 1106 REMARK 465 HIS A 1107 REMARK 465 HIS A 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 143 CG SD CE REMARK 470 GLU A 322 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 705 OD1 ASP A 837 1.90 REMARK 500 OD1 ASP A 819 OG1 THR A 821 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 526 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU A 551 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 684 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 684 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 712 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 SER A 777 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 ILE A 870 CG1 - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 199 53.55 31.99 REMARK 500 ARG A 226 87.39 -158.31 REMARK 500 SER A 227 -15.39 64.96 REMARK 500 THR A 228 -71.60 -151.01 REMARK 500 PHE A 248 -71.13 -116.20 REMARK 500 MET A 252 -73.26 -127.22 REMARK 500 ASP A 269 27.50 -76.65 REMARK 500 ASP A 278 42.59 -84.98 REMARK 500 ARG A 375 -86.53 -117.42 REMARK 500 ASN A 376 -74.05 -138.87 REMARK 500 ILE A 527 74.13 57.45 REMARK 500 ALA A 545 92.24 60.81 REMARK 500 PHE A 578 32.38 -91.62 REMARK 500 ALA A 754 -156.68 -78.24 REMARK 500 GLU A 755 56.07 -97.25 REMARK 500 LYS A 756 105.77 69.96 REMARK 500 ASP A 758 112.73 47.61 REMARK 500 SER A 760 92.81 76.44 REMARK 500 ASP A 788 70.68 -150.51 REMARK 500 LYS A 809 74.88 -114.04 REMARK 500 THR A 857 -7.94 -59.24 REMARK 500 VAL A 896 -113.98 48.24 REMARK 500 LYS A1001 -165.31 -114.89 REMARK 500 SER A1003 157.28 174.51 REMARK 500 PRO A1040 -164.73 -78.62 REMARK 500 SER A1044 -3.46 -59.99 REMARK 500 LYS A1045 -81.05 -117.94 REMARK 500 PHE A1087 -32.50 72.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 756 TYR A 757 58.85 REMARK 500 TYR A 757 ASP A 758 77.12 REMARK 500 VAL A 759 SER A 760 57.49 REMARK 500 ASN A 776 SER A 777 -45.90 REMARK 500 SER A 777 GLN A 778 102.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3T8 A 1 DBREF 3T8M A 144 1102 UNP P48736 PK3CG_HUMAN 144 1102 SEQADV 3T8M MET A 143 UNP P48736 EXPRESSION TAG SEQADV 3T8M HIS A 1103 UNP P48736 EXPRESSION TAG SEQADV 3T8M HIS A 1104 UNP P48736 EXPRESSION TAG SEQADV 3T8M HIS A 1105 UNP P48736 EXPRESSION TAG SEQADV 3T8M HIS A 1106 UNP P48736 EXPRESSION TAG SEQADV 3T8M HIS A 1107 UNP P48736 EXPRESSION TAG SEQADV 3T8M HIS A 1108 UNP P48736 EXPRESSION TAG SEQRES 1 A 966 MET SER GLU GLU SER GLN ALA PHE GLN ARG GLN LEU THR SEQRES 2 A 966 ALA LEU ILE GLY TYR ASP VAL THR ASP VAL SER ASN VAL SEQRES 3 A 966 HIS ASP ASP GLU LEU GLU PHE THR ARG ARG GLY LEU VAL SEQRES 4 A 966 THR PRO ARG MET ALA GLU VAL ALA SER ARG ASP PRO LYS SEQRES 5 A 966 LEU TYR ALA MET HIS PRO TRP VAL THR SER LYS PRO LEU SEQRES 6 A 966 PRO GLU TYR LEU TRP LYS LYS ILE ALA ASN ASN CYS ILE SEQRES 7 A 966 PHE ILE VAL ILE HIS ARG SER THR THR SER GLN THR ILE SEQRES 8 A 966 LYS VAL SER PRO ASP ASP THR PRO GLY ALA ILE LEU GLN SEQRES 9 A 966 SER PHE PHE THR LYS MET ALA LYS LYS LYS SER LEU MET SEQRES 10 A 966 ASP ILE PRO GLU SER GLN SER GLU GLN ASP PHE VAL LEU SEQRES 11 A 966 ARG VAL CYS GLY ARG ASP GLU TYR LEU VAL GLY GLU THR SEQRES 12 A 966 PRO ILE LYS ASN PHE GLN TRP VAL ARG HIS CYS LEU LYS SEQRES 13 A 966 ASN GLY GLU GLU ILE HIS VAL VAL LEU ASP THR PRO PRO SEQRES 14 A 966 ASP PRO ALA LEU ASP GLU VAL ARG LYS GLU GLU TRP PRO SEQRES 15 A 966 LEU VAL ASP ASP CYS THR GLY VAL THR GLY TYR HIS GLU SEQRES 16 A 966 GLN LEU THR ILE HIS GLY LYS ASP HIS GLU SER VAL PHE SEQRES 17 A 966 THR VAL SER LEU TRP ASP CYS ASP ARG LYS PHE ARG VAL SEQRES 18 A 966 LYS ILE ARG GLY ILE ASP ILE PRO VAL LEU PRO ARG ASN SEQRES 19 A 966 THR ASP LEU THR VAL PHE VAL GLU ALA ASN ILE GLN HIS SEQRES 20 A 966 GLY GLN GLN VAL LEU CYS GLN ARG ARG THR SER PRO LYS SEQRES 21 A 966 PRO PHE THR GLU GLU VAL LEU TRP ASN VAL TRP LEU GLU SEQRES 22 A 966 PHE SER ILE LYS ILE LYS ASP LEU PRO LYS GLY ALA LEU SEQRES 23 A 966 LEU ASN LEU GLN ILE TYR CYS GLY LYS ALA PRO ALA LEU SEQRES 24 A 966 SER SER LYS ALA SER ALA GLU SER PRO SER SER GLU SER SEQRES 25 A 966 LYS GLY LYS VAL GLN LEU LEU TYR TYR VAL ASN LEU LEU SEQRES 26 A 966 LEU ILE ASP HIS ARG PHE LEU LEU ARG ARG GLY GLU TYR SEQRES 27 A 966 VAL LEU HIS MET TRP GLN ILE SER GLY LYS GLY GLU ASP SEQRES 28 A 966 GLN GLY SER PHE ASN ALA ASP LYS LEU THR SER ALA THR SEQRES 29 A 966 ASN PRO ASP LYS GLU ASN SER MET SER ILE SER ILE LEU SEQRES 30 A 966 LEU ASP ASN TYR CYS HIS PRO ILE ALA LEU PRO LYS HIS SEQRES 31 A 966 GLN PRO THR PRO ASP PRO GLU GLY ASP ARG VAL ARG ALA SEQRES 32 A 966 GLU MET PRO ASN GLN LEU ARG LYS GLN LEU GLU ALA ILE SEQRES 33 A 966 ILE ALA THR ASP PRO LEU ASN PRO LEU THR ALA GLU ASP SEQRES 34 A 966 LYS GLU LEU LEU TRP HIS PHE ARG TYR GLU SER LEU LYS SEQRES 35 A 966 HIS PRO LYS ALA TYR PRO LYS LEU PHE SER SER VAL LYS SEQRES 36 A 966 TRP GLY GLN GLN GLU ILE VAL ALA LYS THR TYR GLN LEU SEQRES 37 A 966 LEU ALA ARG ARG GLU VAL TRP ASP GLN SER ALA LEU ASP SEQRES 38 A 966 VAL GLY LEU THR MET GLN LEU LEU ASP CYS ASN PHE SER SEQRES 39 A 966 ASP GLU ASN VAL ARG ALA ILE ALA VAL GLN LYS LEU GLU SEQRES 40 A 966 SER LEU GLU ASP ASP ASP VAL LEU HIS TYR LEU LEU GLN SEQRES 41 A 966 LEU VAL GLN ALA VAL LYS PHE GLU PRO TYR HIS ASP SER SEQRES 42 A 966 ALA LEU ALA ARG PHE LEU LEU LYS ARG GLY LEU ARG ASN SEQRES 43 A 966 LYS ARG ILE GLY HIS PHE LEU PHE TRP PHE LEU ARG SER SEQRES 44 A 966 GLU ILE ALA GLN SER ARG HIS TYR GLN GLN ARG PHE ALA SEQRES 45 A 966 VAL ILE LEU GLU ALA TYR LEU ARG GLY CYS GLY THR ALA SEQRES 46 A 966 MET LEU HIS ASP PHE THR GLN GLN VAL GLN VAL ILE GLU SEQRES 47 A 966 MET LEU GLN LYS VAL THR LEU ASP ILE LYS SER LEU SER SEQRES 48 A 966 ALA GLU LYS TYR ASP VAL SER SER GLN VAL ILE SER GLN SEQRES 49 A 966 LEU LYS GLN LYS LEU GLU ASN LEU GLN ASN SER GLN LEU SEQRES 50 A 966 PRO GLU SER PHE ARG VAL PRO TYR ASP PRO GLY LEU LYS SEQRES 51 A 966 ALA GLY ALA LEU ALA ILE GLU LYS CYS LYS VAL MET ALA SEQRES 52 A 966 SER LYS LYS LYS PRO LEU TRP LEU GLU PHE LYS CYS ALA SEQRES 53 A 966 ASP PRO THR ALA LEU SER ASN GLU THR ILE GLY ILE ILE SEQRES 54 A 966 PHE LYS HIS GLY ASP ASP LEU ARG GLN ASP MET LEU ILE SEQRES 55 A 966 LEU GLN ILE LEU ARG ILE MET GLU SER ILE TRP GLU THR SEQRES 56 A 966 GLU SER LEU ASP LEU CYS LEU LEU PRO TYR GLY CYS ILE SEQRES 57 A 966 SER THR GLY ASP LYS ILE GLY MET ILE GLU ILE VAL LYS SEQRES 58 A 966 ASP ALA THR THR ILE ALA LYS ILE GLN GLN SER THR VAL SEQRES 59 A 966 GLY ASN THR GLY ALA PHE LYS ASP GLU VAL LEU ASN HIS SEQRES 60 A 966 TRP LEU LYS GLU LYS SER PRO THR GLU GLU LYS PHE GLN SEQRES 61 A 966 ALA ALA VAL GLU ARG PHE VAL TYR SER CYS ALA GLY TYR SEQRES 62 A 966 CYS VAL ALA THR PHE VAL LEU GLY ILE GLY ASP ARG HIS SEQRES 63 A 966 ASN ASP ASN ILE MET ILE THR GLU THR GLY ASN LEU PHE SEQRES 64 A 966 HIS ILE ASP PHE GLY HIS ILE LEU GLY ASN TYR LYS SER SEQRES 65 A 966 PHE LEU GLY ILE ASN LYS GLU ARG VAL PRO PHE VAL LEU SEQRES 66 A 966 THR PRO ASP PHE LEU PHE VAL MET GLY THR SER GLY LYS SEQRES 67 A 966 LYS THR SER PRO HIS PHE GLN LYS PHE GLN ASP ILE CYS SEQRES 68 A 966 VAL LYS ALA TYR LEU ALA LEU ARG HIS HIS THR ASN LEU SEQRES 69 A 966 LEU ILE ILE LEU PHE SER MET MET LEU MET THR GLY MET SEQRES 70 A 966 PRO GLN LEU THR SER LYS GLU ASP ILE GLU TYR ILE ARG SEQRES 71 A 966 ASP ALA LEU THR VAL GLY LYS ASN GLU GLU ASP ALA LYS SEQRES 72 A 966 LYS TYR PHE LEU ASP GLN ILE GLU VAL CYS ARG ASP LYS SEQRES 73 A 966 GLY TRP THR VAL GLN PHE ASN TRP PHE LEU HIS LEU VAL SEQRES 74 A 966 LEU GLY ILE LYS GLN GLY GLU LYS HIS SER ALA HIS HIS SEQRES 75 A 966 HIS HIS HIS HIS HET 3T8 A 1 38 HETNAM 3T8 N~2~-{2-CHLORO-4-[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 3T8 CARBONYL]PHENYL}-N~2~,N~8~-DIMETHYL-4,5- HETNAM 3 3T8 DIHYDROTHIENO[3,2-D][1]BENZOXEPINE-2,8-DICARBOXAMIDE FORMUL 2 3T8 C28 H29 CL N4 O4 S FORMUL 3 HOH *15(H2 O) HELIX 1 1 SER A 144 GLY A 159 1 16 HELIX 2 2 ASP A 171 ARG A 191 1 21 HELIX 3 3 ASP A 192 HIS A 199 1 8 HELIX 4 4 PRO A 208 LYS A 213 1 6 HELIX 5 5 THR A 240 LEU A 245 1 6 HELIX 6 6 LEU A 245 ALA A 253 1 9 HELIX 7 7 PRO A 286 ASN A 289 5 4 HELIX 8 8 PHE A 290 ASN A 299 1 10 HELIX 9 9 ASP A 312 GLU A 317 5 6 HELIX 10 10 LYS A 421 LEU A 423 5 3 HELIX 11 11 ASN A 498 THR A 503 5 6 HELIX 12 12 PRO A 548 THR A 561 1 14 HELIX 13 13 THR A 568 PHE A 578 1 11 HELIX 14 14 PHE A 578 LEU A 583 1 6 HELIX 15 15 LYS A 584 LYS A 587 5 4 HELIX 16 16 ALA A 588 SER A 594 1 7 HELIX 17 17 GLN A 600 ARG A 613 1 14 HELIX 18 18 ARG A 614 GLN A 619 1 6 HELIX 19 19 ASP A 623 LEU A 630 1 8 HELIX 20 20 ASP A 637 GLU A 649 1 13 HELIX 21 21 GLU A 652 VAL A 667 1 16 HELIX 22 22 LYS A 668 GLU A 670 5 3 HELIX 23 23 SER A 675 ASN A 688 1 14 HELIX 24 24 ASN A 688 SER A 706 1 19 HELIX 25 25 TYR A 709 GLY A 725 1 17 HELIX 26 26 GLY A 725 LEU A 752 1 28 HELIX 27 27 SER A 760 ASN A 776 1 17 HELIX 28 28 ILE A 798 CYS A 801 5 4 HELIX 29 29 LEU A 838 THR A 857 1 20 HELIX 30 30 ILE A 888 THR A 895 1 8 HELIX 31 31 GLU A 905 LYS A 914 1 10 HELIX 32 32 THR A 917 LEU A 942 1 26 HELIX 33 33 HIS A 948 ASP A 950 5 3 HELIX 34 34 THR A 988 MET A 995 1 8 HELIX 35 35 SER A 1003 HIS A 1022 1 20 HELIX 36 36 HIS A 1023 MET A 1039 1 17 HELIX 37 37 GLU A 1049 LEU A 1055 1 7 HELIX 38 38 ASN A 1060 GLY A 1079 1 20 HELIX 39 39 TRP A 1080 TRP A 1086 1 7 SHEET 1 A 5 THR A 232 VAL A 235 0 SHEET 2 A 5 ILE A 220 HIS A 225 -1 N ILE A 220 O VAL A 235 SHEET 3 A 5 ILE A 303 ASP A 308 1 O VAL A 305 N VAL A 223 SHEET 4 A 5 VAL A 271 VAL A 274 -1 N VAL A 271 O ASP A 308 SHEET 5 A 5 TYR A 280 LEU A 281 -1 O LEU A 281 N LEU A 272 SHEET 1 B 4 GLU A 407 LYS A 419 0 SHEET 2 B 4 LYS A 360 ASP A 369 -1 N PHE A 361 O PHE A 416 SHEET 3 B 4 SER A 515 LEU A 520 -1 O SER A 517 N GLY A 367 SHEET 4 B 4 GLY A 478 HIS A 483 -1 N GLY A 478 O LEU A 520 SHEET 1 C 3 VAL A 393 ARG A 398 0 SHEET 2 C 3 THR A 380 GLN A 388 -1 N ILE A 387 O CYS A 395 SHEET 3 C 3 LYS A 402 PRO A 403 -1 O LYS A 402 N VAL A 381 SHEET 1 D 5 VAL A 393 ARG A 398 0 SHEET 2 D 5 THR A 380 GLN A 388 -1 N ILE A 387 O CYS A 395 SHEET 3 D 5 LEU A 428 TYR A 434 -1 O GLN A 432 N GLU A 384 SHEET 4 D 5 TYR A 462 LEU A 467 -1 O LEU A 466 N LEU A 429 SHEET 5 D 5 TRP A 485 GLN A 486 -1 O TRP A 485 N TYR A 463 SHEET 1 E 4 PHE A 783 VAL A 785 0 SHEET 2 E 4 ASP A 788 LEU A 796 -1 O ALA A 793 N PHE A 783 SHEET 3 E 4 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 E 4 LYS A 802 VAL A 803 -1 N LYS A 802 O TRP A 812 SHEET 1 F 6 PHE A 783 VAL A 785 0 SHEET 2 F 6 ASP A 788 LEU A 796 -1 O ALA A 793 N PHE A 783 SHEET 3 F 6 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 F 6 ILE A 828 HIS A 834 -1 O ILE A 828 N PHE A 815 SHEET 5 F 6 ILE A 876 GLU A 880 -1 O ILE A 879 N ILE A 831 SHEET 6 F 6 CYS A 869 GLY A 873 -1 N ILE A 870 O MET A 878 SHEET 1 G 3 ALA A 885 THR A 887 0 SHEET 2 G 3 ILE A 952 THR A 955 -1 O ILE A 954 N THR A 886 SHEET 3 G 3 LEU A 960 HIS A 962 -1 O PHE A 961 N MET A 953 SITE 1 AC1 12 MET A 804 ALA A 805 SER A 806 TRP A 812 SITE 2 AC1 12 GLU A 880 ILE A 881 VAL A 882 ALA A 885 SITE 3 AC1 12 MET A 953 PHE A 961 ILE A 963 ASP A 964 CRYST1 143.219 67.651 106.627 90.00 95.55 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006982 0.000000 0.000679 0.00000 SCALE2 0.000000 0.014782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009423 0.00000 MASTER 502 0 1 39 30 0 3 6 0 0 0 75 END