HEADER LIGASE 30-JUL-11 3T7E TITLE ATG8 TRANSFER FROM ATG7 TO ATG3: A DISTINCTIVE E1-E2 ARCHITECTURE AND TITLE 2 MECHANISM IN THE AUTOPHAGY PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME ATG7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CTD, UNP RESIDUES 289-630; COMPND 5 SYNONYM: ATG12-ACTIVATING ENZYME E1 ATG7, AUTOPHAGY-RELATED PROTEIN COMPND 6 7, CYTOPLASM TO VACUOLE TARGETING PROTEIN 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ATG7, APG7, CVT2, YHR171W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATG7, AUTOPHAGY, E1, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.TAHERBHOY,S.W.TAIT,S.E.KAISER,A.H.WILLIAMS,A.DENG,A.NOURSE, AUTHOR 2 M.HAMMEL,I.KURINOV,C.O.ROCK,D.R.GREEN,B.A.SCHULMAN REVDAT 1 23-NOV-11 3T7E 0 JRNL AUTH A.M.TAHERBHOY,S.W.TAIT,S.E.KAISER,A.H.WILLIAMS,A.DENG, JRNL AUTH 2 A.NOURSE,M.HAMMEL,I.KURINOV,C.O.ROCK,D.R.GREEN,B.A.SCHULMAN JRNL TITL ATG8 TRANSFER FROM ATG7 TO ATG3: A DISTINCTIVE E1-E2 JRNL TITL 2 ARCHITECTURE AND MECHANISM IN THE AUTOPHAGY PATHWAY. JRNL REF MOL.CELL V. 44 451 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 22055190 JRNL DOI 10.1016/J.MOLCEL.2011.08.034 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.840 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5240 - 5.4209 0.99 1801 159 0.2022 0.2296 REMARK 3 2 5.4209 - 4.3035 1.00 1668 148 0.1485 0.1983 REMARK 3 3 4.3035 - 3.7597 1.00 1648 147 0.1591 0.1822 REMARK 3 4 3.7597 - 3.4161 1.00 1636 145 0.1872 0.2102 REMARK 3 5 3.4161 - 3.1713 1.00 1593 141 0.2095 0.2631 REMARK 3 6 3.1713 - 2.9843 1.00 1621 144 0.2160 0.2731 REMARK 3 7 2.9843 - 2.8349 0.99 1588 140 0.2088 0.2851 REMARK 3 8 2.8349 - 2.7115 1.00 1597 142 0.2104 0.2180 REMARK 3 9 2.7115 - 2.6071 1.00 1595 141 0.2146 0.2732 REMARK 3 10 2.6071 - 2.5171 1.00 1584 140 0.2308 0.3024 REMARK 3 11 2.5171 - 2.4384 1.00 1578 140 0.2368 0.3010 REMARK 3 12 2.4384 - 2.3687 1.00 1558 137 0.2279 0.3198 REMARK 3 13 2.3687 - 2.3064 1.00 1596 142 0.2421 0.2797 REMARK 3 14 2.3064 - 2.2501 0.96 1509 134 0.2654 0.2987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 45.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.660 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03280 REMARK 3 B22 (A**2) : -0.03280 REMARK 3 B33 (A**2) : 0.06560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2529 REMARK 3 ANGLE : 1.205 3428 REMARK 3 CHIRALITY : 0.078 402 REMARK 3 PLANARITY : 0.005 431 REMARK 3 DIHEDRAL : 13.374 937 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and ((resseq 293:325)) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4928 23.9396 128.9476 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.5910 REMARK 3 T33: 0.4992 T12: -0.1016 REMARK 3 T13: 0.1370 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 1.5154 L22: 3.1954 REMARK 3 L33: 5.9463 L12: -2.0402 REMARK 3 L13: 1.2055 L23: -0.1325 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: -0.5388 S13: -0.6800 REMARK 3 S21: 0.6932 S22: -0.1080 S23: 0.8296 REMARK 3 S31: -0.0020 S32: -0.8495 S33: -0.0656 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and ((resseq 326:453)) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3980 24.3675 103.3713 REMARK 3 T TENSOR REMARK 3 T11: 0.3161 T22: 0.5066 REMARK 3 T33: 0.4824 T12: -0.1527 REMARK 3 T13: -0.1118 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 2.1842 L22: 3.5643 REMARK 3 L33: 2.8982 L12: -0.9971 REMARK 3 L13: 0.4042 L23: -0.9309 REMARK 3 S TENSOR REMARK 3 S11: 0.1616 S12: 0.1930 S13: -0.4738 REMARK 3 S21: -0.2340 S22: 0.1958 S23: 0.8305 REMARK 3 S31: 0.2811 S32: -0.7669 S33: -0.3056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and ((resseq 454:567)) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5469 34.3812 105.8798 REMARK 3 T TENSOR REMARK 3 T11: 0.4402 T22: 0.3222 REMARK 3 T33: 0.2894 T12: -0.1584 REMARK 3 T13: -0.0683 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 4.7680 L22: 4.3033 REMARK 3 L33: 2.8453 L12: -1.7218 REMARK 3 L13: 0.4922 L23: -0.9458 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.4692 S13: 0.3241 REMARK 3 S21: -0.3943 S22: -0.0625 S23: 0.0467 REMARK 3 S31: -0.7133 S32: 0.2748 S33: -0.0170 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and ((resseq 568:613)) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6925 47.5070 89.6478 REMARK 3 T TENSOR REMARK 3 T11: 0.7122 T22: 0.5507 REMARK 3 T33: 0.4163 T12: 0.0566 REMARK 3 T13: -0.1669 T23: 0.1184 REMARK 3 L TENSOR REMARK 3 L11: 5.8364 L22: 5.1843 REMARK 3 L33: 5.9573 L12: 0.4460 REMARK 3 L13: -0.8481 L23: 0.0562 REMARK 3 S TENSOR REMARK 3 S11: -0.1680 S12: 0.3969 S13: 0.4802 REMARK 3 S21: 0.0151 S22: 0.3107 S23: 0.3513 REMARK 3 S31: -1.1597 S32: 0.0655 S33: -0.1386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB067130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28255 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR-SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20K, 0.1M TRIS PH 8.5, 10MM REMARK 280 TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.13400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.27800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.27800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 166.70100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.27800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.27800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.56700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.27800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.27800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 166.70100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.27800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.27800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.56700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.13400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 222.26800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 73 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 287 REMARK 465 SER A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 LEU A 291 REMARK 465 LEU A 292 REMARK 465 ARG A 475 REMARK 465 ASP A 476 REMARK 465 GLU A 477 REMARK 465 GLN A 478 REMARK 465 SER A 479 REMARK 465 SER A 480 REMARK 465 GLY A 615 REMARK 465 ASN A 616 REMARK 465 ASP A 617 REMARK 465 VAL A 618 REMARK 465 PHE A 619 REMARK 465 GLU A 620 REMARK 465 TRP A 621 REMARK 465 GLU A 622 REMARK 465 ASP A 623 REMARK 465 ASP A 624 REMARK 465 GLU A 625 REMARK 465 SER A 626 REMARK 465 ASP A 627 REMARK 465 GLU A 628 REMARK 465 ILE A 629 REMARK 465 ALA A 630 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 481 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 79 O HOH A 81 2.06 REMARK 500 O HOH A 67 O HOH A 76 2.10 REMARK 500 O LEU A 483 O THR A 563 2.10 REMARK 500 O TYR A 566 O HOH A 36 2.11 REMARK 500 O HOH A 64 O HOH A 72 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 313 -45.50 -130.98 REMARK 500 ASP A 465 23.66 -141.41 REMARK 500 ASP A 496 -174.87 -64.19 REMARK 500 MET A 506 65.96 27.44 REMARK 500 SER A 537 137.93 -179.95 REMARK 500 GLU A 538 50.85 -95.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 572 SG REMARK 620 2 CYS A 569 SG 113.6 REMARK 620 3 CYS A 485 SG 111.2 104.0 REMARK 620 4 CYS A 488 SG 93.3 116.2 118.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T7F RELATED DB: PDB REMARK 900 RELATED ID: 3T7G RELATED DB: PDB REMARK 900 RELATED ID: 3T7H RELATED DB: PDB DBREF 3T7E A 289 630 UNP P38862 ATG7_YEAST 289 630 SEQADV 3T7E GLY A 287 UNP P38862 EXPRESSION TAG SEQADV 3T7E SER A 288 UNP P38862 EXPRESSION TAG SEQRES 1 A 344 GLY SER SER SER LEU LEU ASP PRO LEU LYS ILE ALA ASP SEQRES 2 A 344 GLN SER VAL ASP LEU ASN LEU LYS LEU MET LYS TRP ARG SEQRES 3 A 344 ILE LEU PRO ASP LEU ASN LEU ASP ILE ILE LYS ASN THR SEQRES 4 A 344 LYS VAL LEU LEU LEU GLY ALA GLY THR LEU GLY CYS TYR SEQRES 5 A 344 VAL SER ARG ALA LEU ILE ALA TRP GLY VAL ARG LYS ILE SEQRES 6 A 344 THR PHE VAL ASP ASN GLY THR VAL SER TYR SER ASN PRO SEQRES 7 A 344 VAL ARG GLN ALA LEU TYR ASN PHE GLU ASP CYS GLY LYS SEQRES 8 A 344 PRO LYS ALA GLU LEU ALA ALA ALA SER LEU LYS ARG ILE SEQRES 9 A 344 PHE PRO LEU MET ASP ALA THR GLY VAL LYS LEU SER ILE SEQRES 10 A 344 PRO MET ILE GLY HIS LYS LEU VAL ASN GLU GLU ALA GLN SEQRES 11 A 344 HIS LYS ASP PHE ASP ARG LEU ARG ALA LEU ILE LYS GLU SEQRES 12 A 344 HIS ASP ILE ILE PHE LEU LEU VAL ASP SER ARG GLU SER SEQRES 13 A 344 ARG TRP LEU PRO SER LEU LEU SER ASN ILE GLU ASN LYS SEQRES 14 A 344 THR VAL ILE ASN ALA ALA LEU GLY PHE ASP SER TYR LEU SEQRES 15 A 344 VAL MET ARG HIS GLY ASN ARG ASP GLU GLN SER SER LYS SEQRES 16 A 344 GLN LEU GLY CYS TYR PHE CYS HIS ASP VAL VAL ALA PRO SEQRES 17 A 344 THR ASP SER LEU THR ASP ARG THR LEU ASP GLN MET CYS SEQRES 18 A 344 THR VAL THR ARG PRO GLY VAL ALA MET MET ALA SER SER SEQRES 19 A 344 LEU ALA VAL GLU LEU MET THR SER LEU LEU GLN THR LYS SEQRES 20 A 344 TYR SER GLY SER GLU THR THR VAL LEU GLY ASP ILE PRO SEQRES 21 A 344 HIS GLN ILE ARG GLY PHE LEU HIS ASN PHE SER ILE LEU SEQRES 22 A 344 LYS LEU GLU THR PRO ALA TYR GLU HIS CYS PRO ALA CYS SEQRES 23 A 344 SER PRO LYS VAL ILE GLU ALA PHE THR ASP LEU GLY TRP SEQRES 24 A 344 GLU PHE VAL LYS LYS ALA LEU GLU HIS PRO LEU TYR LEU SEQRES 25 A 344 GLU GLU ILE SER GLY LEU SER VAL ILE LYS GLN GLU VAL SEQRES 26 A 344 GLU ARG LEU GLY ASN ASP VAL PHE GLU TRP GLU ASP ASP SEQRES 27 A 344 GLU SER ASP GLU ILE ALA HET ZN A 252 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *86(H2 O) HELIX 1 1 ASP A 293 ILE A 313 1 21 HELIX 2 2 LEU A 319 ASN A 324 1 6 HELIX 3 3 GLY A 333 TRP A 346 1 14 HELIX 4 4 SER A 362 GLN A 367 1 6 HELIX 5 5 ASN A 371 CYS A 375 5 5 HELIX 6 6 PRO A 378 PHE A 391 1 14 HELIX 7 7 ASN A 412 HIS A 430 1 19 HELIX 8 8 SER A 439 SER A 442 5 4 HELIX 9 9 ARG A 443 GLU A 453 1 11 HELIX 10 10 THR A 499 LEU A 503 5 5 HELIX 11 11 PRO A 512 LEU A 530 1 19 HELIX 12 12 SER A 573 GLY A 584 1 12 HELIX 13 13 GLY A 584 HIS A 594 1 11 HELIX 14 14 HIS A 594 GLY A 603 1 10 HELIX 15 15 GLY A 603 ARG A 613 1 11 SHEET 1 A 8 ASP A 395 VAL A 399 0 SHEET 2 A 8 LYS A 350 VAL A 354 1 N PHE A 353 O VAL A 399 SHEET 3 A 8 LYS A 326 LEU A 330 1 N LEU A 329 O THR A 352 SHEET 4 A 8 ILE A 432 LEU A 435 1 O PHE A 434 N LEU A 328 SHEET 5 A 8 THR A 456 LEU A 462 1 O ILE A 458 N LEU A 435 SHEET 6 A 8 SER A 466 ARG A 471 -1 O MET A 470 N ASN A 459 SHEET 7 A 8 GLN A 548 PHE A 552 -1 O ILE A 549 N VAL A 469 SHEET 8 A 8 SER A 557 LEU A 561 -1 O LEU A 559 N ARG A 550 SHEET 1 B 2 THR A 539 THR A 540 0 SHEET 2 B 2 GLY A 543 ASP A 544 -1 O GLY A 543 N THR A 540 LINK SG CYS A 572 ZN ZN A 252 1555 1555 2.31 LINK SG CYS A 569 ZN ZN A 252 1555 1555 2.32 LINK SG CYS A 485 ZN ZN A 252 1555 1555 2.32 LINK SG CYS A 488 ZN ZN A 252 1555 1555 2.32 SITE 1 AC1 4 CYS A 485 CYS A 488 CYS A 569 CYS A 572 CRYST1 66.556 66.556 222.268 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004499 0.00000 MASTER 395 0 1 15 10 0 1 6 0 0 0 27 END