HEADER TOXIN 20-JUL-11 3T0R TITLE CRYSTAL STRUCTURE OF MJTX-I, A MYOTOXIC LYS49-PHOSPHOLIPASE A2 FROM TITLE 2 BOTHROPS MOOJENI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2 HOMOLOG 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MJTX-I, MYOTOXIN I; COMPND 5 EC: 3.1.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334 KEYWDS LYS49-PHOSPHOLIPASE A2, MYOTOXIN, VENOM GLANDS, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,D.P.MARCHI-SALVADOR,M.R.M.FONTES REVDAT 2 25-OCT-17 3T0R 1 REMARK REVDAT 1 01-AUG-12 3T0R 0 JRNL AUTH G.H.M.SALVADOR,D.P.MARCHI-SALVADOR,M.R.M.FONTES JRNL TITL CRYSTAL STRUCTURE OF MJTX-I, A MYOTOXIC LYS49-PHOSPHOLIPASE JRNL TITL 2 A2 FROM BOTHROPS MOOJENI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 14529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3654 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4930 ; 2.151 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 7.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;40.347 ;24.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;21.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;25.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2724 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2349 ; 2.153 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3708 ; 3.867 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 4.545 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1222 ; 6.953 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3654 ; 2.599 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1119 63.3141 32.7092 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1382 REMARK 3 T33: 0.1569 T12: 0.0234 REMARK 3 T13: 0.0090 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.8761 L22: 2.0907 REMARK 3 L33: 0.5244 L12: 0.5492 REMARK 3 L13: 0.5724 L23: 0.8637 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.0393 S13: 0.0965 REMARK 3 S21: 0.0397 S22: 0.0596 S23: -0.1054 REMARK 3 S31: -0.0384 S32: -0.0212 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1027 31.4378 28.2515 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.1666 REMARK 3 T33: 0.1914 T12: -0.0095 REMARK 3 T13: 0.0365 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.3150 L22: 3.4406 REMARK 3 L33: 1.0969 L12: 0.8960 REMARK 3 L13: 0.2658 L23: 0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0810 S13: -0.0994 REMARK 3 S21: 0.2722 S22: 0.1120 S23: -0.1978 REMARK 3 S31: 0.0140 S32: -0.0273 S33: -0.1467 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7874 77.3153 0.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1497 REMARK 3 T33: 0.0843 T12: 0.1018 REMARK 3 T13: -0.0236 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.8460 L22: 4.1101 REMARK 3 L33: 2.8526 L12: -0.4488 REMARK 3 L13: -0.0629 L23: 0.8523 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.0825 S13: 0.1065 REMARK 3 S21: -0.0137 S22: 0.2833 S23: 0.0607 REMARK 3 S31: 0.1245 S32: 0.1040 S33: -0.2098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 133 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8491 46.0666 -2.0331 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.2012 REMARK 3 T33: 0.0962 T12: 0.1510 REMARK 3 T13: 0.0960 T23: 0.1224 REMARK 3 L TENSOR REMARK 3 L11: 1.0233 L22: 4.3031 REMARK 3 L33: 2.4087 L12: -0.4725 REMARK 3 L13: 0.5435 L23: 1.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: -0.1217 S13: -0.1766 REMARK 3 S21: 0.7840 S22: 0.4378 S23: 0.1374 REMARK 3 S31: 0.0783 S32: -0.2436 S33: -0.2498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8,5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.421 REMARK 200 MONOCHROMATOR : SI CURVED CRYSTAL ASYMMETRICALLY REMARK 200 -CUT REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 33.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% (W/V) PEG 4000; 0.1 M TRIS HCL; REMARK 280 0.15 M MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.79650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.92400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.79650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.92400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ACCORDING TO SMALL ANGLE X-RAY SCATTERING EXPERIMENTS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 119 REMARK 465 TYR C 120 REMARK 465 LEU C 121 REMARK 465 LYS C 122 REMARK 465 ASP D 118 REMARK 465 VAL D 119 REMARK 465 TYR D 120 REMARK 465 LEU D 121 REMARK 465 LYS D 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 ASN A 60 CG OD1 ND2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 ASN B 88 CG OD1 ND2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 VAL B 119 CG1 CG2 REMARK 470 LEU B 121 CG CD1 CD2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 LYS C 20 CG CD CE NZ REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LYS C 93 CG CD CE NZ REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 GLN D 11 CG CD OE1 NE2 REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 LYS D 20 CG CD CE NZ REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 LEU D 58 CG CD1 CD2 REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 TYR D 73 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP D 76 CG OD1 OD2 REMARK 470 GLU D 86 CG CD OE1 OE2 REMARK 470 ASN D 88 CG OD1 ND2 REMARK 470 LYS D 115 CG CD CE NZ REMARK 470 PHE D 125 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 123 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO A 123 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 TRP D 77 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 ASN D 88 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO D 90 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 48.17 39.45 REMARK 500 GLU A 87 -127.52 39.53 REMARK 500 ASP A 118 -33.93 -35.29 REMARK 500 PRO A 123 46.57 -15.80 REMARK 500 GLU B 87 -134.19 -179.33 REMARK 500 LEU B 121 -128.54 64.13 REMARK 500 ALA C 24 40.62 -154.50 REMARK 500 ASN C 79 48.79 74.11 REMARK 500 ASP D 67 82.15 51.94 REMARK 500 LYS D 116 7.35 -60.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I3H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BTHTX-I, A LYS49-PLA2 HOMOLOGUE FROM BOTHROPS REMARK 900 JARARACUSSU REMARK 900 RELATED ID: 2Q2J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PRTX-I, A LYS49-PLA2 HOMOLOGUE FROM BOTHROPS REMARK 900 PIRAJAI REMARK 900 RELATED ID: 1PA0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BNSP-7, A LYS49-PLA2 FROM BOTHROPS NEUWIEDI REMARK 900 PAULOENSIS. DBREF 3T0R A 1 133 UNP P82114 PA21B_BOTMO 1 121 DBREF 3T0R B 1 133 UNP P82114 PA21B_BOTMO 1 121 DBREF 3T0R C 1 133 UNP P82114 PA21B_BOTMO 1 121 DBREF 3T0R D 1 133 UNP P82114 PA21B_BOTMO 1 121 SEQRES 1 A 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 A 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 A 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 A 121 GLY ARG ASP CYS SEQRES 1 B 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 B 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 B 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 B 121 GLY ARG ASP CYS SEQRES 1 C 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 C 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 C 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 C 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 C 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 C 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 C 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 C 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 C 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 C 121 GLY ARG ASP CYS SEQRES 1 D 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 D 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 D 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 D 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 D 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 D 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 D 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 D 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 D 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 D 121 GLY ARG ASP CYS HET PE4 A 134 24 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 5 PE4 C16 H34 O8 FORMUL 6 HOH *113(H2 O) HELIX 1 1 SER A 1 GLY A 15 1 14 HELIX 2 2 ASN A 17 GLY A 23 1 7 HELIX 3 3 ASP A 39 LEU A 58 1 17 HELIX 4 4 ASN A 88 ASN A 109 1 21 HELIX 5 5 LYS A 110 TYR A 113 5 4 HELIX 6 6 ASN A 114 ASP A 118 5 5 HELIX 7 7 LEU B 2 GLY B 15 1 13 HELIX 8 8 ASN B 17 GLY B 23 1 7 HELIX 9 9 ASP B 39 LYS B 57 1 16 HELIX 10 10 ASN B 88 ASN B 109 1 21 HELIX 11 11 LYS B 110 TYR B 113 5 4 HELIX 12 12 ASN B 114 ASP B 118 5 5 HELIX 13 13 LEU C 2 GLY C 15 1 13 HELIX 14 14 ASN C 17 GLY C 23 1 7 HELIX 15 15 ASP C 39 TYR C 52 1 14 HELIX 16 16 ASN C 88 ASN C 109 1 21 HELIX 17 17 LYS C 110 THR C 112 5 3 HELIX 18 18 LEU D 2 GLY D 15 1 13 HELIX 19 19 ASN D 17 GLY D 23 1 7 HELIX 20 20 ASP D 39 LYS D 57 1 16 HELIX 21 21 CYS D 91 ASN D 109 1 19 HELIX 22 22 LYS D 110 TYR D 113 5 4 SHEET 1 A 2 TYR A 75 LYS A 78 0 SHEET 2 A 2 THR A 81 CYS A 84 -1 O VAL A 83 N ASP A 76 SHEET 1 B 2 TYR B 75 LYS B 78 0 SHEET 2 B 2 THR B 81 CYS B 84 -1 O VAL B 83 N ASP B 76 SHEET 1 C 2 TYR C 75 TRP C 77 0 SHEET 2 C 2 ILE C 82 CYS C 84 -1 O VAL C 83 N ASP C 76 SHEET 1 D 2 ASP D 76 LYS D 78 0 SHEET 2 D 2 THR D 81 VAL D 83 -1 O THR D 81 N LYS D 78 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.31 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.29 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.37 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.21 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.29 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.27 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.28 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.39 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.24 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.30 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.20 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.37 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.35 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.48 SSBOND 15 CYS C 27 CYS C 126 1555 1555 2.29 SSBOND 16 CYS C 29 CYS C 45 1555 1555 2.48 SSBOND 17 CYS C 44 CYS C 105 1555 1555 2.21 SSBOND 18 CYS C 50 CYS C 133 1555 1555 2.43 SSBOND 19 CYS C 51 CYS C 98 1555 1555 2.36 SSBOND 20 CYS C 61 CYS C 91 1555 1555 2.43 SSBOND 21 CYS C 84 CYS C 96 1555 1555 2.39 SSBOND 22 CYS D 27 CYS D 126 1555 1555 2.43 SSBOND 23 CYS D 29 CYS D 45 1555 1555 2.41 SSBOND 24 CYS D 44 CYS D 105 1555 1555 2.28 SSBOND 25 CYS D 50 CYS D 133 1555 1555 2.33 SSBOND 26 CYS D 51 CYS D 98 1555 1555 2.39 SSBOND 27 CYS D 61 CYS D 91 1555 1555 2.36 SSBOND 28 CYS D 84 CYS D 96 1555 1555 2.30 CISPEP 1 GLU C 87 ASN C 88 0 22.61 CISPEP 2 CYS D 84 GLY D 85 0 1.45 CISPEP 3 PRO D 90 CYS D 91 0 25.63 SITE 1 AC1 10 LYS A 7 LEU A 10 GLN A 11 GLY A 15 SITE 2 AC1 10 TYR A 75 HOH A 145 LYS B 7 LEU B 10 SITE 3 AC1 10 GLN B 11 TYR B 75 CRYST1 57.593 125.848 65.327 90.00 105.91 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017363 0.000000 0.004949 0.00000 SCALE2 0.000000 0.007946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015917 0.00000 MASTER 480 0 1 22 8 0 3 6 0 0 0 40 END