HEADER HYDROLASE/HYDROLASE INHIBITOR 13-JUL-11 3SW2 TITLE X-RAY CRYSTAL STRUCTURE OF HUMAN FXA IN COMPLEX WITH 6-CHLORO-N-((3S)- TITLE 2 2-OXO-1-(2-OXO-2-((5S)-8-OXO-5,6-DIHYDRO-1H-1,5-METHANOPYRIDO[1,2- TITLE 3 A][1,5]DIAZOCIN-3(2H,4H,8H)-YL)ETHYL)PIPERIDIN-3-YL)NAPHTHALENE-2- TITLE 4 SULFONAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR X; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FACTOR X LIGHT CHAIN (UNP RESIDUES 85-178); COMPND 5 SYNONYM: STUART FACTOR, STUART-PROWER FACTOR; COMPND 6 EC: 3.4.21.6; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR X; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: ACTIVATED FACTOR XA HEAVY CHAIN (UNP RESIDUES 235-472); COMPND 11 SYNONYM: STUART FACTOR, STUART-PROWER FACTOR; COMPND 12 EC: 3.4.21.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 TISSUE: BLOOD KEYWDS SERINE PROTEASE, EPIDERMAL GROWTH FACTOR-LIKE DOMAIN, BLOOD KEYWDS 2 COAGULATION FACTOR, CLEAVAGE ON PAIR OF BASIC RESIDUES, EGF-LIKE KEYWDS 3 DOMAIN, GAMMA-CARBOXYGLUTAMIC ACID, GLYCOPROTEIN, HYDROXYLATION, KEYWDS 4 ZYMOGEN, HYDROLASE, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 5 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.E.KLEI REVDAT 2 07-DEC-11 3SW2 1 JRNL REVDAT 1 16-NOV-11 3SW2 0 JRNL AUTH Y.SHI,S.P.O'CONNOR,D.SITKOFF,J.ZHANG,M.SHI,S.N.BISAHA, JRNL AUTH 2 Y.WANG,C.LI,Z.RUAN,R.MICHAEL LAWRENCE,H.E.KLEI,K.KISH, JRNL AUTH 3 E.C.LIU,S.M.SEILER,L.SCHWEIZER,T.E.STEINBACHER, JRNL AUTH 4 W.A.SCHUMACHER,J.A.ROBL,J.E.MACOR,K.S.ATWAL,P.D.STEIN JRNL TITL ARYLSULFONAMIDOPIPERIDONE DERIVATIVES AS A NOVEL CLASS OF JRNL TITL 2 FACTOR XA INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 21 7516 2011 JRNL REFN ISSN 0960-894X JRNL PMID 22041058 JRNL DOI 10.1016/J.BMCL.2011.06.098 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_501) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8786 - 4.8359 0.99 1537 148 0.1941 0.2302 REMARK 3 2 4.8359 - 3.8403 0.99 1480 145 0.1601 0.2173 REMARK 3 3 3.8403 - 3.3554 1.00 1451 140 0.1760 0.2370 REMARK 3 4 3.3554 - 3.0488 1.00 1467 141 0.1825 0.2855 REMARK 3 5 3.0488 - 2.8304 1.00 1440 141 0.2240 0.3335 REMARK 3 6 2.8304 - 2.6636 1.00 1435 140 0.2358 0.3276 REMARK 3 7 2.6636 - 2.5303 1.00 1425 138 0.2689 0.4053 REMARK 3 8 2.5303 - 2.4202 0.97 1363 133 0.2984 0.4004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 60.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.82900 REMARK 3 B22 (A**2) : -1.76800 REMARK 3 B33 (A**2) : 22.13840 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2264 REMARK 3 ANGLE : 1.085 3068 REMARK 3 CHIRALITY : 0.072 337 REMARK 3 PLANARITY : 0.004 394 REMARK 3 DIHEDRAL : 14.635 794 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 77.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3ENS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-22% W/V PEG5000 MME, 0.01 M CALCIUM REMARK 280 ACETATE, 0.35 M SODIUM ACETATE, 0.1 M LITHIUM SULFATE, 0.1 M MES, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.50900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.97800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.25750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.97800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.50900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.25750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 85 REMARK 465 ASP A 86 REMARK 465 GLY A 87 REMARK 465 ASP A 88 REMARK 465 GLN A 89 REMARK 465 CYS A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 SER A 93 REMARK 465 PRO A 94 REMARK 465 CYS A 95 REMARK 465 GLN A 96 REMARK 465 ASN A 97 REMARK 465 GLN A 98 REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 CYS A 101 REMARK 465 LYS A 102 REMARK 465 ASP A 103 REMARK 465 GLY A 104 REMARK 465 LEU A 105 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 TYR A 108 REMARK 465 THR A 109 REMARK 465 CYS A 110 REMARK 465 THR A 111 REMARK 465 CYS A 112 REMARK 465 LEU A 113 REMARK 465 GLU A 114 REMARK 465 GLY A 115 REMARK 465 PHE A 116 REMARK 465 GLU A 117 REMARK 465 GLY A 118 REMARK 465 LYS A 119 REMARK 465 ASN A 120 REMARK 465 CYS A 121 REMARK 465 GLU A 178 REMARK 465 THR B 244 REMARK 465 ARG B 245 REMARK 465 GLY B 246 REMARK 465 LEU B 247 REMARK 465 PRO B 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 THR A 125 OG1 CG2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 127 CD CE NZ REMARK 470 LEU A 131 CD1 CD2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 ASN A 145 CG OD1 ND2 REMARK 470 ARG A 153 CD NE CZ NH1 NH2 REMARK 470 GLN B 20 CD OE1 NE2 REMARK 470 GLU B 36 CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 ASN B 38 OD1 ND2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 ARG B 93 CD NE CZ NH1 NH2 REMARK 470 LYS B 96 CD CE NZ REMARK 470 GLU B 97 CD OE1 OE2 REMARK 470 ILE B 112 CD1 REMARK 470 ARG B 115 NE CZ NH1 NH2 REMARK 470 LYS B 134 CD CE NZ REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 166 CG OD1 ND2 REMARK 470 LYS B 169 CE NZ REMARK 470 ILE B 175 CD1 REMARK 470 GLN B 187 CG CD OE1 NE2 REMARK 470 ARG B 202 CZ NH1 NH2 REMARK 470 LYS B 223 CG CD CE NZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 243 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 128 -134.99 50.17 REMARK 500 ASP A 132 61.65 32.54 REMARK 500 ASN A 133 25.72 45.61 REMARK 500 GLN A 138 -109.32 -126.94 REMARK 500 LYS A 162 -55.22 -123.76 REMARK 500 ASN B 117 -0.60 72.67 REMARK 500 LYS B 148 74.24 -107.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 249 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 185 O REMARK 620 2 LYS B 224 O 92.0 REMARK 620 3 ARG B 222 O 148.5 86.5 REMARK 620 4 ASP B 185A O 74.1 101.6 75.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 72 O REMARK 620 2 ASP B 70 OD1 95.1 REMARK 620 3 GLN B 75 O 75.7 136.2 REMARK 620 4 GLU B 80 OE1 154.2 72.7 97.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FI1 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ENS RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF HUMAN FXA IN COMPLEX WITH METHYL REMARK 900 (2Z)-3-[(3-CHLORO-1H-INDOL-7-YL)AMINO]-2-CYANO-3-{[(3S)-2- REMARK 900 OXO-1-(2-OXO-2-PYRROLIDIN-1-YLETHYL)AZEPAN-3-YL]AMINO} REMARK 900 ACRYLATE REMARK 900 RELATED ID: 3K9X RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF HUMAN FXA IN COMPLEX WITH (S)-N- REMARK 900 ((2-METHYLBENZOFURAN-5-YLAMINO)(2-OXO-1-(2-OXO-2- REMARK 900 (PYRROLIDIN-1-YL)ETHYL)AZEPAN-3-YLAMINO)METHYLENE) REMARK 900 NICOTINAMIDE REMARK 900 RELATED ID: 3HPT RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF HUMAN FXA IN COMPLEX WITH (S)-2- REMARK 900 CYANO-1-(2-METHYLBENZOFURAN-5-YL)-3-(2-OXO-1-(2-OXO-2- REMARK 900 (PYRROLIDIN-1-YL)ETHYL)AZEPAN-3-YL)GUANIDINE DBREF 3SW2 A 85 178 UNP P00742 FA10_HUMAN 85 178 DBREF 3SW2 B 16 248 UNP P00742 FA10_HUMAN 235 472 SEQRES 1 A 94 LYS ASP GLY ASP GLN CYS GLU THR SER PRO CYS GLN ASN SEQRES 2 A 94 GLN GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS SEQRES 3 A 94 THR CYS LEU GLU GLY PHE GLU GLY LYS ASN CYS GLU LEU SEQRES 4 A 94 PHE THR ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS SEQRES 5 A 94 ASP GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS SEQRES 6 A 94 SER CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS SEQRES 7 A 94 ALA CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN SEQRES 8 A 94 THR LEU GLU SEQRES 1 B 238 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO SEQRES 2 B 238 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE SEQRES 3 B 238 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR SEQRES 4 B 238 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL SEQRES 5 B 238 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY SEQRES 6 B 238 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN SEQRES 7 B 238 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL SEQRES 8 B 238 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL SEQRES 9 B 238 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER SEQRES 10 B 238 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE SEQRES 11 B 238 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU SEQRES 12 B 238 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS SEQRES 13 B 238 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE SEQRES 14 B 238 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN SEQRES 15 B 238 GLY ASP SER GLY GLY PRO HIS VAL THR ARG PHE LYS ASP SEQRES 16 B 238 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY SEQRES 17 B 238 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 B 238 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR SEQRES 19 B 238 ARG GLY LEU PRO HET FI1 B 1 39 HET NA B 249 1 HET CA B 2 1 HET GOL B 8 6 HETNAM FI1 6-CHLORO-N-((3S)-2-OXO-1-(2-OXO-2-((5S)-8-OXO-5,6- HETNAM 2 FI1 DIHYDRO-1H-1,5-METHANOPYRIDO[1,2-A][1,5]DIAZOCIN-3(2H, HETNAM 3 FI1 4H,8H)-YL)ETHYL)PIPERIDIN-3-YL)NAPHTHALENE-2- HETNAM 4 FI1 SULFONAMIDE HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FI1 C28 H29 CL N4 O5 S FORMUL 4 NA NA 1+ FORMUL 5 CA CA 2+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *83(H2 O) HELIX 1 1 LYS A 127 CYS A 136 5 10 HELIX 2 2 ALA B 55 TYR B 60 1 6 HELIX 3 3 GLU B 124A THR B 131 1 8 HELIX 4 4 ASP B 164 SER B 171 1 8 HELIX 5 5 PHE B 234 MET B 242 1 9 SHEET 1 A 2 PHE A 139 GLU A 143 0 SHEET 2 A 2 SER A 146 SER A 150 -1 O VAL A 148 N HIS A 141 SHEET 1 B 2 TYR A 155 LEU A 157 0 SHEET 2 B 2 CYS A 164 PRO A 166 -1 O ILE A 165 N THR A 156 SHEET 1 C 7 GLN B 20 GLU B 21 0 SHEET 2 C 7 LYS B 156 PRO B 161 -1 O MET B 157 N GLN B 20 SHEET 3 C 7 THR B 135 GLY B 140 -1 N GLY B 136 O VAL B 160 SHEET 4 C 7 PRO B 198 PHE B 203 -1 O VAL B 200 N ILE B 137 SHEET 5 C 7 THR B 206 GLY B 216 -1 O THR B 206 N PHE B 203 SHEET 6 C 7 GLY B 226 LYS B 230 -1 O ILE B 227 N TRP B 215 SHEET 7 C 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 D 7 GLN B 30 ILE B 34 0 SHEET 2 D 7 GLY B 40 ILE B 46 -1 O CYS B 42 N LEU B 33 SHEET 3 D 7 TYR B 51 THR B 54 -1 O LEU B 53 N THR B 45 SHEET 4 D 7 ALA B 104 LEU B 108 -1 O LEU B 106 N ILE B 52 SHEET 5 D 7 ALA B 81 LYS B 90 -1 N GLU B 86 O ARG B 107 SHEET 6 D 7 LYS B 65 VAL B 68 -1 N VAL B 66 O HIS B 83 SHEET 7 D 7 GLN B 30 ILE B 34 -1 N LEU B 32 O ARG B 67 SSBOND 1 CYS A 129 CYS A 140 1555 1555 2.04 SSBOND 2 CYS A 136 CYS A 149 1555 1555 2.02 SSBOND 3 CYS A 151 CYS A 164 1555 1555 2.08 SSBOND 4 CYS A 172 CYS B 122 1555 1555 2.06 SSBOND 5 CYS B 22 CYS B 27 1555 1555 2.05 SSBOND 6 CYS B 42 CYS B 58 1555 1555 2.06 SSBOND 7 CYS B 168 CYS B 182 1555 1555 2.04 SSBOND 8 CYS B 191 CYS B 220 1555 1555 2.03 LINK O TYR B 185 NA NA B 249 1555 1555 1.95 LINK O ASN B 72 CA CA B 2 1555 1555 2.41 LINK O LYS B 224 NA NA B 249 1555 1555 2.42 LINK OD1 ASP B 70 CA CA B 2 1555 1555 2.46 LINK O GLN B 75 CA CA B 2 1555 1555 2.52 LINK OE1 GLU B 80 CA CA B 2 1555 1555 2.53 LINK O ARG B 222 NA NA B 249 1555 1555 2.90 LINK O ASP B 185A NA NA B 249 1555 1555 3.19 SITE 1 AC1 14 GLU B 97 TYR B 99 PHE B 174 ALA B 190 SITE 2 AC1 14 GLN B 192 SER B 195 VAL B 213 TRP B 215 SITE 3 AC1 14 GLY B 216 GLY B 218 GLY B 226 ILE B 227 SITE 4 AC1 14 TYR B 228 HOH B 259 SITE 1 AC2 4 TYR B 185 ASP B 185A ARG B 222 LYS B 224 SITE 1 AC3 5 ASP B 70 ASN B 72 GLN B 75 GLU B 77 SITE 2 AC3 5 GLU B 80 SITE 1 AC4 3 LEU B 123 PRO B 124 LEU B 235 CRYST1 57.018 72.515 77.956 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012828 0.00000 MASTER 373 0 4 5 18 0 8 6 0 0 0 27 END