HEADER METAL TRANSPORT 08-JUL-11 3SS8 TITLE CRYSTAL STRUCTURE OF NFEOB FROM S. THERMOPHILUS BOUND TO GDP.ALF4- AND TITLE 2 K+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROUS IRON UPTAKE TRANSPORTER PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NFEOB, UNP RESIDUES 1-270; COMPND 5 SYNONYM: FEOB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 264199; SOURCE 4 STRAIN: LMG 18311; SOURCE 5 GENE: FEOB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS G PROTEIN, TRANSMEMBRANE, IRON TRANSPORT, GTPASE, TRANSITION-STATE KEYWDS 2 ANALOGUE, POTASSIUM, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.R.ASH,M.J.MAHER,J.M.GUSS,M.JORMAKKA REVDAT 2 27-JUN-12 3SS8 1 JRNL REVDAT 1 24-AUG-11 3SS8 0 JRNL AUTH M.R.ASH,M.J.MAHER,J.M.GUSS,M.JORMAKKA JRNL TITL THE INITIATION OF GTP HYDROLYSIS BY THE G-DOMAIN OF FEOB: JRNL TITL 2 INSIGHTS FROM A TRANSITION-STATE COMPLEX STRUCTURE JRNL REF PLOS ONE V. 6 23355 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21858085 JRNL DOI 10.1371/JOURNAL.PONE.0023355 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 19915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4081 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5564 ; 1.468 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 3.738 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;34.075 ;25.376 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 703 ;13.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2996 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2570 ; 0.409 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4175 ; 0.771 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1511 ; 0.953 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1389 ; 1.696 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LX5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PCB BUFFER, 25%(W/V) PEG 1500, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.17300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.24700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.70050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.24700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.17300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.70050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ALA A 258 REMARK 465 GLU A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 THR A 262 REMARK 465 GLU A 263 REMARK 465 ASP A 264 REMARK 465 PHE A 265 REMARK 465 ALA A 266 REMARK 465 LEU A 267 REMARK 465 THR A 268 REMARK 465 LEU A 269 REMARK 465 SER A 270 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ALA B 258 REMARK 465 GLU B 259 REMARK 465 SER B 260 REMARK 465 HIS B 261 REMARK 465 THR B 262 REMARK 465 GLU B 263 REMARK 465 ASP B 264 REMARK 465 PHE B 265 REMARK 465 ALA B 266 REMARK 465 LEU B 267 REMARK 465 THR B 268 REMARK 465 LEU B 269 REMARK 465 SER B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 ARG A 78 CD NE CZ NH1 NH2 REMARK 470 GLU A 92 CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 GLU A 240 CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 TYR B 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 68 CD CE NZ REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ARG B 93 CZ NH1 NH2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 LYS B 154 CE NZ REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 LYS B 222 CD CE NZ REMARK 470 GLU B 233 CD OE1 OE2 REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2B GDP A 300 AL ALF A 303 1.88 REMARK 500 AL ALF A 303 O HOH A 273 1.94 REMARK 500 O2B GDP B 300 AL ALF B 303 1.97 REMARK 500 AL ALF B 303 O HOH B 273 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 34.30 -88.92 REMARK 500 TYR A 172 -168.50 -100.69 REMARK 500 ASP A 215 67.59 39.85 REMARK 500 ASN B 30 32.10 -88.21 REMARK 500 THR B 159 75.97 -119.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 300 O3B REMARK 620 2 THR A 15 OG1 89.1 REMARK 620 3 THR A 35 OG1 161.5 80.8 REMARK 620 4 HOH A 271 O 103.5 93.1 92.6 REMARK 620 5 HOH A 272 O 83.1 77.6 79.5 168.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 300 O3B REMARK 620 2 THR B 35 OG1 166.6 REMARK 620 3 THR B 15 OG1 88.4 83.8 REMARK 620 4 HOH B 271 O 102.0 88.9 89.7 REMARK 620 5 HOH B 272 O 86.9 81.2 82.3 167.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 300 O2B REMARK 620 2 GDP A 300 O2A 80.0 REMARK 620 3 GLY A 29 O 144.5 68.8 REMARK 620 4 TRP A 31 O 132.3 147.7 80.2 REMARK 620 5 ASN A 11 OD1 106.4 108.2 69.6 67.3 REMARK 620 6 GDP A 300 O3A 47.7 48.0 97.4 150.2 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 300 O2B REMARK 620 2 GDP B 300 O2A 78.5 REMARK 620 3 GLY B 29 O 145.0 70.9 REMARK 620 4 TRP B 31 O 129.8 151.3 83.1 REMARK 620 5 ASN B 11 OD1 103.9 107.5 70.7 73.6 REMARK 620 6 GDP B 300 O3A 47.4 48.0 98.2 152.5 80.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LX5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MGMPPNP-BOUND NFEOB FROM S. REMARK 900 THERMOPHILUS REMARK 900 RELATED ID: 3LX8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GDP-BOUND NFEOB FROM S. THERMOPHILUS DBREF 3SS8 A 1 270 UNP Q5M586 Q5M586_STRT2 1 270 DBREF 3SS8 B 1 270 UNP Q5M586 Q5M586_STRT2 1 270 SEQADV 3SS8 GLY A -1 UNP Q5M586 EXPRESSION TAG SEQADV 3SS8 SER A 0 UNP Q5M586 EXPRESSION TAG SEQADV 3SS8 GLY B -1 UNP Q5M586 EXPRESSION TAG SEQADV 3SS8 SER B 0 UNP Q5M586 EXPRESSION TAG SEQRES 1 A 272 GLY SER MET THR GLU ILE ALA LEU ILE GLY ASN PRO ASN SEQRES 2 A 272 SER GLY LYS THR SER LEU PHE ASN LEU ILE THR GLY HIS SEQRES 3 A 272 ASN GLN ARG VAL GLY ASN TRP PRO GLY VAL THR VAL GLU SEQRES 4 A 272 ARG LYS SER GLY LEU VAL LYS LYS ASN LYS ASP LEU GLU SEQRES 5 A 272 ILE GLN ASP LEU PRO GLY ILE TYR SER MET SER PRO TYR SEQRES 6 A 272 SER PRO GLU GLU LYS VAL ALA ARG ASP TYR LEU LEU SER SEQRES 7 A 272 GLN ARG ALA ASP SER ILE LEU ASN VAL VAL ASP ALA THR SEQRES 8 A 272 ASN LEU GLU ARG ASN LEU TYR LEU THR THR GLN LEU ILE SEQRES 9 A 272 GLU THR GLY ILE PRO VAL THR ILE ALA LEU ASN MET ILE SEQRES 10 A 272 ASP VAL LEU ASP GLY GLN GLY LYS LYS ILE ASN VAL ASP SEQRES 11 A 272 LYS LEU SER TYR HIS LEU GLY VAL PRO VAL VAL ALA THR SEQRES 12 A 272 SER ALA LEU LYS GLN THR GLY VAL ASP GLN VAL VAL LYS SEQRES 13 A 272 LYS ALA ALA HIS THR THR THR SER THR VAL GLY ASP LEU SEQRES 14 A 272 ALA PHE PRO ILE TYR ASP ASP ARG LEU GLU ALA ALA ILE SEQRES 15 A 272 SER GLN ILE LEU GLU VAL LEU GLY ASN SER VAL PRO GLN SEQRES 16 A 272 ARG SER ALA ARG PHE TYR ALA ILE LYS LEU PHE GLU GLN SEQRES 17 A 272 ASP SER LEU VAL GLU ALA GLU LEU ASP LEU SER GLN PHE SEQRES 18 A 272 GLN ARG LYS GLU ILE GLU ASP ILE ILE ARG ILE THR GLU SEQRES 19 A 272 GLU ILE PHE THR GLU ASP ALA GLU SER ILE VAL ILE ASN SEQRES 20 A 272 GLU ARG TYR ALA PHE ILE GLU ARG VAL CYS GLN MET ALA SEQRES 21 A 272 GLU SER HIS THR GLU ASP PHE ALA LEU THR LEU SER SEQRES 1 B 272 GLY SER MET THR GLU ILE ALA LEU ILE GLY ASN PRO ASN SEQRES 2 B 272 SER GLY LYS THR SER LEU PHE ASN LEU ILE THR GLY HIS SEQRES 3 B 272 ASN GLN ARG VAL GLY ASN TRP PRO GLY VAL THR VAL GLU SEQRES 4 B 272 ARG LYS SER GLY LEU VAL LYS LYS ASN LYS ASP LEU GLU SEQRES 5 B 272 ILE GLN ASP LEU PRO GLY ILE TYR SER MET SER PRO TYR SEQRES 6 B 272 SER PRO GLU GLU LYS VAL ALA ARG ASP TYR LEU LEU SER SEQRES 7 B 272 GLN ARG ALA ASP SER ILE LEU ASN VAL VAL ASP ALA THR SEQRES 8 B 272 ASN LEU GLU ARG ASN LEU TYR LEU THR THR GLN LEU ILE SEQRES 9 B 272 GLU THR GLY ILE PRO VAL THR ILE ALA LEU ASN MET ILE SEQRES 10 B 272 ASP VAL LEU ASP GLY GLN GLY LYS LYS ILE ASN VAL ASP SEQRES 11 B 272 LYS LEU SER TYR HIS LEU GLY VAL PRO VAL VAL ALA THR SEQRES 12 B 272 SER ALA LEU LYS GLN THR GLY VAL ASP GLN VAL VAL LYS SEQRES 13 B 272 LYS ALA ALA HIS THR THR THR SER THR VAL GLY ASP LEU SEQRES 14 B 272 ALA PHE PRO ILE TYR ASP ASP ARG LEU GLU ALA ALA ILE SEQRES 15 B 272 SER GLN ILE LEU GLU VAL LEU GLY ASN SER VAL PRO GLN SEQRES 16 B 272 ARG SER ALA ARG PHE TYR ALA ILE LYS LEU PHE GLU GLN SEQRES 17 B 272 ASP SER LEU VAL GLU ALA GLU LEU ASP LEU SER GLN PHE SEQRES 18 B 272 GLN ARG LYS GLU ILE GLU ASP ILE ILE ARG ILE THR GLU SEQRES 19 B 272 GLU ILE PHE THR GLU ASP ALA GLU SER ILE VAL ILE ASN SEQRES 20 B 272 GLU ARG TYR ALA PHE ILE GLU ARG VAL CYS GLN MET ALA SEQRES 21 B 272 GLU SER HIS THR GLU ASP PHE ALA LEU THR LEU SER HET GDP A 300 28 HET K A 301 1 HET MG A 302 1 HET ALF A 303 5 HET GDP B 300 28 HET K B 301 1 HET MG B 302 1 HET ALF B 303 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM ALF TETRAFLUOROALUMINATE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 K 2(K 1+) FORMUL 5 MG 2(MG 2+) FORMUL 6 ALF 2(AL F4 1-) FORMUL 11 HOH *72(H2 O) HELIX 1 1 GLY A 13 GLY A 23 1 11 HELIX 2 2 SER A 64 SER A 76 1 13 HELIX 3 3 ASN A 90 THR A 104 1 15 HELIX 4 4 MET A 114 GLN A 121 1 8 HELIX 5 5 ASN A 126 GLY A 135 1 10 HELIX 6 6 GLY A 148 HIS A 158 1 11 HELIX 7 7 ASP A 173 GLY A 188 1 16 HELIX 8 8 SER A 195 GLU A 205 1 11 HELIX 9 9 ASP A 207 ASP A 215 1 9 HELIX 10 10 SER A 217 THR A 236 1 20 HELIX 11 11 ASP A 238 GLN A 256 1 19 HELIX 12 12 GLY B 13 GLY B 23 1 11 HELIX 13 13 SER B 64 SER B 76 1 13 HELIX 14 14 ASN B 90 GLU B 103 1 14 HELIX 15 15 MET B 114 GLN B 121 1 8 HELIX 16 16 ASN B 126 GLY B 135 1 10 HELIX 17 17 GLY B 148 HIS B 158 1 11 HELIX 18 18 ASP B 173 GLY B 188 1 16 HELIX 19 19 ASN B 189 VAL B 191 5 3 HELIX 20 20 SER B 195 GLN B 206 1 12 HELIX 21 21 ASP B 207 ASP B 215 1 9 HELIX 22 22 SER B 217 THR B 236 1 20 HELIX 23 23 ASP B 238 MET B 257 1 20 SHEET 1 A 6 LYS A 39 VAL A 43 0 SHEET 2 A 6 ASN A 46 ASP A 53 -1 O ASP A 53 N LYS A 39 SHEET 3 A 6 THR A 2 ILE A 7 1 N LEU A 6 O GLN A 52 SHEET 4 A 6 SER A 81 ASP A 87 1 O LEU A 83 N ALA A 5 SHEET 5 A 6 VAL A 108 ASN A 113 1 O ALA A 111 N ASN A 84 SHEET 6 A 6 VAL A 138 ALA A 140 1 O VAL A 139 N LEU A 112 SHEET 1 B 6 LYS B 39 VAL B 43 0 SHEET 2 B 6 ASN B 46 ASP B 53 -1 O ASP B 53 N LYS B 39 SHEET 3 B 6 THR B 2 GLY B 8 1 N THR B 2 O GLU B 50 SHEET 4 B 6 SER B 81 ASP B 87 1 O LEU B 83 N ALA B 5 SHEET 5 B 6 VAL B 108 ASN B 113 1 O ALA B 111 N VAL B 86 SHEET 6 B 6 VAL B 138 ALA B 140 1 O VAL B 139 N LEU B 112 LINK O3B GDP A 300 MG MG A 302 1555 1555 1.89 LINK OG1 THR A 15 MG MG A 302 1555 1555 2.03 LINK O3B GDP B 300 MG MG B 302 1555 1555 2.10 LINK OG1 THR B 35 MG MG B 302 1555 1555 2.15 LINK OG1 THR B 15 MG MG B 302 1555 1555 2.15 LINK OG1 THR A 35 MG MG A 302 1555 1555 2.16 LINK O2B GDP A 300 K K A 301 1555 1555 2.72 LINK O2B GDP B 300 K K B 301 1555 1555 2.74 LINK O2A GDP B 300 K K B 301 1555 1555 2.75 LINK O2A GDP A 300 K K A 301 1555 1555 2.78 LINK O GLY B 29 K K B 301 1555 1555 2.84 LINK O GLY A 29 K K A 301 1555 1555 2.89 LINK O TRP A 31 K K A 301 1555 1555 2.91 LINK O TRP B 31 K K B 301 1555 1555 2.97 LINK OD1 ASN B 11 K K B 301 1555 1555 3.14 LINK OD1 ASN A 11 K K A 301 1555 1555 3.16 LINK O3A GDP A 300 K K A 301 1555 1555 3.44 LINK O3A GDP B 300 K K B 301 1555 1555 3.44 LINK MG MG B 302 O HOH B 271 1555 1555 1.89 LINK MG MG A 302 O HOH A 271 1555 1555 1.98 LINK MG MG A 302 O HOH A 272 1555 1555 2.24 LINK MG MG B 302 O HOH B 272 1555 1555 2.27 SITE 1 AC1 21 ASN A 11 SER A 12 GLY A 13 LYS A 14 SITE 2 AC1 21 THR A 15 SER A 16 VAL A 28 GLY A 29 SITE 3 AC1 21 ASN A 30 ASN A 113 MET A 114 ASP A 116 SITE 4 AC1 21 VAL A 117 SER A 142 ALA A 143 LEU A 144 SITE 5 AC1 21 HOH A 271 HOH A 272 K A 301 MG A 302 SITE 6 AC1 21 ALF A 303 SITE 1 AC2 5 ASN A 11 GLY A 29 TRP A 31 GDP A 300 SITE 2 AC2 5 ALF A 303 SITE 1 AC3 6 THR A 15 THR A 35 HOH A 271 HOH A 272 SITE 2 AC3 6 GDP A 300 ALF A 303 SITE 1 AC4 14 PRO A 10 ASN A 11 LYS A 14 PRO A 32 SITE 2 AC4 14 GLY A 33 VAL A 34 THR A 35 GLY A 56 SITE 3 AC4 14 HOH A 271 HOH A 272 HOH A 273 GDP A 300 SITE 4 AC4 14 K A 301 MG A 302 SITE 1 AC5 19 ASN B 11 SER B 12 GLY B 13 LYS B 14 SITE 2 AC5 19 THR B 15 SER B 16 GLY B 29 ASN B 30 SITE 3 AC5 19 ASN B 113 MET B 114 ASP B 116 VAL B 117 SITE 4 AC5 19 SER B 142 ALA B 143 LEU B 144 HOH B 272 SITE 5 AC5 19 K B 301 MG B 302 ALF B 303 SITE 1 AC6 5 ASN B 11 GLY B 29 TRP B 31 GDP B 300 SITE 2 AC6 5 ALF B 303 SITE 1 AC7 6 THR B 15 THR B 35 HOH B 271 HOH B 272 SITE 2 AC7 6 GDP B 300 ALF B 303 SITE 1 AC8 14 PRO B 10 ASN B 11 LYS B 14 PRO B 32 SITE 2 AC8 14 GLY B 33 VAL B 34 THR B 35 GLY B 56 SITE 3 AC8 14 HOH B 271 HOH B 272 HOH B 273 GDP B 300 SITE 4 AC8 14 K B 301 MG B 302 CRYST1 48.346 75.401 156.494 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006390 0.00000 MASTER 424 0 8 23 12 0 27 6 0 0 0 42 END