HEADER HYDROLASE 23-MAY-11 3S5Q TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE (BDI_2473) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.85 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYLHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 29-223; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503 / DSM 20701 / NCTC 11152; SOURCE 5 GENE: BDI_2473; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CONCANAVALIN A-LIKE LECTINS/GLUCANASES, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 08-NOV-17 3S5Q 1 REMARK REVDAT 2 24-DEC-14 3S5Q 1 TITLE REVDAT 1 15-JUN-11 3S5Q 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL GLYCOSYL HYDROLASE JRNL TITL 2 (BDI_2473) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.85 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 16554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 854 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.38000 REMARK 3 B22 (A**2) : -1.43000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.588 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1831 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1225 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2491 ; 1.529 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2996 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.822 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.407 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;13.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2046 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1076 ; 0.764 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 438 ; 0.221 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1750 ; 1.289 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 755 ; 2.162 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 735 ; 3.214 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -17 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8020 24.8440 55.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.0881 REMARK 3 T33: 0.0850 T12: 0.0121 REMARK 3 T13: -0.0137 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.2823 L22: 0.7913 REMARK 3 L33: 1.5430 L12: 0.2395 REMARK 3 L13: 0.2111 L23: 0.7159 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.0274 S13: -0.0477 REMARK 3 S21: 0.0834 S22: 0.0468 S23: -0.1047 REMARK 3 S31: 0.1412 S32: 0.0824 S33: -0.0596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. ANOMALOUS DIFFERENCE FOURIERS SUPPORT THE REMARK 3 MODELING OF IODIDE (IOD) IONS. 6. 1,2-ETHANEDIOL (EDO) MOLECULES REMARK 3 FROM THE CRYOPROTECTION SOLUTION ARE MODELED. REMARK 4 REMARK 4 3S5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954,0.91837,0.97874 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 30 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 36.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.980 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.99 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.200M NH4I, 20.00% PEG-3350, NO REMARK 280 BUFFER PH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.53100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.61050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.23650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.61050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.53100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.23650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 353 O HOH A 493 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 85 -153.89 -163.87 REMARK 500 ASN A 96 56.40 -114.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394767 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 29-223) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. DBREF 3S5Q A 29 223 UNP A6LES9 A6LES9_PARD8 29 223 SEQADV 3S5Q MSE A -18 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q GLY A -17 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q SER A -16 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q ASP A -15 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q LYS A -14 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q ILE A -13 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q HIS A -12 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q HIS A -11 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q HIS A -10 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q HIS A -9 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q HIS A -8 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q HIS A -7 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q GLU A -6 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q ASN A -5 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q LEU A -4 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q TYR A -3 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q PHE A -2 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q GLN A -1 UNP A6LES9 EXPRESSION TAG SEQADV 3S5Q GLY A 0 UNP A6LES9 EXPRESSION TAG SEQRES 1 A 214 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 214 ASN LEU TYR PHE GLN GLY TYR ARG PRO LEU PHE ASP LYS SEQRES 3 A 214 ASP LEU SER ASN ALA ASP TYR ASP SER SER VAL TRP THR SEQRES 4 A 214 PHE LYS ASN GLY ILE LEU THR ALA THR ALA ASP GLN SER SEQRES 5 A 214 ILE TRP THR LYS VAL GLN TYR GLU ASN PHE ILE LEU ASP SEQRES 6 A 214 LEU GLU PHE LYS THR ASP VAL ASN THR ASN SER GLY VAL SEQRES 7 A 214 VAL ILE TYR CYS THR ASP LYS GLY ASN TRP ILE PRO SER SEQRES 8 A 214 SER ILE GLU ILE GLN ILE ALA ASP ASP HIS HIS PRO GLU SEQRES 9 A 214 TRP GLN SER TYR PRO GLU TYR TRP ARG CYS GLY SER ILE SEQRES 10 A 214 TYR GLY HIS LYS GLY ALA ASN GLU GLN LEU VAL VAL LYS SEQRES 11 A 214 LYS PRO GLY GLU TRP ASN ARG MSE ILE ILE THR ALA LYS SEQRES 12 A 214 GLY GLN GLN ILE ASP ILE GLU LEU ASN GLY LYS HIS ILE SEQRES 13 A 214 VAL SER ALA ASN LEU ALA ASP TRP THR SER GLY THR THR SEQRES 14 A 214 ASN PRO ASP GLY THR GLU ILE PRO GLU TRP LEU PRO ILE SEQRES 15 A 214 PRO TYR ALA ASN MSE PRO THR LYS GLY TYR ILE GLY LEU SEQRES 16 A 214 GLN GLY LYS HIS GLY GLU SER ASN ILE TRP PHE ARG ASN SEQRES 17 A 214 ILE GLN LEU LYS GLN LEU MODRES 3S5Q MSE A 147 MET SELENOMETHIONINE MODRES 3S5Q MSE A 196 MET SELENOMETHIONINE HET MSE A 147 8 HET MSE A 196 8 HET IOD A 300 1 HET IOD A 301 1 HET IOD A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 IOD 3(I 1-) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 11 HOH *187(H2 O) HELIX 1 1 ASN A -5 GLN A -1 5 5 HELIX 2 2 TRP A 97 SER A 101 5 5 HELIX 3 3 HIS A 111 TYR A 117 5 7 HELIX 4 4 PRO A 118 ARG A 122 5 5 HELIX 5 5 ALA A 171 TRP A 173 5 3 HELIX 6 6 PRO A 192 MSE A 196 5 5 SHEET 1 A 4 TYR A 29 PRO A 31 0 SHEET 2 A 4 ILE A 213 GLN A 222 -1 O LEU A 220 N ARG A 30 SHEET 3 A 4 ILE A 53 ALA A 56 -1 N LEU A 54 O PHE A 215 SHEET 4 A 4 TRP A 47 LYS A 50 -1 N THR A 48 O THR A 55 SHEET 1 B 6 TYR A 29 PRO A 31 0 SHEET 2 B 6 ILE A 213 GLN A 222 -1 O LEU A 220 N ARG A 30 SHEET 3 B 6 PHE A 71 THR A 79 -1 N ASP A 74 O GLN A 219 SHEET 4 B 6 TRP A 144 LYS A 152 -1 O ILE A 149 N LEU A 73 SHEET 5 B 6 GLN A 155 LEU A 160 -1 O ASP A 157 N THR A 150 SHEET 6 B 6 LYS A 163 ASN A 169 -1 O ALA A 168 N ILE A 156 SHEET 1 C 5 ALA A 40 ASP A 41 0 SHEET 2 C 5 ILE A 62 THR A 64 -1 O TRP A 63 N ASP A 41 SHEET 3 C 5 TYR A 201 LEU A 204 -1 O ILE A 202 N THR A 64 SHEET 4 C 5 ASN A 84 CYS A 91 -1 N VAL A 88 O GLY A 203 SHEET 5 C 5 ILE A 102 ALA A 107 -1 O ILE A 104 N VAL A 87 LINK C ARG A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ILE A 148 1555 1555 1.32 LINK C ASN A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N PRO A 197 1555 1555 1.36 SITE 1 AC1 3 HIS A -11 ASN A 84 TYR A 127 SITE 1 AC2 1 GLU A 184 SITE 1 AC3 1 HIS A -7 SITE 1 AC4 4 LYS A 130 ASN A 133 SER A 167 HOH A 394 SITE 1 AC5 7 ASN A 51 ASN A 179 PRO A 180 ASP A 181 SITE 2 AC5 7 HOH A 450 HOH A 451 HOH A 452 SITE 1 AC6 4 ILE A -13 THR A 174 EDO A 306 HOH A 340 SITE 1 AC7 7 THR A 178 ASN A 179 PRO A 180 ARG A 216 SITE 2 AC7 7 EDO A 305 HOH A 319 HOH A 465 SITE 1 AC8 6 LEU A 32 PHE A 33 PHE A 49 ASN A 217 SITE 2 AC8 6 ILE A 218 HOH A 321 SITE 1 AC9 6 VAL A 81 HIS A 111 THR A 198 HOH A 364 SITE 2 AC9 6 HOH A 370 HOH A 373 CRYST1 41.062 60.473 77.221 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024354 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012950 0.00000 MASTER 355 0 11 6 15 0 13 6 0 0 0 17 END