HEADER TRANSCRIPTION 28-APR-11 3RQI TITLE CRYSTAL STRUCTURE OF A RESPONSE REGULATOR PROTEIN FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI WITH A PHOSPHORYLATED ASPARTIC ACID, CALCIUM ION AND TITLE 3 CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: BURPS1710B_0384; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, RESPONSE REGULATOR PROTEIN, KEYWDS 3 PHOSPHORYLATED ASPARTIC ACID, CALCIUM ION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 11-MAY-11 3RQI 0 JRNL AUTH T.E.EDWARDS,D.R.DAVIES,B.SANKARAN, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A RESPONSE REGULATOR PROTEIN FROM JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI WITH A PHOSPHORYLATED ASPARTIC JRNL TITL 3 ACID, CALCIUM ION AND CITRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 1.22000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.591 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1319 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1803 ; 1.486 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 5.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;36.372 ;25.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;12.393 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 996 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 853 ; 0.794 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1350 ; 1.399 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 466 ; 2.415 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 450 ; 3.921 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2989 10.6455 13.4674 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: 0.0675 REMARK 3 T33: 0.1033 T12: -0.0098 REMARK 3 T13: 0.0073 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.3526 L22: 2.1079 REMARK 3 L33: 2.4688 L12: -0.9046 REMARK 3 L13: -0.2636 L23: 0.2811 REMARK 3 S TENSOR REMARK 3 S11: 0.0634 S12: 0.0988 S13: 0.1076 REMARK 3 S21: 0.0090 S22: -0.0655 S23: -0.2004 REMARK 3 S31: -0.0421 S32: 0.1288 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8538 1.5338 13.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0622 REMARK 3 T33: 0.0604 T12: 0.0190 REMARK 3 T13: -0.0128 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.3043 L22: 0.9541 REMARK 3 L33: 0.0037 L12: 1.2781 REMARK 3 L13: 0.0318 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0849 S13: -0.0731 REMARK 3 S21: -0.0161 S22: -0.0078 S23: 0.0134 REMARK 3 S31: 0.0083 S32: -0.0005 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0820 -22.7767 23.1890 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0433 REMARK 3 T33: 0.5940 T12: -0.0199 REMARK 3 T13: -0.1145 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 0.3381 L22: 5.2773 REMARK 3 L33: 10.9777 L12: -1.3207 REMARK 3 L13: 1.9146 L23: -7.6056 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.0023 S13: -0.0367 REMARK 3 S21: -0.1008 S22: -0.0132 S23: -0.1113 REMARK 3 S31: 0.1619 S32: -0.0300 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3RQI COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB065253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZY2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.00608.A.A1 PW30798 AT 30.69 MG/ REMARK 280 ML AGAINST JCSG+ SCREEN CONDITION A6, 0.2 M LI2SO4, 0.1 M REMARK 280 PHOSPHATE/CITRATE PH 4.2, 20% PEG 1000 WITH 25% ETHYLENE GLYCOL REMARK 280 AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 220922A6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.80667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 31.80667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 136 REMARK 465 ASP A 137 REMARK 465 ARG A 138 REMARK 465 LYS A 176 REMARK 465 PRO A 177 REMARK 465 VAL A 178 REMARK 465 ARG A 179 REMARK 465 GLN A 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LEU A 139 CG CD1 CD2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 ILE A 144 CG1 CG2 CD1 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 217 O HOH A 269 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 305 DISTANCE = 5.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 181 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHD A 54 OP2 REMARK 620 2 ASP A 11 OD1 147.8 REMARK 620 3 HOH A 186 O 89.8 93.6 REMARK 620 4 HIS A 56 O 82.5 82.5 158.1 REMARK 620 5 PHD A 54 OD2 74.6 74.8 78.0 80.2 REMARK 620 6 CIT A 182 O7 136.8 74.3 73.5 125.3 136.0 REMARK 620 7 CIT A 182 O6 75.3 136.9 83.9 113.7 144.7 63.7 REMARK 620 8 CIT A 182 O1 116.5 82.8 134.8 66.3 141.7 62.1 69.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 185 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00608.A RELATED DB: TARGETDB DBREF 3RQI A 1 180 UNP Q3JXA5 Q3JXA5_BURP1 1 180 SEQADV 3RQI GLY A -3 UNP Q3JXA5 EXPRESSION TAG SEQADV 3RQI PRO A -2 UNP Q3JXA5 EXPRESSION TAG SEQADV 3RQI GLY A -1 UNP Q3JXA5 EXPRESSION TAG SEQADV 3RQI SER A 0 UNP Q3JXA5 EXPRESSION TAG SEQRES 1 A 184 GLY PRO GLY SER MET SER ASP LYS ASN PHE LEU VAL ILE SEQRES 2 A 184 ASP ASP ASN GLU VAL PHE ALA GLY THR LEU ALA ARG GLY SEQRES 3 A 184 LEU GLU ARG ARG GLY TYR ALA VAL ARG GLN ALA HIS ASN SEQRES 4 A 184 LYS ASP GLU ALA LEU LYS LEU ALA GLY ALA GLU LYS PHE SEQRES 5 A 184 GLU PHE ILE THR VAL PHD LEU HIS LEU GLY ASN ASP SER SEQRES 6 A 184 GLY LEU SER LEU ILE ALA PRO LEU CYS ASP LEU GLN PRO SEQRES 7 A 184 ASP ALA ARG ILE LEU VAL LEU THR GLY TYR ALA SER ILE SEQRES 8 A 184 ALA THR ALA VAL GLN ALA VAL LYS ASP GLY ALA ASP ASN SEQRES 9 A 184 TYR LEU ALA LYS PRO ALA ASN VAL GLU SER ILE LEU ALA SEQRES 10 A 184 ALA LEU GLN THR ASN ALA SER GLU VAL GLN ALA GLU GLU SEQRES 11 A 184 ALA LEU GLU ASN PRO VAL VAL LEU SER VAL ASP ARG LEU SEQRES 12 A 184 GLU TRP GLU HIS ILE GLN ARG VAL LEU ALA GLU ASN ASN SEQRES 13 A 184 ASN ASN ILE SER ALA THR ALA ARG ALA LEU ASN MET HIS SEQRES 14 A 184 ARG ARG THR LEU GLN ARG LYS LEU ALA LYS LYS PRO VAL SEQRES 15 A 184 ARG GLN MODRES 3RQI PHD A 54 ASP ASPARTYL PHOSPHATE HET PHD A 54 12 HET CA A 181 1 HET CIT A 182 13 HET SO4 A 183 5 HET SO4 A 184 5 HET GOL A 185 6 HETNAM PHD ASPARTYL PHOSPHATE HETNAM CA CALCIUM ION HETNAM CIT CITRIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PHD C4 H8 N O7 P FORMUL 2 CA CA 2+ FORMUL 3 CIT C6 H8 O7 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *127(H2 O) HELIX 1 1 ASN A 12 ARG A 26 1 15 HELIX 2 2 ASN A 35 GLY A 44 1 10 HELIX 3 3 LEU A 65 GLN A 73 1 9 HELIX 4 4 SER A 86 GLY A 97 1 12 HELIX 5 5 ASN A 107 LEU A 115 1 9 HELIX 6 6 ASN A 118 ASN A 130 1 13 HELIX 7 7 LEU A 139 ASN A 151 1 13 HELIX 8 8 ASN A 154 ASN A 163 1 10 HELIX 9 9 HIS A 165 ALA A 174 1 10 SHEET 1 A 5 ALA A 29 ALA A 33 0 SHEET 2 A 5 ASN A 5 ILE A 9 1 N VAL A 8 O ARG A 31 SHEET 3 A 5 PHE A 50 VAL A 53 1 O THR A 52 N LEU A 7 SHEET 4 A 5 ARG A 77 THR A 82 1 O LEU A 79 N ILE A 51 SHEET 5 A 5 ASN A 100 ALA A 103 1 O LEU A 102 N VAL A 80 SHEET 1 B 2 HIS A 56 LEU A 57 0 SHEET 2 B 2 ASP A 60 SER A 61 -1 O ASP A 60 N LEU A 57 LINK C VAL A 53 N PHD A 54 1555 1555 1.34 LINK C PHD A 54 N LEU A 55 1555 1555 1.33 LINK OP2 PHD A 54 CA CA A 181 1555 1555 2.27 LINK OD1 ASP A 11 CA CA A 181 1555 1555 2.34 LINK CA CA A 181 O HOH A 186 1555 1555 2.39 LINK O HIS A 56 CA CA A 181 1555 1555 2.42 LINK OD2 PHD A 54 CA CA A 181 1555 1555 2.43 LINK CA CA A 181 O7 CIT A 182 1555 1555 2.48 LINK CA CA A 181 O6 CIT A 182 1555 1555 2.53 LINK CA CA A 181 O1 CIT A 182 1555 1555 2.56 CISPEP 1 LYS A 104 PRO A 105 0 -1.41 SITE 1 AC1 5 ASP A 11 PHD A 54 HIS A 56 CIT A 182 SITE 2 AC1 5 HOH A 186 SITE 1 AC2 9 ASP A 11 ASN A 12 PHD A 54 HIS A 56 SITE 2 AC2 9 GLY A 58 TYR A 84 CA A 181 HOH A 186 SITE 3 AC2 9 HOH A 198 SITE 1 AC3 7 ARG A 77 LYS A 95 THR A 117 ASN A 118 SITE 2 AC3 7 GLU A 121 HOH A 193 HOH A 223 SITE 1 AC4 7 ALA A 85 SER A 86 ILE A 87 HIS A 165 SITE 2 AC4 7 ARG A 166 ARG A 167 HOH A 278 SITE 1 AC5 6 CYS A 70 GLN A 73 PRO A 74 ALA A 76 SITE 2 AC5 6 GLY A 97 ASP A 99 CRYST1 55.240 55.240 95.420 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018103 0.010452 0.000000 0.00000 SCALE2 0.000000 0.020903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010480 0.00000 MASTER 403 0 6 9 7 0 11 6 0 0 0 15 END