HEADER LYASE 29-MAR-11 3RBL TITLE CRYSTAL STRUCTURE OF HUMAN AROMATIC L-AMINO ACID DECARBOXYLASE (AADC) TITLE 2 IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC L-AMINO ACID DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AADC, DOPA DECARBOXYLASE, DDC; COMPND 5 EC: 4.1.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AADC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRCHIS2A KEYWDS APO ENZYME, APO FORM, OPEN CONFORMATION, OPEN DIMER, EXPOSED, KEYWDS 2 CONFORMATIONAL CHANGE, PARKINSON, AADC DEFICIENCY, DDC,, KEYWDS 3 DECARBOXYLASE, PLP, L-DOPA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GIARDINA,R.MONTIOLI,S.GIANNI,B.CELLINI,A.PAIARDINI,C.BORRI AUTHOR 2 VOLTATTORNI,F.CUTRUZZOLA REVDAT 2 04-JAN-12 3RBL 1 JRNL REVDAT 1 19-OCT-11 3RBL 0 JRNL AUTH G.GIARDINA,R.MONTIOLI,S.GIANNI,B.CELLINI,A.PAIARDINI, JRNL AUTH 2 C.B.VOLTATTORNI,F.CUTRUZZOLA JRNL TITL OPEN CONFORMATION OF HUMAN DOPA DECARBOXYLASE REVEALS THE JRNL TITL 2 MECHANISM OF PLP ADDITION TO GROUP II DECARBOXYLASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 20514 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22143761 JRNL DOI 10.1073/PNAS.1111456108 REMARK 2 REMARK 2 RESOLUTION. 3.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1368 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.87000 REMARK 3 B22 (A**2) : 1.87000 REMARK 3 B33 (A**2) : -3.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.589 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.479 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.816 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7130 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9645 ; 1.271 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 880 ; 5.961 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;35.851 ;23.344 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1213 ;19.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;18.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1059 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5381 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4412 ; 0.464 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7071 ; 0.919 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2718 ; 1.353 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2574 ; 2.396 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3RBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB064729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20098 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.240 REMARK 200 RESOLUTION RANGE LOW (A) : 127.025 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : 0.40200 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3RBF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OBTAINED FROM HOLOAADC IN 0.1 REMARK 280 M HEPES PH 7.0, 28-30% JEFFAMINE ED 2001 PH 7.0 WERE TRANSFERRED REMARK 280 IN A ML DROPLET TO YIELD APOAADC, VAPOR DIFFUSION FOLLOWED BY REMARK 280 SOAKING, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 89.82000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 89.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.73750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 89.82000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 89.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.21250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 89.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.82000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.73750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 89.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.82000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.21250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 102 REMARK 465 PHE A 103 REMARK 465 SER A 104 REMARK 465 TRP A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 THR A 323 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 PHE A 326 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 ASP A 329 REMARK 465 PRO A 330 REMARK 465 THR A 331 REMARK 465 TYR A 332 REMARK 465 LEU A 333 REMARK 465 LYS A 334 REMARK 465 HIS A 335 REMARK 465 SER A 336 REMARK 465 HIS A 337 REMARK 465 GLN A 338 REMARK 465 ASP A 339 REMARK 465 SER A 340 REMARK 465 GLY A 341 REMARK 465 LEU A 342 REMARK 465 ILE A 343 REMARK 465 THR A 344 REMARK 465 ASP A 345 REMARK 465 TYR A 346 REMARK 465 ARG A 347 REMARK 465 HIS A 348 REMARK 465 TRP A 349 REMARK 465 GLN A 350 REMARK 465 ILE A 351 REMARK 465 PRO A 352 REMARK 465 LEU A 353 REMARK 465 GLY A 354 REMARK 465 CYS B 100 REMARK 465 ILE B 101 REMARK 465 GLY B 102 REMARK 465 PHE B 103 REMARK 465 THR B 323 REMARK 465 GLY B 324 REMARK 465 ALA B 325 REMARK 465 PHE B 326 REMARK 465 ARG B 327 REMARK 465 LEU B 328 REMARK 465 ASP B 329 REMARK 465 PRO B 330 REMARK 465 THR B 331 REMARK 465 TYR B 332 REMARK 465 LEU B 333 REMARK 465 LYS B 334 REMARK 465 HIS B 335 REMARK 465 SER B 336 REMARK 465 HIS B 337 REMARK 465 GLN B 338 REMARK 465 ASP B 339 REMARK 465 SER B 340 REMARK 465 GLY B 341 REMARK 465 LEU B 342 REMARK 465 ILE B 343 REMARK 465 THR B 344 REMARK 465 ASP B 345 REMARK 465 TYR B 346 REMARK 465 ARG B 347 REMARK 465 HIS B 348 REMARK 465 TRP B 349 REMARK 465 GLN B 350 REMARK 465 ILE B 351 REMARK 465 PRO B 352 REMARK 465 LEU B 353 REMARK 465 GLY B 354 REMARK 465 ARG B 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 356 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 120 OD1 ASN A 134 1.79 REMARK 500 OD2 ASP B 189 OG SER B 211 1.94 REMARK 500 CE LYS A 124 OE1 GLU A 135 2.01 REMARK 500 O VAL B 29 O THR B 69 2.05 REMARK 500 O THR B 245 O CYS B 248 2.08 REMARK 500 ND1 HIS A 302 O CYS A 311 2.11 REMARK 500 CE2 PHE A 80 O CYS A 451 2.12 REMARK 500 OH TYR A 30 CD2 HIS A 434 2.16 REMARK 500 OD1 ASN B 134 N GLY B 142 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 236 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 75.02 -116.29 REMARK 500 PRO A 35 122.07 -33.99 REMARK 500 SER A 73 133.45 -38.27 REMARK 500 PHE A 77 40.31 -89.93 REMARK 500 ILE A 98 60.78 -109.24 REMARK 500 ALA A 131 -39.35 -38.89 REMARK 500 ALA A 137 11.58 87.54 REMARK 500 SER A 193 -39.45 -31.31 REMARK 500 ASP A 212 -159.04 -101.81 REMARK 500 GLU A 292 -37.08 -37.57 REMARK 500 TRP A 304 -12.22 -143.92 REMARK 500 PHE A 309 -37.18 -38.90 REMARK 500 LEU A 406 94.00 -165.83 REMARK 500 LYS A 431 -4.62 82.40 REMARK 500 ARG A 441 -132.92 54.01 REMARK 500 ASP B 32 52.31 -103.73 REMARK 500 PRO B 43 143.96 -39.28 REMARK 500 HIS B 72 11.45 -69.63 REMARK 500 PHE B 77 58.21 -93.72 REMARK 500 GLU B 135 45.35 -75.98 REMARK 500 LYS B 136 13.18 55.73 REMARK 500 ALA B 219 -61.35 74.60 REMARK 500 ALA B 273 -132.82 58.39 REMARK 500 LEU B 406 -154.94 -120.50 REMARK 500 ARG B 441 -125.57 60.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 481 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RBF RELATED DB: PDB REMARK 900 AADC WITH PLP NOT COVALENTLY BOUND TO CHAIN-A (OCCUPANCY= REMARK 900 0.5) REMARK 900 RELATED ID: 3RCH RELATED DB: PDB REMARK 900 AADC IN THE OPEN CONFORMATION WITH LLP AND PLP BOUND TO REMARK 900 CHAIN-A AND CHAIN-B RESPECTIVELY DBREF 3RBL A 1 480 UNP P20711 DDC_HUMAN 1 480 DBREF 3RBL B 1 480 UNP P20711 DDC_HUMAN 1 480 SEQRES 1 A 480 MET ASN ALA SER GLU PHE ARG ARG ARG GLY LYS GLU MET SEQRES 2 A 480 VAL ASP TYR VAL ALA ASN TYR MET GLU GLY ILE GLU GLY SEQRES 3 A 480 ARG GLN VAL TYR PRO ASP VAL GLU PRO GLY TYR LEU ARG SEQRES 4 A 480 PRO LEU ILE PRO ALA ALA ALA PRO GLN GLU PRO ASP THR SEQRES 5 A 480 PHE GLU ASP ILE ILE ASN ASP VAL GLU LYS ILE ILE MET SEQRES 6 A 480 PRO GLY VAL THR HIS TRP HIS SER PRO TYR PHE PHE ALA SEQRES 7 A 480 TYR PHE PRO THR ALA SER SER TYR PRO ALA MET LEU ALA SEQRES 8 A 480 ASP MET LEU CYS GLY ALA ILE GLY CYS ILE GLY PHE SER SEQRES 9 A 480 TRP ALA ALA SER PRO ALA CYS THR GLU LEU GLU THR VAL SEQRES 10 A 480 MET MET ASP TRP LEU GLY LYS MET LEU GLU LEU PRO LYS SEQRES 11 A 480 ALA PHE LEU ASN GLU LYS ALA GLY GLU GLY GLY GLY VAL SEQRES 12 A 480 ILE GLN GLY SER ALA SER GLU ALA THR LEU VAL ALA LEU SEQRES 13 A 480 LEU ALA ALA ARG THR LYS VAL ILE HIS ARG LEU GLN ALA SEQRES 14 A 480 ALA SER PRO GLU LEU THR GLN ALA ALA ILE MET GLU LYS SEQRES 15 A 480 LEU VAL ALA TYR SER SER ASP GLN ALA HIS SER SER VAL SEQRES 16 A 480 GLU ARG ALA GLY LEU ILE GLY GLY VAL LYS LEU LYS ALA SEQRES 17 A 480 ILE PRO SER ASP GLY ASN PHE ALA MET ARG ALA SER ALA SEQRES 18 A 480 LEU GLN GLU ALA LEU GLU ARG ASP LYS ALA ALA GLY LEU SEQRES 19 A 480 ILE PRO PHE PHE MET VAL ALA THR LEU GLY THR THR THR SEQRES 20 A 480 CYS CYS SER PHE ASP ASN LEU LEU GLU VAL GLY PRO ILE SEQRES 21 A 480 CYS ASN LYS GLU ASP ILE TRP LEU HIS VAL ASP ALA ALA SEQRES 22 A 480 TYR ALA GLY SER ALA PHE ILE CYS PRO GLU PHE ARG HIS SEQRES 23 A 480 LEU LEU ASN GLY VAL GLU PHE ALA ASP SER PHE ASN PHE SEQRES 24 A 480 ASN PRO HIS LYS TRP LEU LEU VAL ASN PHE ASP CYS SER SEQRES 25 A 480 ALA MET TRP VAL LYS LYS ARG THR ASP LEU THR GLY ALA SEQRES 26 A 480 PHE ARG LEU ASP PRO THR TYR LEU LYS HIS SER HIS GLN SEQRES 27 A 480 ASP SER GLY LEU ILE THR ASP TYR ARG HIS TRP GLN ILE SEQRES 28 A 480 PRO LEU GLY ARG ARG PHE ARG SER LEU LYS MET TRP PHE SEQRES 29 A 480 VAL PHE ARG MET TYR GLY VAL LYS GLY LEU GLN ALA TYR SEQRES 30 A 480 ILE ARG LYS HIS VAL GLN LEU SER HIS GLU PHE GLU SER SEQRES 31 A 480 LEU VAL ARG GLN ASP PRO ARG PHE GLU ILE CYS VAL GLU SEQRES 32 A 480 VAL ILE LEU GLY LEU VAL CYS PHE ARG LEU LYS GLY SER SEQRES 33 A 480 ASN LYS VAL ASN GLU ALA LEU LEU GLN ARG ILE ASN SER SEQRES 34 A 480 ALA LYS LYS ILE HIS LEU VAL PRO CYS HIS LEU ARG ASP SEQRES 35 A 480 LYS PHE VAL LEU ARG PHE ALA ILE CYS SER ARG THR VAL SEQRES 36 A 480 GLU SER ALA HIS VAL GLN ARG ALA TRP GLU HIS ILE LYS SEQRES 37 A 480 GLU LEU ALA ALA ASP VAL LEU ARG ALA GLU ARG GLU SEQRES 1 B 480 MET ASN ALA SER GLU PHE ARG ARG ARG GLY LYS GLU MET SEQRES 2 B 480 VAL ASP TYR VAL ALA ASN TYR MET GLU GLY ILE GLU GLY SEQRES 3 B 480 ARG GLN VAL TYR PRO ASP VAL GLU PRO GLY TYR LEU ARG SEQRES 4 B 480 PRO LEU ILE PRO ALA ALA ALA PRO GLN GLU PRO ASP THR SEQRES 5 B 480 PHE GLU ASP ILE ILE ASN ASP VAL GLU LYS ILE ILE MET SEQRES 6 B 480 PRO GLY VAL THR HIS TRP HIS SER PRO TYR PHE PHE ALA SEQRES 7 B 480 TYR PHE PRO THR ALA SER SER TYR PRO ALA MET LEU ALA SEQRES 8 B 480 ASP MET LEU CYS GLY ALA ILE GLY CYS ILE GLY PHE SER SEQRES 9 B 480 TRP ALA ALA SER PRO ALA CYS THR GLU LEU GLU THR VAL SEQRES 10 B 480 MET MET ASP TRP LEU GLY LYS MET LEU GLU LEU PRO LYS SEQRES 11 B 480 ALA PHE LEU ASN GLU LYS ALA GLY GLU GLY GLY GLY VAL SEQRES 12 B 480 ILE GLN GLY SER ALA SER GLU ALA THR LEU VAL ALA LEU SEQRES 13 B 480 LEU ALA ALA ARG THR LYS VAL ILE HIS ARG LEU GLN ALA SEQRES 14 B 480 ALA SER PRO GLU LEU THR GLN ALA ALA ILE MET GLU LYS SEQRES 15 B 480 LEU VAL ALA TYR SER SER ASP GLN ALA HIS SER SER VAL SEQRES 16 B 480 GLU ARG ALA GLY LEU ILE GLY GLY VAL LYS LEU LYS ALA SEQRES 17 B 480 ILE PRO SER ASP GLY ASN PHE ALA MET ARG ALA SER ALA SEQRES 18 B 480 LEU GLN GLU ALA LEU GLU ARG ASP LYS ALA ALA GLY LEU SEQRES 19 B 480 ILE PRO PHE PHE MET VAL ALA THR LEU GLY THR THR THR SEQRES 20 B 480 CYS CYS SER PHE ASP ASN LEU LEU GLU VAL GLY PRO ILE SEQRES 21 B 480 CYS ASN LYS GLU ASP ILE TRP LEU HIS VAL ASP ALA ALA SEQRES 22 B 480 TYR ALA GLY SER ALA PHE ILE CYS PRO GLU PHE ARG HIS SEQRES 23 B 480 LEU LEU ASN GLY VAL GLU PHE ALA ASP SER PHE ASN PHE SEQRES 24 B 480 ASN PRO HIS LYS TRP LEU LEU VAL ASN PHE ASP CYS SER SEQRES 25 B 480 ALA MET TRP VAL LYS LYS ARG THR ASP LEU THR GLY ALA SEQRES 26 B 480 PHE ARG LEU ASP PRO THR TYR LEU LYS HIS SER HIS GLN SEQRES 27 B 480 ASP SER GLY LEU ILE THR ASP TYR ARG HIS TRP GLN ILE SEQRES 28 B 480 PRO LEU GLY ARG ARG PHE ARG SER LEU LYS MET TRP PHE SEQRES 29 B 480 VAL PHE ARG MET TYR GLY VAL LYS GLY LEU GLN ALA TYR SEQRES 30 B 480 ILE ARG LYS HIS VAL GLN LEU SER HIS GLU PHE GLU SER SEQRES 31 B 480 LEU VAL ARG GLN ASP PRO ARG PHE GLU ILE CYS VAL GLU SEQRES 32 B 480 VAL ILE LEU GLY LEU VAL CYS PHE ARG LEU LYS GLY SER SEQRES 33 B 480 ASN LYS VAL ASN GLU ALA LEU LEU GLN ARG ILE ASN SER SEQRES 34 B 480 ALA LYS LYS ILE HIS LEU VAL PRO CYS HIS LEU ARG ASP SEQRES 35 B 480 LYS PHE VAL LEU ARG PHE ALA ILE CYS SER ARG THR VAL SEQRES 36 B 480 GLU SER ALA HIS VAL GLN ARG ALA TRP GLU HIS ILE LYS SEQRES 37 B 480 GLU LEU ALA ALA ASP VAL LEU ARG ALA GLU ARG GLU HET CL B 481 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- HELIX 1 1 ASN A 2 GLY A 23 1 22 HELIX 2 2 ILE A 24 ARG A 27 5 4 HELIX 3 3 LEU A 38 ILE A 42 5 5 HELIX 4 4 THR A 52 ILE A 64 1 13 HELIX 5 5 MET A 65 VAL A 68 5 4 HELIX 6 6 SER A 85 ILE A 98 1 14 HELIX 7 7 SER A 108 LEU A 126 1 19 HELIX 8 8 PRO A 129 LEU A 133 5 5 HELIX 9 9 SER A 147 SER A 171 1 25 HELIX 10 10 THR A 175 GLU A 181 1 7 HELIX 11 11 SER A 193 GLY A 203 1 11 HELIX 12 12 ARG A 218 ALA A 231 1 14 HELIX 13 13 ASN A 253 GLU A 264 1 12 HELIX 14 14 TYR A 274 CYS A 281 5 8 HELIX 15 15 PHE A 284 ASN A 289 5 6 HELIX 16 16 GLY A 290 ALA A 294 5 5 HELIX 17 17 ASN A 300 TRP A 304 5 5 HELIX 18 18 ARG A 358 ASP A 395 1 38 HELIX 19 19 SER A 416 LYS A 431 1 16 HELIX 20 20 GLU A 456 GLU A 480 1 25 HELIX 21 21 ASN B 2 ILE B 24 1 23 HELIX 22 22 LEU B 38 ILE B 42 5 5 HELIX 23 23 THR B 52 ILE B 64 1 13 HELIX 24 24 MET B 65 VAL B 68 5 4 HELIX 25 25 SER B 85 GLY B 99 1 15 HELIX 26 26 SER B 108 GLU B 127 1 20 HELIX 27 27 PRO B 129 LEU B 133 5 5 HELIX 28 28 SER B 147 SER B 171 1 25 HELIX 29 29 THR B 175 GLU B 181 1 7 HELIX 30 30 SER B 193 GLY B 203 1 11 HELIX 31 31 ALA B 219 ALA B 232 1 14 HELIX 32 32 ASN B 253 GLU B 264 1 12 HELIX 33 33 TYR B 274 ASN B 289 5 16 HELIX 34 34 GLY B 290 ALA B 294 5 5 HELIX 35 35 PRO B 301 LEU B 306 1 6 HELIX 36 36 ARG B 358 ASP B 395 1 38 HELIX 37 37 SER B 416 LYS B 431 1 16 HELIX 38 38 GLU B 456 ARG B 479 1 24 SHEET 1 A 7 GLY A 141 VAL A 143 0 SHEET 2 A 7 ALA A 313 VAL A 316 -1 O MET A 314 N VAL A 143 SHEET 3 A 7 SER A 296 PHE A 299 -1 N PHE A 297 O TRP A 315 SHEET 4 A 7 TRP A 267 ASP A 271 1 N VAL A 270 O SER A 296 SHEET 5 A 7 ILE A 235 THR A 242 1 N PHE A 237 O TRP A 267 SHEET 6 A 7 LEU A 183 SER A 188 1 N TYR A 186 O VAL A 240 SHEET 7 A 7 LYS A 205 ILE A 209 1 O ILE A 209 N SER A 187 SHEET 1 B 4 PHE A 398 ILE A 400 0 SHEET 2 B 4 LEU A 408 LEU A 413 -1 O ARG A 412 N GLU A 399 SHEET 3 B 4 LYS A 443 ALA A 449 -1 O LEU A 446 N PHE A 411 SHEET 4 B 4 CYS A 438 LEU A 440 -1 N LEU A 440 O LYS A 443 SHEET 1 C 5 PHE B 76 PHE B 77 0 SHEET 2 C 5 HIS B 434 LEU B 440 1 O HIS B 434 N PHE B 77 SHEET 3 C 5 LYS B 443 ALA B 449 -1 O LYS B 443 N LEU B 440 SHEET 4 C 5 LEU B 408 LEU B 413 -1 N VAL B 409 O PHE B 448 SHEET 5 C 5 PHE B 398 ILE B 400 -1 N GLU B 399 O ARG B 412 SHEET 1 D 7 GLY B 142 GLN B 145 0 SHEET 2 D 7 SER B 312 VAL B 316 -1 O MET B 314 N VAL B 143 SHEET 3 D 7 SER B 296 PHE B 299 -1 N PHE B 297 O TRP B 315 SHEET 4 D 7 TRP B 267 ALA B 273 1 N ALA B 272 O ASN B 298 SHEET 5 D 7 ILE B 235 THR B 242 1 N MET B 239 O HIS B 269 SHEET 6 D 7 LEU B 183 SER B 188 1 N VAL B 184 O ILE B 235 SHEET 7 D 7 LYS B 205 ILE B 209 1 O LYS B 205 N ALA B 185 SITE 1 AC1 2 LYS B 303 TRP B 304 CRYST1 179.640 179.640 74.950 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013342 0.00000 MASTER 435 0 1 38 23 0 1 6 0 0 0 74 END