HEADER TRANSFERASE/DNA 29-MAR-11 3RBD TITLE DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C BASE OPPOSITE TITLE 2 THE 3-METHYLCYTOSINE (M3C) LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'); COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'); COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA M3C-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC KEYWDS DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, DNA-DIRECTED KEYWDS 2 DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX, LESION KEYWDS 4 BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, DNTP-BINDING, 3- KEYWDS 5 METHYLCYTOSINE EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,D.J.PATEL REVDAT 2 19-JUN-13 3RBD 1 JRNL VERSN REVDAT 1 15-JUN-11 3RBD 0 JRNL AUTH O.RECHKOBLIT,J.C.DELANEY,J.M.ESSIGMANN,D.J.PATEL JRNL TITL IMPLICATIONS FOR DAMAGE RECOGNITION DURING DPO4-MEDIATED JRNL TITL 2 MUTAGENIC BYPASS OF M1G AND M3C LESIONS. JRNL REF STRUCTURE V. 19 821 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21645853 JRNL DOI 10.1016/J.STR.2011.03.020 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 35526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1947 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1089 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6870 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9455 ; 1.461 ; 2.204 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;34.723 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;17.918 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1080 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4613 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3411 ; 0.559 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5518 ; 0.803 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3459 ; 1.248 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3937 ; 2.043 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7338 1.5033 2.1986 REMARK 3 T TENSOR REMARK 3 T11: 0.0296 T22: 0.0346 REMARK 3 T33: 0.1385 T12: 0.0024 REMARK 3 T13: 0.0257 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.8250 L22: 1.5828 REMARK 3 L33: 1.3723 L12: -0.9807 REMARK 3 L13: -0.4114 L23: 0.1716 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.1997 S13: -0.0309 REMARK 3 S21: 0.1190 S22: 0.1020 S23: 0.0378 REMARK 3 S31: 0.0047 S32: 0.1669 S33: -0.0440 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1686 56.4067 39.5937 REMARK 3 T TENSOR REMARK 3 T11: 0.4340 T22: 0.5060 REMARK 3 T33: 0.2416 T12: -0.0537 REMARK 3 T13: -0.0182 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.8822 L22: 1.3340 REMARK 3 L33: 5.1267 L12: 0.3296 REMARK 3 L13: -0.9799 L23: -1.3314 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: -0.5303 S13: -0.2587 REMARK 3 S21: 0.3694 S22: -0.1849 S23: -0.1226 REMARK 3 S31: -0.2281 S32: 0.1458 S33: 0.1403 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 901 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0002 -6.4473 12.0409 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.3780 REMARK 3 T33: 0.1974 T12: 0.1470 REMARK 3 T13: -0.0505 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 2.5841 L22: 1.8412 REMARK 3 L33: 2.2847 L12: -0.7714 REMARK 3 L13: -0.5247 L23: 0.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.3714 S12: -0.8877 S13: -0.1316 REMARK 3 S21: 0.6037 S22: 0.2872 S23: -0.1833 REMARK 3 S31: 0.1947 S32: 0.5675 S33: 0.0841 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1806 H 1814 REMARK 3 RESIDUE RANGE : J 1905 J 1915 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6752 46.5447 43.5925 REMARK 3 T TENSOR REMARK 3 T11: 0.4117 T22: 0.7228 REMARK 3 T33: 0.5147 T12: 0.0018 REMARK 3 T13: -0.0737 T23: 0.2701 REMARK 3 L TENSOR REMARK 3 L11: 7.8838 L22: 5.4378 REMARK 3 L33: 7.4966 L12: -1.2522 REMARK 3 L13: -1.4880 L23: -3.8544 REMARK 3 S TENSOR REMARK 3 S11: -0.1240 S12: -1.1157 S13: -1.0918 REMARK 3 S21: 0.4614 S22: -0.7381 S23: -0.8564 REMARK 3 S31: 0.4715 S32: 0.9884 S33: 0.8621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB064721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3RB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE AND 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.66950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 900 REMARK 465 DG H 1802 REMARK 465 DT H 1803 REMARK 465 DC J 1900 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DA J 1903 REMARK 465 DA J 1904 REMARK 465 DA J 1916 REMARK 465 DA J 1917 REMARK 465 DC J 1918 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC E 901 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC E 907 O3' DC E 907 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 802 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG D 805 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 8.5 DEGREES REMARK 500 DC E 901 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC E 901 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT E 902 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT E 913 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DC E 915 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG H1805 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG H1806 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DC J1914 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 60.66 22.41 REMARK 500 GLU A 38 109.30 -51.58 REMARK 500 ASP A 39 14.58 82.58 REMARK 500 LEU A 68 69.74 -161.34 REMARK 500 ARG A 77 79.77 -111.81 REMARK 500 ASN A 234 20.59 -145.91 REMARK 500 ASP A 277 70.49 53.80 REMARK 500 LYS A 278 -21.42 82.70 REMARK 500 TYR B1010 54.04 21.01 REMARK 500 PHE B1011 -71.50 -39.82 REMARK 500 ASN B1020 83.74 -155.11 REMARK 500 ASP B1039 -2.03 79.70 REMARK 500 ASN B1047 150.51 -45.74 REMARK 500 SER B1103 -169.89 -173.86 REMARK 500 SER B1112 -30.04 -141.91 REMARK 500 VAL B1115 114.06 57.86 REMARK 500 ASP B1117 134.18 -178.79 REMARK 500 LYS B1159 -81.94 -42.35 REMARK 500 ASN B1161 71.17 42.48 REMARK 500 ASP B1231 -29.23 73.03 REMARK 500 ASN B1234 77.14 -109.63 REMARK 500 THR B1239 104.81 -39.10 REMARK 500 ASP B1277 85.29 47.38 REMARK 500 LYS B1278 -23.11 73.71 REMARK 500 ASP B1292 42.46 -87.55 REMARK 500 LEU B1293 5.81 57.71 REMARK 500 LYS B1339 77.44 60.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 8 O REMARK 620 2 ASP A 7 OD1 97.4 REMARK 620 3 ASP A 105 OD2 90.2 78.1 REMARK 620 4 DGT A 414 O1B 87.6 167.4 90.4 REMARK 620 5 DGT A 414 O2A 159.4 93.5 74.9 78.4 REMARK 620 6 DGT A 414 O1G 110.2 100.2 159.5 88.7 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B1008 O REMARK 620 2 ASP B1105 OD2 78.8 REMARK 620 3 ASP B1007 OD1 91.2 67.8 REMARK 620 4 DGT B1414 O1B 92.8 101.5 167.6 REMARK 620 5 DGT B1414 O2A 164.0 92.5 97.8 75.7 REMARK 620 6 DGT B1414 O3G 112.4 168.1 114.3 74.9 75.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 ILE B1186 O 90.1 REMARK 620 3 HOH B 7 O 83.5 65.6 REMARK 620 4 HOH B1516 O 86.3 77.4 141.5 REMARK 620 5 HOH B1512 O 77.3 125.5 60.5 151.1 REMARK 620 6 HOH B 5 O 84.9 164.2 128.4 87.3 67.9 REMARK 620 7 HOH H1514 O 154.4 86.1 71.9 117.3 84.4 104.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DGT B1414 O2A REMARK 620 2 ASP B1105 OD1 91.3 REMARK 620 3 GLU B1106 OE2 147.7 120.2 REMARK 620 4 ASP B1007 OD1 78.7 84.8 96.2 REMARK 620 5 ASP B1007 OD2 99.5 119.4 60.5 41.2 REMARK 620 6 HOH H 4 O 87.9 178.6 60.5 94.0 59.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 89.2 REMARK 620 3 HOH A 388 O 84.7 70.2 REMARK 620 4 HOH D 2 O 168.0 82.0 84.6 REMARK 620 5 HOH A 342 O 85.8 142.2 72.0 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD1 REMARK 620 2 DGT A 414 O2A 97.5 REMARK 620 3 ASP A 7 OD1 93.0 76.4 REMARK 620 4 ASP A 105 OD2 46.6 60.1 59.5 REMARK 620 5 ASP A 7 OD2 126.5 98.0 42.8 102.3 REMARK 620 6 GLU A 106 OE1 100.1 161.9 97.9 131.9 67.6 REMARK 620 7 HOH A 400 O 152.4 109.7 88.4 147.3 46.0 52.5 REMARK 620 8 HOH A 343 O 161.3 64.0 81.1 116.7 58.8 98.3 45.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RB4 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G REMARK 900 BASE OPPOSITE THE 3-METHYLCYTOSINE (M3C) LESION REMARK 900 RELATED ID: 3RB6 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER A REMARK 900 BASE OPPOSITE THE 3-METHYLCYTOSINE (M3C) LESION REMARK 900 RELATED ID: 3RAQ RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C REMARK 900 BASE OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RAX RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T REMARK 900 BASE OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB0 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G REMARK 900 BASE OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RB3 RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER A REMARK 900 BASE OPPOSITE THE 1-METHYLGUANINE (M1G) LESION DBREF 3RBD A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RBD B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RBD D 802 814 PDB 3RBD 3RBD 802 814 DBREF 3RBD H 1802 1814 PDB 3RBD 3RBD 1802 1814 DBREF 3RBD E 900 919 PDB 3RBD 3RBD 900 919 DBREF 3RBD J 1900 1919 PDB 3RBD 3RBD 1900 1919 SEQADV 3RBD GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3RBD GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG DOC SEQRES 1 E 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 E 20 DT DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG DOC SEQRES 1 J 20 DC DC DT DA DA DC ME6 DC DT DA DC DC DA SEQRES 2 J 20 DT DC DC DA DA DC DC MODRES 3RBD DOC D 814 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 3RBD ME6 E 906 DC MODRES 3RBD DOC H 1814 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 3RBD ME6 J 1906 DC HET DOC D 814 18 HET ME6 E 906 20 HET DOC H1814 18 HET ME6 J1906 20 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET EPE D 1 15 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM ME6 [(2R,3S,5R)-5-(4-AZANYL-3-METHYL-2-OXO-PYRIMIDIN-3-IUM- HETNAM 2 ME6 1-YL)-3-HYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN HETNAM 3 ME6 PHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 DOC 2(C9 H14 N3 O6 P) FORMUL 3 ME6 2(C10 H17 N3 O7 P 1+) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 11 EPE C8 H18 N2 O4 S FORMUL 16 HOH *120(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 MET A 157 1 11 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 GLY A 198 1 12 HELIX 11 11 LYS A 201 ILE A 208 5 8 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 ASN B 1020 1 11 HELIX 17 17 PRO B 1021 LYS B 1024 5 4 HELIX 18 18 ASN B 1047 LYS B 1052 1 6 HELIX 19 19 PRO B 1060 LEU B 1068 1 9 HELIX 20 20 ARG B 1077 GLU B 1094 1 18 HELIX 21 21 ASP B 1117 LYS B 1137 1 21 HELIX 22 22 ASN B 1147 ALA B 1158 1 12 HELIX 23 23 ASP B 1167 LEU B 1178 1 12 HELIX 24 24 ASP B 1179 VAL B 1183 5 5 HELIX 25 25 GLY B 1187 LEU B 1197 1 11 HELIX 26 26 LEU B 1202 SER B 1207 5 6 HELIX 27 27 GLU B 1209 GLY B 1218 1 10 HELIX 28 28 GLY B 1218 ARG B 1230 1 13 HELIX 29 29 ASN B 1257 ASP B 1277 1 21 HELIX 30 30 SER B 1307 LEU B 1323 1 17 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 30 O ALA A 44 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 ILE B1101 0 SHEET 2 D 5 GLU B1106 ILE B1111 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 ILE B1002 PHE B1008 -1 N ILE B1002 O ILE B1111 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 GLY B1162 VAL B1165 1 O LYS B1164 N VAL B1142 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O ALA B1044 SHEET 3 E 3 VAL B1072 PRO B1075 1 O VAL B1072 N VAL B1029 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1287 O GLY B1334 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DG D 813 P DOC D 814 1555 1555 1.60 LINK O3' DC E 905 P ME6 E 906 1555 1555 1.59 LINK O3' ME6 E 906 P DC E 907 1555 1555 1.61 LINK O3' DG H1813 P DOC H1814 1555 1555 1.61 LINK O3' DC J1905 P ME6 J1906 1555 1555 1.61 LINK O3' ME6 J1906 P DC J1907 1555 1555 1.59 LINK O PHE A 8 CA CA A 416 1555 1555 2.30 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.31 LINK O PHE B1008 CA CA B1416 1555 1555 2.31 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.31 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.32 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.32 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.32 LINK O ALA B1181 CA CA B1417 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.32 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.32 LINK O ALA A 181 CA CA A 417 1555 1555 2.33 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.33 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.34 LINK O ILE A 186 CA CA A 417 1555 1555 2.34 LINK O3G DGT B1414 CA CA B1416 1555 1555 2.55 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.55 LINK O ILE B1186 CA CA B1417 1555 1555 2.57 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.59 LINK O1G DGT A 414 CA CA A 416 1555 1555 2.67 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.85 LINK OD1 ASP A 7 CA CA A 415 1555 1555 2.86 LINK OD2 ASP A 105 CA CA A 415 1555 1555 3.01 LINK OD2 ASP A 7 CA CA A 415 1555 1555 3.08 LINK OD1 ASP B1007 CA CA B1415 1555 1555 3.11 LINK OD2 ASP B1007 CA CA B1415 1555 1555 3.11 LINK OE1 GLU A 106 CA CA A 415 1555 1555 3.17 LINK CA CA A 417 O HOH A 388 1555 1555 2.24 LINK CA CA A 417 O HOH D 2 1555 1555 2.37 LINK CA CA A 415 O HOH A 400 1555 1555 2.40 LINK CA CA B1417 O HOH B 7 1555 1555 2.41 LINK CA CA B1417 O HOH B1516 1555 1555 2.41 LINK CA CA B1415 O HOH H 4 1555 1555 2.47 LINK CA CA B1417 O HOH B1512 1555 1555 2.51 LINK CA CA A 417 O HOH A 342 1555 1555 2.52 LINK CA CA B1417 O HOH B 5 1555 1555 2.54 LINK CA CA B1417 O HOH H1514 1555 1555 2.80 LINK CA CA A 415 O HOH A 343 1555 1555 3.12 CISPEP 1 LYS A 159 PRO A 160 0 -1.55 SITE 1 AC1 19 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 19 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 19 ARG A 51 ASP A 105 LYS A 159 HOH A 343 SITE 4 AC1 19 HOH A 360 HOH A 399 CA A 415 CA A 416 SITE 5 AC1 19 DOC D 814 DC E 905 ME6 E 906 SITE 1 AC2 6 ASP A 7 ASP A 105 GLU A 106 HOH A 400 SITE 2 AC2 6 DGT A 414 CA A 416 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 342 HOH A 388 SITE 2 AC4 5 HOH D 2 SITE 1 AC5 11 SER A 103 ILE A 104 ARG A 240 HOH D 12 SITE 2 AC5 11 HOH D 75 HOH D 102 DA D 812 DG D 813 SITE 3 AC5 11 DOC D 814 DT E 908 DA E 909 SITE 1 AC6 17 ASP B1007 PHE B1008 TYR B1010 PHE B1011 SITE 2 AC6 17 TYR B1012 VAL B1032 ALA B1044 THR B1045 SITE 3 AC6 17 TYR B1048 ARG B1051 ASP B1105 CA B1415 SITE 4 AC6 17 CA B1416 HOH B1501 DOC H1814 DC J1905 SITE 5 AC6 17 ME6 J1906 SITE 1 AC7 6 ASP B1007 ASP B1105 GLU B1106 DGT B1414 SITE 2 AC7 6 CA B1416 HOH H 4 SITE 1 AC8 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC8 5 CA B1415 SITE 1 AC9 7 HOH B 5 HOH B 7 ALA B1181 ILE B1186 SITE 2 AC9 7 HOH B1512 HOH B1516 HOH H1514 CRYST1 52.852 109.339 100.680 90.00 101.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018921 0.000000 0.003719 0.00000 SCALE2 0.000000 0.009146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010123 0.00000 MASTER 564 0 13 30 24 0 25 6 0 0 0 60 END