HEADER DNA 23-MAR-11 3R86 TITLE CRYSTAL STRUCTURE OF D(CCGGTACCGG)2 AS B-DNA DUPLEX GROWN WITH 5 MM TITLE 2 COCL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS DUPLEX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR S.VENKADESH,P.K.MANDAL,N.GAUTHAM REVDAT 2 14-FEB-18 3R86 1 REMARK REVDAT 1 06-APR-11 3R86 0 JRNL AUTH S.VENKADESH,P.K.MANDAL,N.GAUTHAM JRNL TITL CRYSTAL STRUCTURE OF D(CCGGTACCGG)2 AS B-DNA DUPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 1310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 72 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.6550 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.8920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.96000 REMARK 3 B22 (A**2) : -7.96000 REMARK 3 B33 (A**2) : 15.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.384 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 452 ; 0.029 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 694 ; 3.900 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 78 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 210 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.485 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H+K,-K,-L REMARK 3 TWIN FRACTION : 0.515 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.604 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : AUTOMAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : 0.40200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: B-DNA FIBER MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM DNA, 50MM SODIUM CACODYLATE REMARK 280 BUFFER, 5MM COCL2,1MM SPERMINE, 50% MPD, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.21600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.43200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.82400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.04000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.60800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 2 C5' DC A 2 C4' 0.050 REMARK 500 DC A 2 N1 DC A 2 C2 0.097 REMARK 500 DC A 2 C2 DC A 2 N3 0.058 REMARK 500 DC A 2 N3 DC A 2 C4 0.048 REMARK 500 DC A 2 C4 DC A 2 C5 0.057 REMARK 500 DG A 3 O3' DG A 3 C3' 0.154 REMARK 500 DG A 3 C2 DG A 3 N3 0.055 REMARK 500 DG A 3 C5 DG A 3 N7 0.043 REMARK 500 DG A 3 N7 DG A 3 C8 0.038 REMARK 500 DG A 3 N9 DG A 3 C4 0.053 REMARK 500 DG A 4 C5' DG A 4 C4' 0.046 REMARK 500 DG A 4 N9 DG A 4 C4 0.054 REMARK 500 DT A 5 C5' DT A 5 C4' 0.059 REMARK 500 DG A 10 P DG A 10 O5' 0.067 REMARK 500 DG B 3 C6 DG B 3 N1 0.043 REMARK 500 DT B 5 O3' DT B 5 C3' -0.057 REMARK 500 DT B 5 O3' DA B 6 P -0.207 REMARK 500 DA B 6 P DA B 6 O5' -0.162 REMARK 500 DC B 7 C5' DC B 7 C4' 0.046 REMARK 500 DC B 7 N1 DC B 7 C2 0.076 REMARK 500 DC B 7 N3 DC B 7 C4 0.063 REMARK 500 DC B 7 C4 DC B 7 C5 0.062 REMARK 500 DC B 8 P DC B 8 O5' 0.062 REMARK 500 DC B 8 C5' DC B 8 C4' 0.069 REMARK 500 DC B 8 C1' DC B 8 N1 0.126 REMARK 500 DC B 8 C2 DC B 8 O2 0.069 REMARK 500 DC B 8 N1 DC B 8 C2 0.060 REMARK 500 DC B 8 N1 DC B 8 C6 0.057 REMARK 500 DC B 8 C2 DC B 8 N3 0.070 REMARK 500 DC B 8 N3 DC B 8 C4 0.057 REMARK 500 DG B 9 O3' DG B 9 C3' 0.113 REMARK 500 DG B 10 N9 DG B 10 C4 0.051 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC A 2 O4' - C4' - C3' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC A 2 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = -8.6 DEGREES REMARK 500 DC A 2 N1 - C2 - O2 ANGL. DEV. = 8.6 DEGREES REMARK 500 DC A 2 N3 - C2 - O2 ANGL. DEV. = -8.2 DEGREES REMARK 500 DC A 2 C6 - N1 - C1' ANGL. DEV. = -12.6 DEGREES REMARK 500 DC A 2 C2 - N1 - C1' ANGL. DEV. = 13.1 DEGREES REMARK 500 DC A 2 C3' - O3' - P ANGL. DEV. = 11.7 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG A 3 N3 - C4 - C5 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG A 3 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG A 3 C8 - N9 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 3 N1 - C2 - N2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 3 N3 - C2 - N2 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG A 3 N1 - C6 - O6 ANGL. DEV. = -7.6 DEGREES REMARK 500 DG A 3 C5 - C6 - O6 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG A 3 C3' - O3' - P ANGL. DEV. = 13.5 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 7.9 DEGREES REMARK 500 DG A 4 N3 - C4 - C5 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG A 4 N3 - C4 - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG A 4 C6 - C5 - N7 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG A 4 N1 - C2 - N2 ANGL. DEV. = -8.9 DEGREES REMARK 500 DG A 4 N3 - C2 - N2 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT A 5 C3' - C2' - C1' ANGL. DEV. = -11.4 DEGREES REMARK 500 DT A 5 N1 - C1' - C2' ANGL. DEV. = 11.2 DEGREES REMARK 500 DT A 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA A 6 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = -8.2 DEGREES REMARK 500 DC A 7 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DC A 7 C2 - N3 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC A 7 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DC A 8 O4' - C4' - C3' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC A 8 C2 - N1 - C1' ANGL. DEV. = 7.1 DEGREES REMARK 500 DG A 9 C5' - C4' - O4' ANGL. DEV. = 10.5 DEGREES REMARK 500 DG A 9 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG A 9 O4' - C1' - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 DG A 9 C4 - C5 - N7 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 9 C8 - N9 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG A 9 N9 - C4 - C5 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG A 9 N3 - C2 - N2 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC B 1 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC B 2 N1 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC B 2 C6 - N1 - C1' ANGL. DEV. = -11.4 DEGREES REMARK 500 DC B 2 C2 - N1 - C1' ANGL. DEV. = 9.8 DEGREES REMARK 500 DG B 3 C4' - C3' - C2' ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 11 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 3 N7 REMARK 620 2 HOH B 14 O 78.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 12 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 9 N7 REMARK 620 2 HOH B 15 O 57.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 11 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 C8 REMARK 620 2 HOH A 13 O 78.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 12 DBREF 3R86 A 1 10 PDB 3R86 3R86 1 10 DBREF 3R86 B 1 10 PDB 3R86 3R86 1 10 SEQRES 1 A 10 DC DC DG DG DT DA DC DC DG DG SEQRES 1 B 10 DC DC DG DG DT DA DC DC DG DG HET CO A 11 1 HET CO B 11 1 HET CO B 12 1 HETNAM CO COBALT (II) ION FORMUL 3 CO 3(CO 2+) FORMUL 6 HOH *11(H2 O) LINK N7 DG B 3 CO CO B 11 1555 1555 2.52 LINK N7 DG B 9 CO CO B 12 1555 1555 2.56 LINK C8 DG A 3 CO CO A 11 1555 1555 2.79 LINK CO CO A 11 O HOH A 13 1555 1555 2.23 LINK CO CO B 11 O HOH B 14 1555 1555 2.38 LINK CO CO B 12 O HOH B 15 1555 1555 2.77 SITE 1 AC1 2 DG A 3 HOH A 13 SITE 1 AC2 2 DG B 3 HOH B 14 SITE 1 AC3 2 DG B 9 HOH B 15 CRYST1 32.756 32.756 93.648 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030529 0.017626 0.000000 0.00000 SCALE2 0.000000 0.035252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010678 0.00000 MASTER 413 0 3 0 0 0 3 6 0 0 0 2 END