HEADER TRANSFERASE 22-MAR-11 3R7D TITLE CRYSTAL STRUCTURE OF UNLIGANDED ASPARTATE TRANSCARBAMOYLASE FROM TITLE 2 BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ASPARTATE TRANSCARBAMYLASE, ATCASE; COMPND 5 EC: 2.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: PYRB, BSU15490; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE TRANSCARBAMOYLASE, TRANSFERASE, CATALYTIC CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.PULEO,K.M.HARRIS,G.M.COCKRELL,E.R.KANTROWITZ REVDAT 4 08-NOV-17 3R7D 1 REMARK REVDAT 3 10-AUG-11 3R7D 1 JRNL VERSN REVDAT 2 29-JUN-11 3R7D 1 JRNL REVDAT 1 08-JUN-11 3R7D 0 JRNL AUTH K.M.HARRIS,G.M.COCKRELL,D.E.PULEO,E.R.KANTROWITZ JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF THE COMPLETE CATALYTIC CYCLE JRNL TITL 2 OF THE UNREGULATED ASPARTATE TRANSCARBAMOYLASE FROM BACILLUS JRNL TITL 3 SUBTILIS. JRNL REF J.MOL.BIOL. V. 411 190 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21663747 JRNL DOI 10.1016/J.JMB.2011.05.036 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_625 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 98154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1852 - 6.8161 1.00 3194 172 0.1795 0.1786 REMARK 3 2 6.8161 - 5.4124 1.00 3144 159 0.2011 0.2186 REMARK 3 3 5.4124 - 4.7288 1.00 3099 184 0.1525 0.1708 REMARK 3 4 4.7288 - 4.2968 1.00 3163 139 0.1240 0.1465 REMARK 3 5 4.2968 - 3.9889 1.00 3138 152 0.1309 0.1586 REMARK 3 6 3.9889 - 3.7538 1.00 3142 156 0.1473 0.1706 REMARK 3 7 3.7538 - 3.5659 1.00 3117 179 0.1537 0.1993 REMARK 3 8 3.5659 - 3.4107 1.00 3087 171 0.1602 0.1770 REMARK 3 9 3.4107 - 3.2794 1.00 3140 158 0.1716 0.2222 REMARK 3 10 3.2794 - 3.1663 1.00 3086 159 0.1768 0.1876 REMARK 3 11 3.1663 - 3.0673 1.00 3148 181 0.1762 0.2096 REMARK 3 12 3.0673 - 2.9796 1.00 3092 166 0.1796 0.2273 REMARK 3 13 2.9796 - 2.9012 1.00 3098 171 0.1807 0.2236 REMARK 3 14 2.9012 - 2.8304 1.00 3124 142 0.1759 0.1805 REMARK 3 15 2.8304 - 2.7661 1.00 3150 182 0.1813 0.2158 REMARK 3 16 2.7661 - 2.7072 1.00 3058 155 0.1812 0.2421 REMARK 3 17 2.7072 - 2.6531 1.00 3137 169 0.1748 0.2040 REMARK 3 18 2.6531 - 2.6030 1.00 3129 144 0.1703 0.1956 REMARK 3 19 2.6030 - 2.5565 1.00 3037 165 0.1714 0.2179 REMARK 3 20 2.5565 - 2.5132 1.00 3164 156 0.1750 0.2112 REMARK 3 21 2.5132 - 2.4727 1.00 3114 175 0.1832 0.1873 REMARK 3 22 2.4727 - 2.4346 1.00 3052 160 0.1783 0.2115 REMARK 3 23 2.4346 - 2.3988 1.00 3166 176 0.1815 0.2071 REMARK 3 24 2.3988 - 2.3650 1.00 3077 170 0.1837 0.2077 REMARK 3 25 2.3650 - 2.3331 1.00 3052 156 0.1864 0.2414 REMARK 3 26 2.3331 - 2.3028 1.00 3125 160 0.1959 0.2355 REMARK 3 27 2.3028 - 2.2740 1.00 3122 157 0.2036 0.2521 REMARK 3 28 2.2740 - 2.2466 1.00 3107 162 0.2115 0.2421 REMARK 3 29 2.2466 - 2.2205 1.00 3023 161 0.2083 0.2245 REMARK 3 30 2.2205 - 2.1960 0.94 2968 164 0.2170 0.2527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.55980 REMARK 3 B22 (A**2) : -12.15880 REMARK 3 B33 (A**2) : 5.59900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.23400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7108 REMARK 3 ANGLE : 1.012 9601 REMARK 3 CHIRALITY : 0.071 1093 REMARK 3 PLANARITY : 0.004 1251 REMARK 3 DIHEDRAL : 14.872 2688 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3R7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.196 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 126.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.50800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 126.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 76.50800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 292 REMARK 465 VAL A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 GLY A 296 REMARK 465 GLU A 297 REMARK 465 ALA A 298 REMARK 465 ALA A 299 REMARK 465 TYR A 300 REMARK 465 VAL A 301 REMARK 465 ILE A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 ASN B 292 REMARK 465 VAL B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 GLY B 296 REMARK 465 GLU B 297 REMARK 465 ALA B 298 REMARK 465 ALA B 299 REMARK 465 TYR B 300 REMARK 465 VAL B 301 REMARK 465 ILE B 302 REMARK 465 SER B 303 REMARK 465 HIS B 304 REMARK 465 ASN C 292 REMARK 465 VAL C 293 REMARK 465 LYS C 294 REMARK 465 ARG C 295 REMARK 465 GLY C 296 REMARK 465 GLU C 297 REMARK 465 ALA C 298 REMARK 465 ALA C 299 REMARK 465 TYR C 300 REMARK 465 VAL C 301 REMARK 465 ILE C 302 REMARK 465 SER C 303 REMARK 465 HIS C 304 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 13 CD REMARK 480 GLN A 23 CD REMARK 480 ASP A 69 CG REMARK 480 GLU A 107 CD REMARK 480 GLU A 108 CD REMARK 480 GLU A 183 CD REMARK 480 GLU A 224 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 458 O HOH B 520 1.87 REMARK 500 O HOH B 365 O HOH C 386 1.88 REMARK 500 O HOH C 352 O HOH C 353 1.93 REMARK 500 O HOH B 398 O HOH B 425 1.95 REMARK 500 OE1 GLU B 89 O HOH B 409 1.98 REMARK 500 O HOH A 403 O HOH A 462 2.04 REMARK 500 O4 PO4 A 306 O HOH A 312 2.04 REMARK 500 O HOH A 557 O HOH A 575 2.06 REMARK 500 O HOH C 316 O HOH C 344 2.06 REMARK 500 NZ LYS A 29 O HOH A 506 2.07 REMARK 500 OE1 GLU C 264 O HOH C 412 2.08 REMARK 500 O HOH B 485 O HOH B 533 2.11 REMARK 500 O HOH B 468 O HOH B 538 2.12 REMARK 500 O HOH B 444 O HOH B 466 2.14 REMARK 500 OG1 THR C 193 O HOH C 398 2.15 REMARK 500 NZ LYS B 241 O HOH B 411 2.17 REMARK 500 O HOH C 483 O HOH C 491 2.17 REMARK 500 O HOH B 429 O HOH C 358 2.18 REMARK 500 OE1 GLU B 238 O HOH B 516 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 188 83.98 -69.83 REMARK 500 ASN A 189 -92.92 60.69 REMARK 500 PHE A 191 -14.83 72.87 REMARK 500 ALA A 250 157.79 67.92 REMARK 500 VAL A 256 -76.70 -115.84 REMARK 500 GLU B 215 -67.26 -97.30 REMARK 500 GLN B 218 -2.20 67.27 REMARK 500 GLN B 218 -2.20 63.90 REMARK 500 VAL B 221 116.07 -27.95 REMARK 500 ALA B 250 160.41 69.27 REMARK 500 VAL B 256 -78.28 -111.76 REMARK 500 SER C 47 92.26 -163.76 REMARK 500 GLU C 188 74.28 -111.86 REMARK 500 GLN C 213 -154.42 -71.50 REMARK 500 GLU C 215 -167.27 -176.29 REMARK 500 ARG C 216 -140.97 72.56 REMARK 500 SER C 219 93.94 -63.74 REMARK 500 VAL C 221 67.87 39.24 REMARK 500 SER C 222 108.58 -10.69 REMARK 500 ALA C 250 156.11 71.01 REMARK 500 VAL C 256 -82.94 -111.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R7F RELATED DB: PDB REMARK 900 RELATED ID: 3R7L RELATED DB: PDB DBREF 3R7D A 1 304 UNP P05654 PYRB_BACSU 1 304 DBREF 3R7D B 1 304 UNP P05654 PYRB_BACSU 1 304 DBREF 3R7D C 1 304 UNP P05654 PYRB_BACSU 1 304 SEQRES 1 A 304 MET LYS HIS LEU THR THR MET SER GLU LEU SER THR GLU SEQRES 2 A 304 GLU ILE LYS ASP LEU LEU GLN THR ALA GLN GLU LEU LYS SEQRES 3 A 304 SER GLY LYS THR ASP ASN GLN LEU THR GLY LYS PHE ALA SEQRES 4 A 304 ALA ASN LEU PHE PHE GLU PRO SER THR ARG THR ARG PHE SEQRES 5 A 304 SER PHE GLU VAL ALA GLU LYS LYS LEU GLY MET ASN VAL SEQRES 6 A 304 LEU ASN LEU ASP GLY THR SER THR SER VAL GLN LYS GLY SEQRES 7 A 304 GLU THR LEU TYR ASP THR ILE ARG THR LEU GLU SER ILE SEQRES 8 A 304 GLY VAL ASP VAL CYS VAL ILE ARG HIS SER GLU ASP GLU SEQRES 9 A 304 TYR TYR GLU GLU LEU VAL SER GLN VAL ASN ILE PRO ILE SEQRES 10 A 304 LEU ASN ALA GLY ASP GLY CYS GLY GLN HIS PRO THR GLN SEQRES 11 A 304 SER LEU LEU ASP LEU MET THR ILE TYR GLU GLU PHE ASN SEQRES 12 A 304 THR PHE LYS GLY LEU THR VAL SER ILE HIS GLY ASP ILE SEQRES 13 A 304 LYS HIS SER ARG VAL ALA ARG SER ASN ALA GLU VAL LEU SEQRES 14 A 304 THR ARG LEU GLY ALA ARG VAL LEU PHE SER GLY PRO SER SEQRES 15 A 304 GLU TRP GLN ASP GLU GLU ASN THR PHE GLY THR TYR VAL SEQRES 16 A 304 SER MET ASP GLU ALA VAL GLU SER SER ASP VAL VAL MET SEQRES 17 A 304 LEU LEU ARG ILE GLN ASN GLU ARG HIS GLN SER ALA VAL SEQRES 18 A 304 SER GLN GLU GLY TYR LEU ASN LYS TYR GLY LEU THR VAL SEQRES 19 A 304 GLU ARG ALA GLU ARG MET LYS ARG HIS ALA ILE ILE MET SEQRES 20 A 304 HIS PRO ALA PRO VAL ASN ARG GLY VAL GLU ILE ASP ASP SEQRES 21 A 304 SER LEU VAL GLU SER GLU LYS SER ARG ILE PHE LYS GLN SEQRES 22 A 304 MET LYS ASN GLY VAL PHE ILE ARG MET ALA VAL ILE GLN SEQRES 23 A 304 ARG ALA LEU GLN THR ASN VAL LYS ARG GLY GLU ALA ALA SEQRES 24 A 304 TYR VAL ILE SER HIS SEQRES 1 B 304 MET LYS HIS LEU THR THR MET SER GLU LEU SER THR GLU SEQRES 2 B 304 GLU ILE LYS ASP LEU LEU GLN THR ALA GLN GLU LEU LYS SEQRES 3 B 304 SER GLY LYS THR ASP ASN GLN LEU THR GLY LYS PHE ALA SEQRES 4 B 304 ALA ASN LEU PHE PHE GLU PRO SER THR ARG THR ARG PHE SEQRES 5 B 304 SER PHE GLU VAL ALA GLU LYS LYS LEU GLY MET ASN VAL SEQRES 6 B 304 LEU ASN LEU ASP GLY THR SER THR SER VAL GLN LYS GLY SEQRES 7 B 304 GLU THR LEU TYR ASP THR ILE ARG THR LEU GLU SER ILE SEQRES 8 B 304 GLY VAL ASP VAL CYS VAL ILE ARG HIS SER GLU ASP GLU SEQRES 9 B 304 TYR TYR GLU GLU LEU VAL SER GLN VAL ASN ILE PRO ILE SEQRES 10 B 304 LEU ASN ALA GLY ASP GLY CYS GLY GLN HIS PRO THR GLN SEQRES 11 B 304 SER LEU LEU ASP LEU MET THR ILE TYR GLU GLU PHE ASN SEQRES 12 B 304 THR PHE LYS GLY LEU THR VAL SER ILE HIS GLY ASP ILE SEQRES 13 B 304 LYS HIS SER ARG VAL ALA ARG SER ASN ALA GLU VAL LEU SEQRES 14 B 304 THR ARG LEU GLY ALA ARG VAL LEU PHE SER GLY PRO SER SEQRES 15 B 304 GLU TRP GLN ASP GLU GLU ASN THR PHE GLY THR TYR VAL SEQRES 16 B 304 SER MET ASP GLU ALA VAL GLU SER SER ASP VAL VAL MET SEQRES 17 B 304 LEU LEU ARG ILE GLN ASN GLU ARG HIS GLN SER ALA VAL SEQRES 18 B 304 SER GLN GLU GLY TYR LEU ASN LYS TYR GLY LEU THR VAL SEQRES 19 B 304 GLU ARG ALA GLU ARG MET LYS ARG HIS ALA ILE ILE MET SEQRES 20 B 304 HIS PRO ALA PRO VAL ASN ARG GLY VAL GLU ILE ASP ASP SEQRES 21 B 304 SER LEU VAL GLU SER GLU LYS SER ARG ILE PHE LYS GLN SEQRES 22 B 304 MET LYS ASN GLY VAL PHE ILE ARG MET ALA VAL ILE GLN SEQRES 23 B 304 ARG ALA LEU GLN THR ASN VAL LYS ARG GLY GLU ALA ALA SEQRES 24 B 304 TYR VAL ILE SER HIS SEQRES 1 C 304 MET LYS HIS LEU THR THR MET SER GLU LEU SER THR GLU SEQRES 2 C 304 GLU ILE LYS ASP LEU LEU GLN THR ALA GLN GLU LEU LYS SEQRES 3 C 304 SER GLY LYS THR ASP ASN GLN LEU THR GLY LYS PHE ALA SEQRES 4 C 304 ALA ASN LEU PHE PHE GLU PRO SER THR ARG THR ARG PHE SEQRES 5 C 304 SER PHE GLU VAL ALA GLU LYS LYS LEU GLY MET ASN VAL SEQRES 6 C 304 LEU ASN LEU ASP GLY THR SER THR SER VAL GLN LYS GLY SEQRES 7 C 304 GLU THR LEU TYR ASP THR ILE ARG THR LEU GLU SER ILE SEQRES 8 C 304 GLY VAL ASP VAL CYS VAL ILE ARG HIS SER GLU ASP GLU SEQRES 9 C 304 TYR TYR GLU GLU LEU VAL SER GLN VAL ASN ILE PRO ILE SEQRES 10 C 304 LEU ASN ALA GLY ASP GLY CYS GLY GLN HIS PRO THR GLN SEQRES 11 C 304 SER LEU LEU ASP LEU MET THR ILE TYR GLU GLU PHE ASN SEQRES 12 C 304 THR PHE LYS GLY LEU THR VAL SER ILE HIS GLY ASP ILE SEQRES 13 C 304 LYS HIS SER ARG VAL ALA ARG SER ASN ALA GLU VAL LEU SEQRES 14 C 304 THR ARG LEU GLY ALA ARG VAL LEU PHE SER GLY PRO SER SEQRES 15 C 304 GLU TRP GLN ASP GLU GLU ASN THR PHE GLY THR TYR VAL SEQRES 16 C 304 SER MET ASP GLU ALA VAL GLU SER SER ASP VAL VAL MET SEQRES 17 C 304 LEU LEU ARG ILE GLN ASN GLU ARG HIS GLN SER ALA VAL SEQRES 18 C 304 SER GLN GLU GLY TYR LEU ASN LYS TYR GLY LEU THR VAL SEQRES 19 C 304 GLU ARG ALA GLU ARG MET LYS ARG HIS ALA ILE ILE MET SEQRES 20 C 304 HIS PRO ALA PRO VAL ASN ARG GLY VAL GLU ILE ASP ASP SEQRES 21 C 304 SER LEU VAL GLU SER GLU LYS SER ARG ILE PHE LYS GLN SEQRES 22 C 304 MET LYS ASN GLY VAL PHE ILE ARG MET ALA VAL ILE GLN SEQRES 23 C 304 ARG ALA LEU GLN THR ASN VAL LYS ARG GLY GLU ALA ALA SEQRES 24 C 304 TYR VAL ILE SER HIS HET PO4 A 305 5 HET PO4 A 306 5 HET PO4 A 307 5 HET PO4 B 305 5 HET PO4 C 305 5 HET PO4 C 306 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 6(O4 P 3-) FORMUL 10 HOH *583(H2 O) HELIX 1 1 THR A 6 LEU A 10 5 5 HELIX 2 2 SER A 11 GLY A 28 1 18 HELIX 3 3 SER A 47 LEU A 61 1 15 HELIX 4 4 SER A 72 LYS A 77 1 6 HELIX 5 5 THR A 80 ILE A 91 1 12 HELIX 6 6 TYR A 105 VAL A 113 1 9 HELIX 7 7 HIS A 127 ASN A 143 1 17 HELIX 8 8 ASP A 155 HIS A 158 5 4 HELIX 9 9 SER A 159 LEU A 172 1 14 HELIX 10 10 PRO A 181 GLN A 185 5 5 HELIX 11 11 SER A 196 SER A 204 1 9 HELIX 12 12 SER A 219 GLY A 225 1 7 HELIX 13 13 GLY A 225 GLY A 231 1 7 HELIX 14 14 THR A 233 GLU A 238 1 6 HELIX 15 15 ASP A 259 VAL A 263 5 5 HELIX 16 16 ARG A 269 GLN A 290 1 22 HELIX 17 17 THR B 6 LEU B 10 5 5 HELIX 18 18 SER B 11 SER B 27 1 17 HELIX 19 19 SER B 47 LEU B 61 1 15 HELIX 20 20 SER B 72 LYS B 77 1 6 HELIX 21 21 THR B 80 GLY B 92 1 13 HELIX 22 22 TYR B 105 VAL B 113 1 9 HELIX 23 23 HIS B 127 ASN B 143 1 17 HELIX 24 24 ASP B 155 HIS B 158 5 4 HELIX 25 25 SER B 159 LEU B 172 1 14 HELIX 26 26 PRO B 181 GLN B 185 5 5 HELIX 27 27 SER B 196 SER B 204 1 9 HELIX 28 28 GLY B 225 GLY B 231 1 7 HELIX 29 29 THR B 233 GLU B 238 1 6 HELIX 30 30 ASP B 259 VAL B 263 5 5 HELIX 31 31 ARG B 269 GLN B 290 1 22 HELIX 32 32 THR C 6 LEU C 10 5 5 HELIX 33 33 SER C 11 SER C 27 1 17 HELIX 34 34 SER C 47 LEU C 61 1 15 HELIX 35 35 SER C 72 LYS C 77 1 6 HELIX 36 36 THR C 80 GLY C 92 1 13 HELIX 37 37 TYR C 105 VAL C 113 1 9 HELIX 38 38 HIS C 127 ASN C 143 1 17 HELIX 39 39 SER C 159 LEU C 172 1 14 HELIX 40 40 PRO C 181 GLN C 185 5 5 HELIX 41 41 SER C 196 SER C 204 1 9 HELIX 42 42 SER C 222 GLY C 231 1 10 HELIX 43 43 THR C 233 ARG C 239 1 7 HELIX 44 44 ASP C 259 VAL C 263 5 5 HELIX 45 45 ARG C 269 GLN C 290 1 22 SHEET 1 A 4 ASN A 64 ASP A 69 0 SHEET 2 A 4 PHE A 38 PHE A 43 1 N ASN A 41 O LEU A 66 SHEET 3 A 4 VAL A 95 ARG A 99 1 O VAL A 97 N LEU A 42 SHEET 4 A 4 ILE A 117 GLY A 121 1 O ALA A 120 N ILE A 98 SHEET 1 B 5 THR A 193 TYR A 194 0 SHEET 2 B 5 ARG A 175 SER A 179 1 N VAL A 176 O THR A 193 SHEET 3 B 5 THR A 149 HIS A 153 1 N VAL A 150 O ARG A 175 SHEET 4 B 5 VAL A 206 LEU A 209 1 O MET A 208 N SER A 151 SHEET 5 B 5 ILE A 245 MET A 247 1 O MET A 247 N LEU A 209 SHEET 1 C 4 ASN B 64 ASP B 69 0 SHEET 2 C 4 PHE B 38 PHE B 43 1 N ASN B 41 O LEU B 66 SHEET 3 C 4 VAL B 95 ARG B 99 1 O VAL B 97 N LEU B 42 SHEET 4 C 4 ILE B 117 GLY B 121 1 O ALA B 120 N ILE B 98 SHEET 1 D 5 GLY B 192 TYR B 194 0 SHEET 2 D 5 ARG B 175 SER B 179 1 N VAL B 176 O THR B 193 SHEET 3 D 5 THR B 149 HIS B 153 1 N VAL B 150 O ARG B 175 SHEET 4 D 5 VAL B 206 LEU B 209 1 O MET B 208 N SER B 151 SHEET 5 D 5 ILE B 245 MET B 247 1 O ILE B 245 N VAL B 207 SHEET 1 E 4 ASN C 64 ASP C 69 0 SHEET 2 E 4 PHE C 38 PHE C 43 1 N ASN C 41 O LEU C 66 SHEET 3 E 4 VAL C 95 ARG C 99 1 O VAL C 97 N LEU C 42 SHEET 4 E 4 ILE C 117 GLY C 121 1 O ALA C 120 N ILE C 98 SHEET 1 F 5 THR C 193 TYR C 194 0 SHEET 2 F 5 ARG C 175 SER C 179 1 N PHE C 178 O THR C 193 SHEET 3 F 5 THR C 149 HIS C 153 1 N VAL C 150 O ARG C 175 SHEET 4 F 5 VAL C 206 LEU C 209 1 O MET C 208 N SER C 151 SHEET 5 F 5 ILE C 245 MET C 247 1 O ILE C 245 N VAL C 207 CISPEP 1 ALA A 250 PRO A 251 0 -3.61 CISPEP 2 ALA B 250 PRO B 251 0 -1.79 CISPEP 3 ALA C 250 PRO C 251 0 -0.15 SITE 1 AC1 12 ASN A 67 HOH A 319 HOH A 323 HOH A 328 SITE 2 AC1 12 HOH A 334 HOH A 367 HOH A 385 HOH A 388 SITE 3 AC1 12 HOH A 411 ASN B 67 HOH B 313 ASN C 67 SITE 1 AC2 5 SER A 11 THR A 12 ARG A 171 HOH A 312 SITE 2 AC2 5 HOH A 343 SITE 1 AC3 7 THR A 73 SER A 74 LYS A 77 SER C 47 SITE 2 AC3 7 THR C 48 ARG C 49 PRO C 251 SITE 1 AC4 5 SER B 11 THR B 12 ARG B 171 HOH B 372 SITE 2 AC4 5 HOH B 484 SITE 1 AC5 4 LYS C 272 LYS C 275 HOH C 357 HOH C 381 SITE 1 AC6 5 SER C 11 THR C 12 ARG C 171 HOH C 359 SITE 2 AC6 5 HOH C 573 CRYST1 253.470 153.016 51.130 90.00 96.93 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003945 0.000000 0.000479 0.00000 SCALE2 0.000000 0.006535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019702 0.00000 MASTER 383 0 6 45 27 0 12 6 0 0 0 72 END