HEADER HYDROLASE 18-MAR-11 3R5K TITLE A DESIGNED REDOX-CONTROLLED CASPASE-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CASP-7, APOPTOTIC PROTEASE MCH-3, CMH-1, ICE-LIKE APOPTOTIC COMPND 5 PROTEASE 3, ICE-LAP3, CASPASE-7 SUBUNIT P20, CASPASE-7 SUBUNIT P11; COMPND 6 EC: 3.4.22.60; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP7, MCH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS APOPTOSIS, HYDROLASE, PROTEASE, THIOL PROTEASE, ZYMOGEN, CASPASE, KEYWDS 2 CYSTINE ASPARTATE PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR W.A.WITKOWSKI,J.A.HARDY REVDAT 2 28-NOV-12 3R5K 1 JRNL VERSN REVDAT 1 29-JUN-11 3R5K 0 JRNL AUTH W.A.WITKOWSKI,J.A.HARDY JRNL TITL A DESIGNED REDOX-CONTROLLED CASPASE. JRNL REF PROTEIN SCI. V. 20 1421 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21674661 JRNL DOI 10.1002/PRO.673 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 19333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1050 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1403 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.331 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3872 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5203 ; 1.197 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 8.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;35.991 ;24.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 691 ;21.561 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2354 ; 1.055 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3771 ; 2.031 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 2.446 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 4.210 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-11. REMARK 100 THE RCSB ID CODE IS RCSB064516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : 0.9792 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 48.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.69600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1F1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M FORMATE, 100MM CITRATE, 1.25MM REMARK 280 CYSTAMINE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.94000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.97000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.97000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 CYS A 7 REMARK 465 ILE A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ARG A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 PHE A 31 REMARK 465 VAL A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 LEU A 35 REMARK 465 PHE A 36 REMARK 465 SER A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 465 MET A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 ILE A 48 REMARK 465 LYS A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 ARG A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 VAL A 55 REMARK 465 PRO A 56 REMARK 465 ALA A 196A REMARK 465 ASP A 196B REMARK 465 MET A 196C REMARK 465 SER A 196D REMARK 465 GLY A 196E REMARK 465 PRO A 196F REMARK 465 ILE A 196G REMARK 465 ASN A 196H REMARK 465 ASP A 196I REMARK 465 THR A 196J REMARK 465 ASP A 196K REMARK 465 ALA A 196L REMARK 465 ASN A 196M REMARK 465 PRO A 196N REMARK 465 LEU A 304 REMARK 465 GLU A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 MET B 301 REMARK 465 ALA B 302 REMARK 465 ASP B 303 REMARK 465 ASP B 304 REMARK 465 GLN B 305 REMARK 465 GLY B 306 REMARK 465 CYS B 307 REMARK 465 ILE B 308 REMARK 465 GLU B 309 REMARK 465 GLU B 310 REMARK 465 GLN B 311 REMARK 465 GLY B 312 REMARK 465 VAL B 313 REMARK 465 GLU B 314 REMARK 465 ASP B 315 REMARK 465 SER B 316 REMARK 465 ALA B 317 REMARK 465 ASN B 318 REMARK 465 GLU B 319 REMARK 465 ASP B 320 REMARK 465 SER B 321 REMARK 465 VAL B 322 REMARK 465 ASP B 323 REMARK 465 ALA B 324 REMARK 465 LYS B 325 REMARK 465 PRO B 326 REMARK 465 ASP B 327 REMARK 465 ARG B 328 REMARK 465 SER B 329 REMARK 465 SER B 330 REMARK 465 PHE B 331 REMARK 465 VAL B 332 REMARK 465 PRO B 333 REMARK 465 SER B 334 REMARK 465 LEU B 335 REMARK 465 PHE B 336 REMARK 465 SER B 337 REMARK 465 LYS B 338 REMARK 465 LYS B 339 REMARK 465 LYS B 340 REMARK 465 LYS B 341 REMARK 465 ASN B 342 REMARK 465 VAL B 343 REMARK 465 THR B 344 REMARK 465 MET B 345 REMARK 465 ARG B 346 REMARK 465 SER B 347 REMARK 465 ILE B 348 REMARK 465 LYS B 349 REMARK 465 THR B 350 REMARK 465 THR B 351 REMARK 465 ARG B 352 REMARK 465 ASP B 353 REMARK 465 ARG B 354 REMARK 465 VAL B 355 REMARK 465 PRO B 356 REMARK 465 ALA B 496A REMARK 465 ASP B 496B REMARK 465 MET B 496C REMARK 465 SER B 496D REMARK 465 GLY B 496E REMARK 465 PRO B 496F REMARK 465 ILE B 496G REMARK 465 ASN B 496H REMARK 465 ASP B 496I REMARK 465 THR B 496J REMARK 465 ASP B 496K REMARK 465 ALA B 496L REMARK 465 ASN B 496M REMARK 465 HIS B 606 REMARK 465 HIS B 607 REMARK 465 HIS B 608 REMARK 465 HIS B 609 REMARK 465 HIS B 610 REMARK 465 HIS B 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 87 72.65 -101.19 REMARK 500 ASP A 113 63.36 32.24 REMARK 500 ALA A 117 -62.15 76.15 REMARK 500 THR A 132 -46.68 -28.99 REMARK 500 ASN A 148 -13.64 84.49 REMARK 500 CYS A 171 87.50 -162.04 REMARK 500 ALA A 185 142.44 -170.92 REMARK 500 CYS A 186 153.67 -49.16 REMARK 500 LEU A 191 143.93 71.47 REMARK 500 ILE A 195 157.85 168.36 REMARK 500 PHE A 301 41.79 -90.78 REMARK 500 ASN B 448 2.25 89.91 REMARK 500 ALA B 485 119.57 -176.96 REMARK 500 CYS B 486 128.69 -25.49 REMARK 500 TYR B 511 140.79 -30.55 REMARK 500 LYS B 512 -168.99 -72.09 REMARK 500 GLU B 550 -72.78 -54.22 REMARK 500 SER B 602 147.29 -172.23 REMARK 500 LEU B 604 -125.42 22.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 189 GLU A 190 -138.54 REMARK 500 TYR B 451 GLY B 452 148.06 REMARK 500 ASP B 454 GLY B 455 -144.92 REMARK 500 CYS B 510 TYR B 511 -147.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 190 23.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F1J RELATED DB: PDB REMARK 900 RELATED ID: 1I4O RELATED DB: PDB REMARK 900 RELATED ID: 1K86 RELATED DB: PDB REMARK 900 RELATED ID: 1K88 RELATED DB: PDB REMARK 900 RELATED ID: 1GQF RELATED DB: PDB REMARK 900 RELATED ID: 1KMC RELATED DB: PDB REMARK 900 RELATED ID: 1I51 RELATED DB: PDB REMARK 900 RELATED ID: 1SHJ RELATED DB: PDB REMARK 900 RELATED ID: 1SHL RELATED DB: PDB REMARK 900 RELATED ID: 2QL5 RELATED DB: PDB REMARK 900 RELATED ID: 2QL7 RELATED DB: PDB REMARK 900 RELATED ID: 2QL9 RELATED DB: PDB REMARK 900 RELATED ID: 2QLB RELATED DB: PDB REMARK 900 RELATED ID: 2QLF RELATED DB: PDB REMARK 900 RELATED ID: 2QLJ RELATED DB: PDB REMARK 900 RELATED ID: 3EDR RELATED DB: PDB REMARK 900 RELATED ID: 3H1P RELATED DB: PDB REMARK 900 RELATED ID: 3IBC RELATED DB: PDB REMARK 900 RELATED ID: 3IBF RELATED DB: PDB DBREF 3R5K A 1 303 UNP P55210 CASP7_HUMAN 1 303 DBREF 3R5K B 301 603 UNP P55210 CASP7_HUMAN 1 303 SEQADV 3R5K MET A 196C UNP P55210 EXPRESSION TAG SEQADV 3R5K CYS A 210 UNP P55210 ARG 210 ENGINEERED MUTATION SEQADV 3R5K SER A 246 UNP P55210 CYS 246 ENGINEERED MUTATION SEQADV 3R5K LEU A 304 UNP P55210 EXPRESSION TAG SEQADV 3R5K GLU A 305 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS A 306 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS A 307 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS A 308 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS A 309 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS A 310 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS A 311 UNP P55210 EXPRESSION TAG SEQADV 3R5K MET B 496C UNP P55210 EXPRESSION TAG SEQADV 3R5K CYS B 510 UNP P55210 ARG 210 ENGINEERED MUTATION SEQADV 3R5K SER B 546 UNP P55210 CYS 246 ENGINEERED MUTATION SEQADV 3R5K LEU B 604 UNP P55210 EXPRESSION TAG SEQADV 3R5K GLU B 605 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS B 606 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS B 607 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS B 608 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS B 609 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS B 610 UNP P55210 EXPRESSION TAG SEQADV 3R5K HIS B 611 UNP P55210 EXPRESSION TAG SEQRES 1 A 312 MET ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN GLY VAL SEQRES 2 A 312 GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA LYS PRO SEQRES 3 A 312 ASP ARG SER SER PHE VAL PRO SER LEU PHE SER LYS LYS SEQRES 4 A 312 LYS LYS ASN VAL THR MET ARG SER ILE LYS THR THR ARG SEQRES 5 A 312 ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN PHE GLU SEQRES 6 A 312 LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE SEQRES 7 A 312 ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP SEQRES 8 A 312 LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU SEQRES 9 A 312 GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA SEQRES 10 A 312 LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP SEQRES 11 A 312 HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER SEQRES 12 A 312 HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL SEQRES 13 A 312 THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP SEQRES 14 A 312 ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE SEQRES 15 A 312 ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE SEQRES 16 A 312 GLN ALA ASP MET SER GLY PRO ILE ASN ASP THR ASP ALA SEQRES 17 A 312 ASN PRO CYS TYR LYS ILE PRO VAL GLU ALA ASP PHE LEU SEQRES 18 A 312 PHE ALA TYR SER THR VAL PRO GLY TYR TYR SER TRP ARG SEQRES 19 A 312 SER PRO GLY ARG GLY SER TRP PHE VAL GLN ALA LEU SER SEQRES 20 A 312 SER ILE LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE MET SEQRES 21 A 312 GLN ILE LEU THR ARG VAL ASN ASP ARG VAL ALA ARG HIS SEQRES 22 A 312 PHE GLU SER GLN SER ASP ASP PRO HIS PHE HIS GLU LYS SEQRES 23 A 312 LYS GLN ILE PRO CYS VAL VAL SER MET LEU THR LYS GLU SEQRES 24 A 312 LEU TYR PHE SER GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MET ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN GLY VAL SEQRES 2 B 312 GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA LYS PRO SEQRES 3 B 312 ASP ARG SER SER PHE VAL PRO SER LEU PHE SER LYS LYS SEQRES 4 B 312 LYS LYS ASN VAL THR MET ARG SER ILE LYS THR THR ARG SEQRES 5 B 312 ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN PHE GLU SEQRES 6 B 312 LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE SEQRES 7 B 312 ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP SEQRES 8 B 312 LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU SEQRES 9 B 312 GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA SEQRES 10 B 312 LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP SEQRES 11 B 312 HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER SEQRES 12 B 312 HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL SEQRES 13 B 312 THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP SEQRES 14 B 312 ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE SEQRES 15 B 312 ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE SEQRES 16 B 312 GLN ALA ASP MET SER GLY PRO ILE ASN ASP THR ASP ALA SEQRES 17 B 312 ASN PRO CYS TYR LYS ILE PRO VAL GLU ALA ASP PHE LEU SEQRES 18 B 312 PHE ALA TYR SER THR VAL PRO GLY TYR TYR SER TRP ARG SEQRES 19 B 312 SER PRO GLY ARG GLY SER TRP PHE VAL GLN ALA LEU SER SEQRES 20 B 312 SER ILE LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE MET SEQRES 21 B 312 GLN ILE LEU THR ARG VAL ASN ASP ARG VAL ALA ARG HIS SEQRES 22 B 312 PHE GLU SER GLN SER ASP ASP PRO HIS PHE HIS GLU LYS SEQRES 23 B 312 LYS GLN ILE PRO CYS VAL VAL SER MET LEU THR LYS GLU SEQRES 24 B 312 LEU TYR PHE SER GLN LEU GLU HIS HIS HIS HIS HIS HIS HET FMT A 312 3 HET FMT A 313 3 HET FMT B 2 3 HET FMT B 4 3 HET FMT B 5 3 HET FMT B 7 3 HETNAM FMT FORMIC ACID FORMUL 3 FMT 6(C H2 O2) FORMUL 9 HOH *104(H2 O) HELIX 1 1 ASP A 79 GLY A 83 5 5 HELIX 2 2 GLY A 89 GLY A 105 1 17 HELIX 3 3 ALA A 117 GLU A 129 1 13 HELIX 4 4 ILE A 159 ALA A 164 1 6 HELIX 5 5 HIS A 165 LEU A 175 5 11 HELIX 6 6 TRP A 240 GLY A 253 1 14 HELIX 7 7 GLU A 257 HIS A 272 1 16 HELIX 8 8 ASP B 379 GLY B 383 5 5 HELIX 9 9 GLY B 389 LEU B 404 1 16 HELIX 10 10 SER B 415 GLU B 429 1 15 HELIX 11 11 ILE B 459 HIS B 465 1 7 HELIX 12 12 PHE B 466 LEU B 475 5 10 HELIX 13 13 TRP B 540 GLY B 553 1 14 HELIX 14 14 GLU B 557 PHE B 573 1 17 SHEET 1 A12 PHE A 106 ASN A 112 0 SHEET 2 A12 GLY A 68 ASN A 74 1 N ILE A 72 O ILE A 109 SHEET 3 A12 PHE A 137 LEU A 142 1 O ILE A 140 N ILE A 73 SHEET 4 A12 LYS A 179 GLN A 184 1 O LEU A 180 N PHE A 137 SHEET 5 A12 PHE A 219 TYR A 223 1 O LEU A 220 N PHE A 181 SHEET 6 A12 CYS A 290 SER A 293 -1 O VAL A 292 N PHE A 221 SHEET 7 A12 CYS B 590 SER B 593 -1 O SER B 593 N VAL A 291 SHEET 8 A12 PHE B 519 TYR B 523 -1 N PHE B 521 O VAL B 592 SHEET 9 A12 LYS B 479 GLN B 484 1 N PHE B 481 O LEU B 520 SHEET 10 A12 PHE B 437 LEU B 442 1 N PHE B 437 O LEU B 480 SHEET 11 A12 GLY B 368 ASN B 374 1 N ILE B 371 O ILE B 440 SHEET 12 A12 PHE B 406 ASN B 412 1 O ILE B 409 N ILE B 372 SHEET 1 B 3 GLY A 145 GLU A 146 0 SHEET 2 B 3 VAL A 149 TYR A 151 -1 O VAL A 149 N GLU A 146 SHEET 3 B 3 VAL A 156 PRO A 158 -1 O THR A 157 N ILE A 150 SHEET 1 C 2 ARG A 233 SER A 234 0 SHEET 2 C 2 GLY A 238 SER A 239 -1 O GLY A 238 N SER A 234 SHEET 1 D 3 GLY B 445 GLU B 446 0 SHEET 2 D 3 VAL B 449 GLY B 452 -1 O VAL B 449 N GLU B 446 SHEET 3 D 3 GLY B 455 PRO B 458 -1 O THR B 457 N ILE B 450 SHEET 1 E 2 ARG B 533 SER B 534 0 SHEET 2 E 2 GLY B 538 SER B 539 -1 O GLY B 538 N SER B 534 CISPEP 1 PRO B 509 CYS B 510 0 21.05 SITE 1 AC1 5 LYS A 76 GLY A 89 THR A 90 ASP A 91 SITE 2 AC1 5 LYS A 92 SITE 1 AC2 6 ARG A 87 SER A 143 HIS A 144 GLN A 184 SITE 2 AC2 6 ARG A 233 HOH A 366 SITE 1 AC3 5 TYR A 211 LYS A 212 ARG B 571 GLU B 574 SITE 2 AC3 5 LYS B 586 SITE 1 AC4 6 ASP B 492 THR B 525 VAL B 526 TYR B 529 SITE 2 AC4 6 GLN B 587 ILE B 588 SITE 1 AC5 2 LYS B 554 SER B 602 SITE 1 AC6 5 ARG B 387 HIS B 444 GLN B 484 CYS B 486 SITE 2 AC6 5 ARG B 533 CRYST1 89.850 89.850 185.910 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011130 0.006426 0.000000 0.00000 SCALE2 0.000000 0.012852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005379 0.00000 MASTER 516 0 6 14 22 0 11 6 0 0 0 48 END