HEADER OXIDOREDUCTASE 13-FEB-11 3QPI TITLE CRYSTAL STRUCTURE OF DIMERIC CHLORITE DISMUTASES FROM NITROBACTER TITLE 2 WINOGRADSKYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORITE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-183; COMPND 5 EC: 1.13.11.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROBACTER WINOGRADSKYI; SOURCE 3 ORGANISM_TAXID: 323098; SOURCE 4 STRAIN: NB-255 / ATCC 25391; SOURCE 5 GENE: NWI_2442; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21B(+) KEYWDS OXYGEN, OXIDOREDUCTASE, CHLORITE O(2)-LYASE, CYTOPLASMA, CHLORITE EXPDTA X-RAY DIFFRACTION AUTHOR G.MLYNEK,B.SJOEBLOM,J.KOSTAN,S.FUEREDER,F.MAIXNER,P.G.FURTMUELLER, AUTHOR 2 O.OBINGER,M.WAGNER,H.DAIMS,K.DJINOVIC-CARUGO REVDAT 3 25-OCT-17 3QPI 1 REMARK REVDAT 2 29-FEB-12 3QPI 1 JRNL VERSN REVDAT 1 06-JUL-11 3QPI 0 JRNL AUTH G.MLYNEK,B.SJOBLOM,J.KOSTAN,S.FUREDER,F.MAIXNER,K.GYSEL, JRNL AUTH 2 P.G.FURTMULLER,C.OBINGER,M.WAGNER,H.DAIMS,K.DJINOVIC-CARUGO JRNL TITL UNEXPECTED DIVERSITY OF CHLORITE DISMUTASES: A CATALYTICALLY JRNL TITL 2 EFFICIENT DIMERIC ENZYME FROM NITROBACTER WINOGRADSKYI. JRNL REF J.BACTERIOL. V. 193 2408 2011 JRNL REFN ISSN 0021-9193 JRNL PMID 21441524 JRNL DOI 10.1128/JB.01262-10 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 6.840 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9040 - 4.5234 1.00 2962 156 0.1861 0.2293 REMARK 3 2 4.5234 - 3.5908 1.00 2890 158 0.1479 0.1773 REMARK 3 3 3.5908 - 3.1370 1.00 2861 149 0.1659 0.2333 REMARK 3 4 3.1370 - 2.8502 1.00 2857 149 0.1873 0.2541 REMARK 3 5 2.8502 - 2.6460 1.00 2856 148 0.1786 0.2561 REMARK 3 6 2.6460 - 2.4900 1.00 2858 147 0.1930 0.2671 REMARK 3 7 2.4900 - 2.3653 1.00 2833 153 0.2133 0.2385 REMARK 3 8 2.3653 - 2.2623 1.00 2841 148 0.2308 0.2561 REMARK 3 9 2.2623 - 2.1752 1.00 2831 149 0.2799 0.3020 REMARK 3 10 2.1752 - 2.1002 0.99 2830 149 0.3581 0.3711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.650 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01290 REMARK 3 B22 (A**2) : 0.01290 REMARK 3 B33 (A**2) : 1.27940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2900 REMARK 3 ANGLE : 1.337 3968 REMARK 3 CHIRALITY : 0.069 417 REMARK 3 PLANARITY : 0.005 495 REMARK 3 DIHEDRAL : 14.247 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:22) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7862 62.7324 12.3672 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.2249 REMARK 3 T33: 0.0203 T12: 0.0086 REMARK 3 T13: -0.0148 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 0.0175 L22: 0.0264 REMARK 3 L33: 0.2162 L12: 0.0186 REMARK 3 L13: -0.0175 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0236 S13: 0.0136 REMARK 3 S21: -0.0566 S22: -0.0092 S23: -0.0227 REMARK 3 S31: 0.0161 S32: 0.0260 S33: 0.2019 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 23:40) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6796 58.6263 10.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.2301 REMARK 3 T33: 0.5464 T12: -0.0310 REMARK 3 T13: 0.0495 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.5216 L22: 0.7392 REMARK 3 L33: 1.6349 L12: 0.1837 REMARK 3 L13: -0.4178 L23: -0.6340 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.2513 S13: -0.1478 REMARK 3 S21: -0.1859 S22: 0.0866 S23: 0.1675 REMARK 3 S31: 0.3001 S32: -0.1868 S33: 0.0093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 41:59) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9796 52.7529 15.5203 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.2088 REMARK 3 T33: 0.5408 T12: 0.0176 REMARK 3 T13: 0.0351 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5979 L22: 3.6480 REMARK 3 L33: 6.2621 L12: -0.1879 REMARK 3 L13: 0.6187 L23: -4.6852 REMARK 3 S TENSOR REMARK 3 S11: 0.1817 S12: 0.1454 S13: 0.0852 REMARK 3 S21: -0.1658 S22: 0.2748 S23: 0.2951 REMARK 3 S31: 0.1894 S32: -0.2357 S33: -0.3725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 60:109) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7072 52.8144 27.5571 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1913 REMARK 3 T33: 0.5259 T12: -0.0171 REMARK 3 T13: -0.0091 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.0739 L22: 1.2627 REMARK 3 L33: 0.8430 L12: -0.1128 REMARK 3 L13: 0.3348 L23: -0.9861 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.0393 S13: -0.0099 REMARK 3 S21: 0.1036 S22: -0.1728 S23: -0.2119 REMARK 3 S31: -0.0434 S32: 0.0506 S33: 0.1236 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 110:120) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8325 56.1266 31.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.2535 REMARK 3 T33: 0.5715 T12: -0.0739 REMARK 3 T13: -0.0699 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 5.5502 L22: 2.3548 REMARK 3 L33: 2.9796 L12: 1.6360 REMARK 3 L13: -0.5315 L23: 1.0459 REMARK 3 S TENSOR REMARK 3 S11: -0.0828 S12: -0.2729 S13: -0.1425 REMARK 3 S21: 0.0257 S22: -0.1781 S23: -0.1219 REMARK 3 S31: -0.0896 S32: 0.1748 S33: 0.1737 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 121:157) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6216 59.8221 22.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1750 REMARK 3 T33: 0.5195 T12: -0.0124 REMARK 3 T13: -0.0043 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.0999 L22: 1.3642 REMARK 3 L33: 1.0850 L12: 0.1750 REMARK 3 L13: -0.2392 L23: -0.1152 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.0390 S13: 0.0179 REMARK 3 S21: 0.1351 S22: -0.0504 S23: -0.1001 REMARK 3 S31: -0.0448 S32: 0.1141 S33: -0.0213 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 158:182) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6173 58.4313 18.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.2273 REMARK 3 T33: 0.6085 T12: -0.0038 REMARK 3 T13: 0.0388 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.5471 L22: 0.4222 REMARK 3 L33: 0.7479 L12: 0.0990 REMARK 3 L13: 0.4059 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.0472 S13: -0.0708 REMARK 3 S21: 0.0271 S22: -0.1491 S23: -0.1189 REMARK 3 S31: 0.0517 S32: 0.1009 S33: 0.1579 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8579 27.6735 13.2079 REMARK 3 T TENSOR REMARK 3 T11: 0.6223 T22: 0.3300 REMARK 3 T33: 0.4964 T12: -0.0075 REMARK 3 T13: -0.1899 T23: -0.0772 REMARK 3 L TENSOR REMARK 3 L11: 2.4979 L22: 1.6268 REMARK 3 L33: 5.4856 L12: -2.0047 REMARK 3 L13: -0.0711 L23: 0.3700 REMARK 3 S TENSOR REMARK 3 S11: 0.2924 S12: 0.0595 S13: -0.4223 REMARK 3 S21: -0.0110 S22: -0.0771 S23: 0.1778 REMARK 3 S31: 0.4002 S32: -0.3737 S33: -0.1737 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 13:40) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5626 24.6943 19.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.2728 REMARK 3 T33: 0.6273 T12: -0.0472 REMARK 3 T13: -0.0932 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 0.9163 L22: 1.9477 REMARK 3 L33: 1.1320 L12: 0.0937 REMARK 3 L13: -0.6244 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.2489 S13: -0.2372 REMARK 3 S21: -0.5262 S22: -0.0013 S23: 0.3872 REMARK 3 S31: 0.2593 S32: -0.3054 S33: -0.0383 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 41:64) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6541 34.4032 22.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.1764 REMARK 3 T33: 0.6541 T12: -0.0093 REMARK 3 T13: -0.0229 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.4773 L22: 1.7733 REMARK 3 L33: 1.3344 L12: 2.4731 REMARK 3 L13: 0.4545 L23: 0.4550 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.0723 S13: 0.2631 REMARK 3 S21: -0.3367 S22: -0.1625 S23: 0.1963 REMARK 3 S31: 0.0745 S32: -0.1012 S33: 0.2536 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 65:97) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9380 26.1531 25.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.1564 REMARK 3 T33: 0.4129 T12: 0.0479 REMARK 3 T13: -0.0409 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 1.0073 L22: 0.4989 REMARK 3 L33: 0.8513 L12: 0.1117 REMARK 3 L13: -0.1478 L23: -0.6514 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.1904 S13: -0.1683 REMARK 3 S21: -0.3573 S22: -0.1565 S23: -0.0995 REMARK 3 S31: 0.2552 S32: 0.0275 S33: 0.1173 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 98:113) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4562 37.6741 38.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2445 REMARK 3 T33: 0.4058 T12: -0.0077 REMARK 3 T13: -0.0629 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.5043 L22: 2.0113 REMARK 3 L33: 3.7377 L12: -0.4097 REMARK 3 L13: -0.5964 L23: -0.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.1810 S12: -0.1088 S13: 0.0524 REMARK 3 S21: 0.2471 S22: 0.1094 S23: -0.1252 REMARK 3 S31: -0.3031 S32: 0.0527 S33: 0.0480 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 114:151) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4152 26.1274 25.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.1510 REMARK 3 T33: 0.4917 T12: 0.0152 REMARK 3 T13: 0.0013 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.4018 L22: 1.2438 REMARK 3 L33: 1.0780 L12: 0.1315 REMARK 3 L13: -0.0838 L23: 0.3055 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.0163 S13: -0.1861 REMARK 3 S21: -0.3862 S22: -0.0389 S23: -0.0376 REMARK 3 S31: 0.1450 S32: 0.0805 S33: -0.0050 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 152:182) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1056 23.9499 32.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.1887 REMARK 3 T33: 0.0010 T12: 0.0099 REMARK 3 T13: -0.0019 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.1294 L22: 0.8504 REMARK 3 L33: 1.0073 L12: -0.2339 REMARK 3 L13: -0.0719 L23: -0.0968 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.1385 S13: -0.0913 REMARK 3 S21: 0.1487 S22: -0.0353 S23: -0.0130 REMARK 3 S31: 0.1180 S32: 0.0468 S33: -0.1890 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.278 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 53.6 MM NA2HPO4, 846.4 MM NAH2PO4, PH REMARK 280 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.56000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.28000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE CONFIRMED THE BIOLOGICAL UNIT BY PERFORMING REMARK 300 SIZE EXCLUSION COLUMN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 41 REMARK 465 GLY A 42 REMARK 465 ASP A 43 REMARK 465 THR A 44 REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 ILE A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 41 REMARK 465 GLY B 42 REMARK 465 ASP B 43 REMARK 465 THR B 44 REMARK 465 SER B 45 REMARK 465 ALA B 46 REMARK 465 THR B 47 REMARK 465 THR B 48 REMARK 465 ALA B 182 REMARK 465 ILE B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 110 O HOH B 301 2.02 REMARK 500 O HOH A 287 O HOH A 304 2.15 REMARK 500 O HOH A 193 O HOH A 341 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 22 -62.33 -127.04 REMARK 500 SER A 26 -159.96 -85.88 REMARK 500 SER B 11 123.89 94.96 REMARK 500 SER B 18 145.42 -173.42 REMARK 500 VAL B 22 -67.33 -124.61 REMARK 500 SER B 26 -163.44 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HEM B1001 NA 99.5 REMARK 620 3 HEM B1001 NB 100.0 89.9 REMARK 620 4 HEM B1001 NC 92.9 167.6 88.7 REMARK 620 5 HEM B1001 ND 91.5 91.2 168.1 87.6 REMARK 620 6 HOH B 202 O 170.9 82.8 88.8 84.8 79.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HEM A1001 NA 90.4 REMARK 620 3 HEM A1001 NB 94.7 82.4 REMARK 620 4 HEM A1001 NC 100.1 166.4 88.0 REMARK 620 5 HEM A1001 ND 94.0 89.2 167.9 98.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 1001 DBREF 3QPI A 1 183 UNP Q3SPU6 Q3SPU6_NITWN 1 183 DBREF 3QPI B 1 183 UNP Q3SPU6 Q3SPU6_NITWN 1 183 SEQADV 3QPI HIS A 184 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 185 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 186 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 187 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 188 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS A 189 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 184 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 185 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 186 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 187 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 188 UNP Q3SPU6 EXPRESSION TAG SEQADV 3QPI HIS B 189 UNP Q3SPU6 EXPRESSION TAG SEQRES 1 A 189 MET THR PHE THR VAL PHE THR GLY GLY ASP SER GLY ALA SEQRES 2 A 189 TRP SER ILE LEU SER VAL ALA PRO VAL ILE GLY GLU SER SEQRES 3 A 189 LEU MET ALA ALA SER HIS LEU ALA ILE ALA PRO SER LEU SEQRES 4 A 189 SER LEU GLY ASP THR SER ALA THR THR PRO TRP GLN LEU SEQRES 5 A 189 ARG GLY VAL ALA SER HIS ALA ARG TYR VAL GLU ARG ALA SEQRES 6 A 189 GLU LYS ILE ALA LEU THR SER VAL GLN ALA GLY LEU GLY SEQRES 7 A 189 ARG ASN GLU ALA THR ARG ALA ALA LEU ILE PRO ILE ARG SEQRES 8 A 189 LYS SER ALA ALA TRP TRP GLU MET THR GLN ASP GLU ARG SEQRES 9 A 189 ARG ALA ILE PHE GLU ASP LYS SER HIS HIS ILE ALA ALA SEQRES 10 A 189 SER LEU LYS TYR LEU PRO ALA ILE ALA ARG GLN LEU TYR SEQRES 11 A 189 HIS CYS ARG ASP ILE GLY GLU PRO PHE ASP PHE LEU THR SEQRES 12 A 189 TRP PHE GLU TYR ALA PRO GLU HIS ALA THR MET PHE GLU SEQRES 13 A 189 ASP LEU VAL GLY VAL LEU ARG ALA THR GLU GLU TRP THR SEQRES 14 A 189 TYR VAL GLU ARG GLU VAL ASP ILE ARG LEU ALA ARG ALA SEQRES 15 A 189 ILE HIS HIS HIS HIS HIS HIS SEQRES 1 B 189 MET THR PHE THR VAL PHE THR GLY GLY ASP SER GLY ALA SEQRES 2 B 189 TRP SER ILE LEU SER VAL ALA PRO VAL ILE GLY GLU SER SEQRES 3 B 189 LEU MET ALA ALA SER HIS LEU ALA ILE ALA PRO SER LEU SEQRES 4 B 189 SER LEU GLY ASP THR SER ALA THR THR PRO TRP GLN LEU SEQRES 5 B 189 ARG GLY VAL ALA SER HIS ALA ARG TYR VAL GLU ARG ALA SEQRES 6 B 189 GLU LYS ILE ALA LEU THR SER VAL GLN ALA GLY LEU GLY SEQRES 7 B 189 ARG ASN GLU ALA THR ARG ALA ALA LEU ILE PRO ILE ARG SEQRES 8 B 189 LYS SER ALA ALA TRP TRP GLU MET THR GLN ASP GLU ARG SEQRES 9 B 189 ARG ALA ILE PHE GLU ASP LYS SER HIS HIS ILE ALA ALA SEQRES 10 B 189 SER LEU LYS TYR LEU PRO ALA ILE ALA ARG GLN LEU TYR SEQRES 11 B 189 HIS CYS ARG ASP ILE GLY GLU PRO PHE ASP PHE LEU THR SEQRES 12 B 189 TRP PHE GLU TYR ALA PRO GLU HIS ALA THR MET PHE GLU SEQRES 13 B 189 ASP LEU VAL GLY VAL LEU ARG ALA THR GLU GLU TRP THR SEQRES 14 B 189 TYR VAL GLU ARG GLU VAL ASP ILE ARG LEU ALA ARG ALA SEQRES 15 B 189 ILE HIS HIS HIS HIS HIS HIS HET HEM A1001 43 HET HEM B1001 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *282(H2 O) HELIX 1 1 GLU A 63 GLN A 74 1 12 HELIX 2 2 SER A 93 MET A 99 1 7 HELIX 3 3 THR A 100 GLU A 109 1 10 HELIX 4 4 SER A 118 LEU A 122 5 5 HELIX 5 5 ARG A 133 GLY A 136 5 4 HELIX 6 6 ALA A 148 GLU A 150 5 3 HELIX 7 7 HIS A 151 ALA A 164 1 14 HELIX 8 8 THR A 165 THR A 169 5 5 HELIX 9 9 GLU B 63 GLN B 74 1 12 HELIX 10 10 SER B 93 MET B 99 1 7 HELIX 11 11 THR B 100 GLU B 109 1 10 HELIX 12 12 ILE B 115 LEU B 122 5 8 HELIX 13 13 ALA B 148 GLU B 150 5 3 HELIX 14 14 HIS B 151 ALA B 164 1 14 HELIX 15 15 THR B 165 THR B 169 5 5 SHEET 1 A 8 TRP A 50 GLY A 54 0 SHEET 2 A 8 THR A 4 GLY A 9 -1 N PHE A 6 O LEU A 52 SHEET 3 A 8 HIS A 32 PRO A 37 -1 O ALA A 36 N VAL A 5 SHEET 4 A 8 TRP A 14 ILE A 23 -1 N TRP A 14 O LEU A 33 SHEET 5 A 8 VAL A 171 ARG A 181 -1 O ARG A 178 N SER A 18 SHEET 6 A 8 ARG A 84 LYS A 92 -1 N ALA A 85 O LEU A 179 SHEET 7 A 8 PHE A 141 TYR A 147 -1 O THR A 143 N ILE A 88 SHEET 8 A 8 ALA A 126 HIS A 131 -1 N ALA A 126 O GLU A 146 SHEET 1 B 8 TRP B 50 GLY B 54 0 SHEET 2 B 8 THR B 4 GLY B 9 -1 N THR B 4 O GLY B 54 SHEET 3 B 8 HIS B 32 PRO B 37 -1 O HIS B 32 N GLY B 9 SHEET 4 B 8 TRP B 14 ILE B 23 -1 N TRP B 14 O LEU B 33 SHEET 5 B 8 VAL B 171 ALA B 180 -1 O ALA B 180 N SER B 15 SHEET 6 B 8 ARG B 84 LYS B 92 -1 N ALA B 85 O LEU B 179 SHEET 7 B 8 PHE B 141 TYR B 147 -1 O TYR B 147 N ARG B 84 SHEET 8 B 8 ALA B 126 HIS B 131 -1 N ALA B 126 O GLU B 146 LINK NE2 HIS B 114 FE HEM B1001 1555 1555 2.09 LINK NE2 HIS A 114 FE HEM A1001 1555 1555 2.19 LINK FE HEM B1001 O HOH B 202 1555 1555 2.27 CISPEP 1 LEU A 122 PRO A 123 0 6.55 CISPEP 2 LEU B 122 PRO B 123 0 3.13 SITE 1 AC1 21 ARG A 60 TYR A 61 VAL A 62 LEU A 70 SITE 2 AC1 21 LYS A 92 PHE A 108 HIS A 114 ILE A 115 SITE 3 AC1 21 SER A 118 ARG A 127 PHE A 141 THR A 143 SITE 4 AC1 21 PHE A 145 LEU A 158 LEU A 162 TRP A 168 SITE 5 AC1 21 HOH A 200 HOH A 258 HOH A 286 HOH A 306 SITE 6 AC1 21 HOH A 307 SITE 1 AC2 23 ALA B 59 ARG B 60 TYR B 61 VAL B 62 SITE 2 AC2 23 LYS B 92 TRP B 96 PHE B 108 HIS B 114 SITE 3 AC2 23 ILE B 115 SER B 118 ARG B 127 PHE B 141 SITE 4 AC2 23 THR B 143 PHE B 145 LEU B 158 LEU B 162 SITE 5 AC2 23 TRP B 168 HOH B 202 HOH B 204 HOH B 218 SITE 6 AC2 23 HOH B 285 HOH B 287 HOH B 292 CRYST1 102.620 102.620 49.120 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020358 0.00000 MASTER 530 0 2 15 16 0 12 6 0 0 0 30 END