HEADER TRANSCRIPTION/STRUCTURAL PROTEIN 02-FEB-11 3QLC TITLE COMPLEX STRUCTURE OF ATRX ADD DOMAIN BOUND TO UNMODIFIED H3 1-15 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ATRX; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL ADD DOMAIN, UNP RESIDUES 167-289; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE ATRX, X-LINKED HELICASE II, X-LINKED COMPND 6 NUCLEAR PROTEIN, XNP, ZNF-HX; COMPND 7 EC: 3.6.4.12; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEPTIDE OF HISTONE H3.3; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: N-TERMINAL TAIL, UNP RESIDUES 2-16; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATRX, RAD54L, XH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS ZINC FINGER, ATP-DEPENDENT CHROMATIN REMODELLER, CHROMATIN BINDING, KEYWDS 2 LYSINE METHYLATION, NUCLEAR PROTEIN, HISTONE-BINDING PROTEIN, KEYWDS 3 TRANSCRIPTION-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,D.J.PATEL REVDAT 2 05-MAR-14 3QLC 1 JRNL VERSN REVDAT 1 15-JUN-11 3QLC 0 JRNL AUTH S.IWASE,B.XIANG,S.GHOSH,T.REN,P.W.LEWIS,J.C.COCHRANE, JRNL AUTH 2 C.D.ALLIS,D.J.PICKETTS,D.J.PATEL,H.LI,Y.SHI JRNL TITL ATRX ADD DOMAIN LINKS AN ATYPICAL HISTONE METHYLATION JRNL TITL 2 RECOGNITION MECHANISM TO HUMAN MENTAL-RETARDATION SYNDROME JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 769 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21666679 JRNL DOI 10.1038/NSMB.2062 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0582 - 5.3819 0.99 1771 165 0.1689 0.1995 REMARK 3 2 5.3819 - 4.2736 1.00 1708 148 0.1508 0.1923 REMARK 3 3 4.2736 - 3.7339 1.00 1711 137 0.1600 0.2129 REMARK 3 4 3.7339 - 3.3928 1.00 1682 145 0.1859 0.2051 REMARK 3 5 3.3928 - 3.1497 1.00 1680 135 0.2102 0.2818 REMARK 3 6 3.1497 - 2.9641 0.99 1682 112 0.2323 0.3484 REMARK 3 7 2.9641 - 2.8157 0.99 1652 145 0.2492 0.2860 REMARK 3 8 2.8157 - 2.6932 1.00 1624 149 0.2498 0.3187 REMARK 3 9 2.6932 - 2.5895 1.00 1650 142 0.2951 0.3421 REMARK 3 10 2.5895 - 2.5002 1.00 1667 159 0.3136 0.3611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 31.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.87790 REMARK 3 B22 (A**2) : 1.87790 REMARK 3 B33 (A**2) : -3.75570 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2156 REMARK 3 ANGLE : 1.206 2906 REMARK 3 CHIRALITY : 0.080 310 REMARK 3 PLANARITY : 0.005 380 REMARK 3 DIHEDRAL : 17.078 798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3QLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.1M HEPES-NAOH, 0.2M REMARK 280 KCL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.78200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.39100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.39100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.78200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 288 REMARK 465 GLN A 289 REMARK 465 GLU B 288 REMARK 465 GLN B 289 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 165 162.28 70.37 REMARK 500 MET A 166 51.00 39.35 REMARK 500 ASP A 217 153.57 -43.32 REMARK 500 ASN A 286 24.56 -78.16 REMARK 500 SER B 165 159.95 74.35 REMARK 500 MET B 166 42.12 37.91 REMARK 500 HIS B 180 12.17 -69.09 REMARK 500 ASN B 286 44.05 -92.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 663 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 232 SG REMARK 620 2 CYS A 268 SG 120.5 REMARK 620 3 CYS A 235 SG 109.8 100.4 REMARK 620 4 CYS A 265 SG 105.9 118.8 98.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 661 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 200 SG REMARK 620 2 CYS A 174 SG 110.2 REMARK 620 3 CYS A 197 SG 106.7 119.1 REMARK 620 4 CYS A 171 SG 108.8 111.0 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 663 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 235 SG REMARK 620 2 CYS B 268 SG 112.3 REMARK 620 3 CYS B 232 SG 112.2 112.4 REMARK 620 4 CYS B 265 SG 98.1 118.4 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 661 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 197 SG REMARK 620 2 CYS B 200 SG 103.8 REMARK 620 3 CYS B 171 SG 114.1 108.8 REMARK 620 4 CYS B 174 SG 121.5 104.6 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 662 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 240 SG REMARK 620 2 CYS A 243 SG 109.2 REMARK 620 3 CYS A 220 SG 115.9 111.4 REMARK 620 4 CYS A 223 SG 113.7 104.6 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 662 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 243 SG REMARK 620 2 CYS B 223 SG 107.3 REMARK 620 3 CYS B 240 SG 105.8 118.6 REMARK 620 4 CYS B 220 SG 112.4 107.8 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 661 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 662 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 663 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 661 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 662 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 663 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QL9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO HISTONE H3K9ME3 PEPTIDE - REMARK 900 MONOCLINIC FORM REMARK 900 RELATED ID: 3QLA RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO HISTONE H3K9ME3 PEPTIDE - REMARK 900 HEXAGONAL FORM REMARK 900 RELATED ID: 3QLN RELATED DB: PDB REMARK 900 ATRX ADD DOMAIN IN FREE STATE DBREF 3QLC A 167 289 UNP P46100 ATRX_HUMAN 167 289 DBREF 3QLC B 167 289 UNP P46100 ATRX_HUMAN 167 289 DBREF 3QLC C 1 15 UNP P84243 H33_HUMAN 2 16 DBREF 3QLC D 1 15 UNP P84243 H33_HUMAN 2 16 SEQADV 3QLC GLY A 161 UNP P46100 EXPRESSION TAG SEQADV 3QLC PRO A 162 UNP P46100 EXPRESSION TAG SEQADV 3QLC LEU A 163 UNP P46100 EXPRESSION TAG SEQADV 3QLC GLY A 164 UNP P46100 EXPRESSION TAG SEQADV 3QLC SER A 165 UNP P46100 EXPRESSION TAG SEQADV 3QLC MET A 166 UNP P46100 EXPRESSION TAG SEQADV 3QLC ARG A 251 UNP P46100 LYS 251 ENGINEERED MUTATION SEQADV 3QLC TYR A 284 UNP P46100 PHE 284 ENGINEERED MUTATION SEQADV 3QLC GLY B 161 UNP P46100 EXPRESSION TAG SEQADV 3QLC PRO B 162 UNP P46100 EXPRESSION TAG SEQADV 3QLC LEU B 163 UNP P46100 EXPRESSION TAG SEQADV 3QLC GLY B 164 UNP P46100 EXPRESSION TAG SEQADV 3QLC SER B 165 UNP P46100 EXPRESSION TAG SEQADV 3QLC MET B 166 UNP P46100 EXPRESSION TAG SEQADV 3QLC ARG B 251 UNP P46100 LYS 251 ENGINEERED MUTATION SEQADV 3QLC TYR B 284 UNP P46100 PHE 284 ENGINEERED MUTATION SEQRES 1 A 129 GLY PRO LEU GLY SER MET GLY ILE VAL SER CYS THR ALA SEQRES 2 A 129 CYS GLY GLN GLN VAL ASN HIS PHE GLN LYS ASP SER ILE SEQRES 3 A 129 TYR ARG HIS PRO SER LEU GLN VAL LEU ILE CYS LYS ASN SEQRES 4 A 129 CYS PHE LYS TYR TYR MET SER ASP ASP ILE SER ARG ASP SEQRES 5 A 129 SER ASP GLY MET ASP GLU GLN CYS ARG TRP CYS ALA GLU SEQRES 6 A 129 GLY GLY ASN LEU ILE CYS CYS ASP PHE CYS HIS ASN ALA SEQRES 7 A 129 PHE CYS LYS LYS CYS ILE LEU ARG ASN LEU GLY ARG ARG SEQRES 8 A 129 GLU LEU SER THR ILE MET ASP GLU ASN ASN GLN TRP TYR SEQRES 9 A 129 CYS TYR ILE CYS HIS PRO GLU PRO LEU LEU ASP LEU VAL SEQRES 10 A 129 THR ALA CYS ASN SER VAL TYR GLU ASN LEU GLU GLN SEQRES 1 B 129 GLY PRO LEU GLY SER MET GLY ILE VAL SER CYS THR ALA SEQRES 2 B 129 CYS GLY GLN GLN VAL ASN HIS PHE GLN LYS ASP SER ILE SEQRES 3 B 129 TYR ARG HIS PRO SER LEU GLN VAL LEU ILE CYS LYS ASN SEQRES 4 B 129 CYS PHE LYS TYR TYR MET SER ASP ASP ILE SER ARG ASP SEQRES 5 B 129 SER ASP GLY MET ASP GLU GLN CYS ARG TRP CYS ALA GLU SEQRES 6 B 129 GLY GLY ASN LEU ILE CYS CYS ASP PHE CYS HIS ASN ALA SEQRES 7 B 129 PHE CYS LYS LYS CYS ILE LEU ARG ASN LEU GLY ARG ARG SEQRES 8 B 129 GLU LEU SER THR ILE MET ASP GLU ASN ASN GLN TRP TYR SEQRES 9 B 129 CYS TYR ILE CYS HIS PRO GLU PRO LEU LEU ASP LEU VAL SEQRES 10 B 129 THR ALA CYS ASN SER VAL TYR GLU ASN LEU GLU GLN SEQRES 1 C 15 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 C 15 LYS ALA SEQRES 1 D 15 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 15 LYS ALA HET ZN A 661 1 HET ZN A 662 1 HET ZN A 663 1 HET ZN B 661 1 HET ZN B 662 1 HET ZN B 663 1 HETNAM ZN ZINC ION FORMUL 5 ZN 6(ZN 2+) FORMUL 11 HOH *114(H2 O) HELIX 1 1 LYS A 198 SER A 206 1 9 HELIX 2 2 LYS A 241 ASP A 258 1 18 HELIX 3 3 PRO A 270 PRO A 272 5 3 HELIX 4 4 LEU A 273 ASN A 286 1 14 HELIX 5 5 GLN B 182 ILE B 186 5 5 HELIX 6 6 CYS B 197 ASP B 207 1 11 HELIX 7 7 LYS B 241 GLY B 249 1 9 HELIX 8 8 GLY B 249 ILE B 256 1 8 HELIX 9 9 PRO B 270 PRO B 272 5 3 HELIX 10 10 LEU B 273 ASN B 286 1 14 SHEET 1 B 3 ARG C 2 GLN C 5 0 SHEET 1 D 3 THR D 3 GLN D 5 0 LINK SG CYS A 232 ZN ZN A 663 1555 1555 2.21 LINK SG CYS A 200 ZN ZN A 661 1555 1555 2.22 LINK SG CYS B 235 ZN ZN B 663 1555 1555 2.22 LINK SG CYS B 197 ZN ZN B 661 1555 1555 2.23 LINK SG CYS B 200 ZN ZN B 661 1555 1555 2.27 LINK SG CYS A 240 ZN ZN A 662 1555 1555 2.28 LINK SG CYS A 243 ZN ZN A 662 1555 1555 2.28 LINK SG CYS B 243 ZN ZN B 662 1555 1555 2.29 LINK SG CYS A 174 ZN ZN A 661 1555 1555 2.31 LINK SG CYS B 223 ZN ZN B 662 1555 1555 2.33 LINK SG CYS A 268 ZN ZN A 663 1555 1555 2.35 LINK SG CYS B 240 ZN ZN B 662 1555 1555 2.36 LINK SG CYS A 197 ZN ZN A 661 1555 1555 2.38 LINK SG CYS B 268 ZN ZN B 663 1555 1555 2.38 LINK SG CYS B 171 ZN ZN B 661 1555 1555 2.38 LINK SG CYS B 232 ZN ZN B 663 1555 1555 2.38 LINK SG CYS B 265 ZN ZN B 663 1555 1555 2.38 LINK SG CYS B 174 ZN ZN B 661 1555 1555 2.40 LINK SG CYS A 171 ZN ZN A 661 1555 1555 2.42 LINK SG CYS A 220 ZN ZN A 662 1555 1555 2.43 LINK SG CYS B 220 ZN ZN B 662 1555 1555 2.46 LINK SG CYS A 235 ZN ZN A 663 1555 1555 2.47 LINK SG CYS A 265 ZN ZN A 663 1555 1555 2.50 LINK SG CYS A 223 ZN ZN A 662 1555 1555 2.52 CISPEP 1 GLY A 161 PRO A 162 0 -4.05 CISPEP 2 GLY B 161 PRO B 162 0 -6.23 SITE 1 AC1 4 CYS A 171 CYS A 174 CYS A 197 CYS A 200 SITE 1 AC2 4 CYS A 220 CYS A 223 CYS A 240 CYS A 243 SITE 1 AC3 4 CYS A 232 CYS A 235 CYS A 265 CYS A 268 SITE 1 AC4 4 CYS B 171 CYS B 174 CYS B 197 CYS B 200 SITE 1 AC5 4 CYS B 220 CYS B 223 CYS B 240 CYS B 243 SITE 1 AC6 4 CYS B 232 CYS B 235 CYS B 265 CYS B 268 CRYST1 80.607 80.607 136.173 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012406 0.007163 0.000000 0.00000 SCALE2 0.000000 0.014325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007344 0.00000 MASTER 367 0 6 10 2 0 6 6 0 0 0 24 END