HEADER REPLICATION 01-FEB-11 3QKR TITLE MRE11 RAD50 BINDING DOMAIN BOUND TO RAD50 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-195); COMPND 5 SYNONYM: RAD50 ABC-ATPASE; COMPND 6 EC: 3.6.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 704-882); COMPND 12 SYNONYM: RAD50 ABC-ATPASE; COMPND 13 EC: 3.6.-.-; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11; COMPND 17 CHAIN: C; COMPND 18 FRAGMENT: RAD50 BINDING DOMAIN (UNP RESIDUES 348-381); COMPND 19 SYNONYM: MRE11 NUCLEASE, PFMRE11; COMPND 20 EC: 3.1.-.-; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: RAD50, PF1167; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 9 ORGANISM_TAXID: 2261; SOURCE 10 GENE: RAD50, PF1167; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 15 ORGANISM_TAXID: 2261; SOURCE 16 GENE: MRE11, PF1166; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECA-LIKE FOLD, COILED-COILS, ATPASE, EXONUCLEASE, ENDONUCLEASE, ATP KEYWDS 2 BINDING, DNA BINDING, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR G.J.WILLIAMS,R.S.WILLIAMS,A.ARVAI,G.MONCALIAN,J.A.TAINER REVDAT 3 20-APR-11 3QKR 1 JRNL REVDAT 2 13-APR-11 3QKR 1 JRNL REVDAT 1 30-MAR-11 3QKR 0 JRNL AUTH G.J.WILLIAMS,R.S.WILLIAMS,J.S.WILLIAMS,G.MONCALIAN, JRNL AUTH 2 A.S.ARVAI,O.LIMBO,G.GUENTHER,S.SILDAS,M.HAMMEL,P.RUSSELL, JRNL AUTH 3 J.A.TAINER JRNL TITL ABC ATPASE SIGNATURE HELICES IN RAD50 LINK NUCLEOTIDE STATE JRNL TITL 2 TO MRE11 INTERFACE FOR DNA REPAIR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 423 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21441914 JRNL DOI 10.1038/NSMB.2038 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 10142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 457 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.563 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.375 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3412 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4577 ; 1.031 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.343 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;40.306 ;23.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;20.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2476 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1729 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2339 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2100 ;19.848 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3302 ;26.937 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1449 ;40.055 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1275 ;50.888 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QKR COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97591 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHOROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10679 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1II8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 200-300 MM LITHIUM REMARK 280 SULFATE, 12-13% PEG3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.61767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.23533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.92650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.54417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.30883 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 GLY C 380 REMARK 465 LYS C 381 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 365 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 40 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -124.28 50.34 REMARK 500 ILE A 28 76.88 -105.67 REMARK 500 LYS A 54 -123.48 49.57 REMARK 500 PRO A 114 88.06 -62.38 REMARK 500 ARG B 741 -71.03 -50.70 REMARK 500 SER B 765 -51.61 72.05 REMARK 500 ASN B 774 -1.88 73.04 REMARK 500 GLU B 823 -61.20 -106.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 2 DISTANCE = 5.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QKS RELATED DB: PDB REMARK 900 RELATED ID: 3QKT RELATED DB: PDB REMARK 900 RELATED ID: 3QKU RELATED DB: PDB DBREF 3QKR A 1 195 UNP P58301 RAD50_PYRFU 1 195 DBREF 3QKR B 704 882 UNP P58301 RAD50_PYRFU 704 882 DBREF 3QKR C 348 381 UNP Q8U1N9 MRE11_PYRFU 348 381 SEQADV 3QKR GLY A 196 UNP P58301 EXPRESSION TAG SEQADV 3QKR GLY A 197 UNP P58301 EXPRESSION TAG SEQADV 3QKR HIS A 198 UNP P58301 EXPRESSION TAG SEQADV 3QKR HIS A 199 UNP P58301 EXPRESSION TAG SEQADV 3QKR HIS A 200 UNP P58301 EXPRESSION TAG SEQADV 3QKR HIS A 201 UNP P58301 EXPRESSION TAG SEQADV 3QKR HIS A 202 UNP P58301 EXPRESSION TAG SEQADV 3QKR HIS A 203 UNP P58301 EXPRESSION TAG SEQRES 1 A 203 MET LYS LEU GLU ARG VAL THR VAL LYS ASN PHE ARG SER SEQRES 2 A 203 HIS SER ASP THR VAL VAL GLU PHE LYS GLU GLY ILE ASN SEQRES 3 A 203 LEU ILE ILE GLY GLN ASN GLY SER GLY LYS SER SER LEU SEQRES 4 A 203 LEU ASP ALA ILE LEU VAL GLY LEU TYR TRP PRO LEU ARG SEQRES 5 A 203 ILE LYS ASP ILE LYS LYS ASP GLU PHE THR LYS VAL GLY SEQRES 6 A 203 ALA ARG ASP THR TYR ILE ASP LEU ILE PHE GLU LYS ASP SEQRES 7 A 203 GLY THR LYS TYR ARG ILE THR ARG ARG PHE LEU LYS GLY SEQRES 8 A 203 TYR SER SER GLY GLU ILE HIS ALA MET LYS ARG LEU VAL SEQRES 9 A 203 GLY ASN GLU TRP LYS HIS VAL THR GLU PRO SER SER LYS SEQRES 10 A 203 ALA ILE SER ALA PHE MET GLU LYS LEU ILE PRO TYR ASN SEQRES 11 A 203 ILE PHE LEU ASN ALA ILE TYR ILE ARG GLN GLY GLN ILE SEQRES 12 A 203 ASP ALA ILE LEU GLU SER ASP GLU ALA ARG GLU LYS VAL SEQRES 13 A 203 VAL ARG GLU VAL LEU ASN LEU ASP LYS PHE GLU THR ALA SEQRES 14 A 203 TYR LYS LYS LEU SER GLU LEU LYS LYS THR ILE ASN ASN SEQRES 15 A 203 ARG ILE LYS GLU TYR ARG ASP ILE LEU ALA ARG THR GLU SEQRES 16 A 203 GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 179 ALA GLU LYS GLU ASN ARG GLU ARG VAL LYS LYS GLU ILE SEQRES 2 B 179 LYS ASP LEU GLU LYS ALA LYS ASP PHE THR GLU GLU LEU SEQRES 3 B 179 ILE GLU LYS VAL LYS LYS TYR LYS ALA LEU ALA ARG GLU SEQRES 4 B 179 ALA ALA LEU SER LYS ILE GLY GLU LEU ALA SER GLU ILE SEQRES 5 B 179 PHE ALA GLU PHE THR GLU GLY LYS TYR SER GLU VAL VAL SEQRES 6 B 179 VAL ARG ALA GLU GLU ASN LYS VAL ARG LEU PHE VAL VAL SEQRES 7 B 179 TRP GLU GLY LYS GLU ARG PRO LEU THR PHE LEU SER GLY SEQRES 8 B 179 GLY GLU ARG ILE ALA LEU GLY LEU ALA PHE ARG LEU ALA SEQRES 9 B 179 MET SER LEU TYR LEU ALA GLY GLU ILE SER LEU LEU ILE SEQRES 10 B 179 LEU ASP GLU PRO THR PRO TYR LEU ASP GLU GLU ARG ARG SEQRES 11 B 179 ARG LYS LEU ILE THR ILE MET GLU ARG TYR LEU LYS LYS SEQRES 12 B 179 ILE PRO GLN VAL ILE LEU VAL SER HIS ASP GLU GLU LEU SEQRES 13 B 179 LYS ASP ALA ALA ASP HIS VAL ILE ARG ILE SER LEU GLU SEQRES 14 B 179 ASN GLY SER SER LYS VAL GLU VAL VAL SER SEQRES 1 C 34 SER ASP PHE PHE THR GLU PHE GLU LEU LYS ILE ILE ASP SEQRES 2 C 34 ILE LEU GLY GLU LYS ASP PHE ASP ASP PHE ASP TYR ILE SEQRES 3 C 34 ILE LYS LEU ILE THR GLU GLY LYS HET PO4 A 200 5 HET PO4 A 201 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *7(H2 O) HELIX 1 1 GLY A 35 TRP A 49 1 15 HELIX 2 2 ASP A 59 VAL A 64 1 6 HELIX 3 3 SER A 115 ILE A 127 1 13 HELIX 4 4 PRO A 128 ILE A 136 1 9 HELIX 5 5 GLY A 141 SER A 149 1 9 HELIX 6 6 GLU A 151 LEU A 161 1 11 HELIX 7 7 LEU A 163 GLU A 195 1 33 HELIX 8 8 GLU B 705 THR B 760 1 56 HELIX 9 9 THR B 790 LEU B 792 5 3 HELIX 10 10 SER B 793 GLY B 814 1 22 HELIX 11 11 ASP B 829 LYS B 845 1 17 HELIX 12 12 ASP B 856 ALA B 862 5 7 HELIX 13 13 THR C 352 GLY C 363 1 12 HELIX 14 14 PHE C 370 GLU C 379 1 10 SHEET 1 A 6 HIS A 14 GLU A 20 0 SHEET 2 A 6 LYS A 2 PHE A 11 -1 N VAL A 8 O THR A 17 SHEET 3 A 6 THR A 69 GLU A 76 -1 O GLU A 76 N LYS A 2 SHEET 4 A 6 LYS A 81 PHE A 88 -1 O PHE A 88 N THR A 69 SHEET 5 A 6 ILE A 97 VAL A 104 -1 O ALA A 99 N THR A 85 SHEET 6 A 6 GLU A 107 HIS A 110 -1 O LYS A 109 N ARG A 102 SHEET 1 B 6 TYR A 137 ILE A 138 0 SHEET 2 B 6 LEU B 818 LEU B 821 1 O ILE B 820 N ILE A 138 SHEET 3 B 6 GLN B 849 SER B 854 1 O ILE B 851 N LEU B 819 SHEET 4 B 6 GLY A 24 ILE A 29 1 N ILE A 28 O LEU B 852 SHEET 5 B 6 HIS B 865 GLU B 872 1 O HIS B 865 N LEU A 27 SHEET 6 B 6 SER B 875 VAL B 880 -1 O GLU B 879 N ARG B 868 SHEET 1 C 3 VAL B 767 GLU B 772 0 SHEET 2 C 3 LYS B 775 VAL B 781 -1 O PHE B 779 N VAL B 768 SHEET 3 C 3 GLU B 786 PRO B 788 -1 O ARG B 787 N VAL B 780 CISPEP 1 TRP A 49 PRO A 50 0 6.69 CISPEP 2 GLY A 196 GLY A 197 0 1.16 CISPEP 3 GLU B 823 PRO B 824 0 -12.41 SITE 1 AC1 5 GLY A 33 SER A 34 GLY A 35 LYS A 36 SITE 2 AC1 5 SER A 37 SITE 1 AC2 1 ARG A 83 CRYST1 116.041 116.041 109.853 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008618 0.004975 0.000000 0.00000 SCALE2 0.000000 0.009951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009103 0.00000 MASTER 334 0 2 14 15 0 3 6 0 0 0 33 END