HEADER TRANSCRIPTION REGULATOR 13-JAN-11 3QBM TITLE CRYSTAL STRUCTURE OF A TETR TRANSCRIPTIONAL REGULATOR (CAUR_2221) FROM TITLE 2 CHLOROFLEXUS AURANTIACUS J-10-FL AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN TETR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 324602; SOURCE 4 STRAIN: J-10-FL; SOURCE 5 GENE: CAUR_2221; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DNA/RNA-BINDING THREE-HELICAL BUNDLE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, TRANSCRIPTION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 2 20-JUL-11 3QBM 1 KEYWDS REVDAT 1 02-FEB-11 3QBM 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A TETR TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (CAUR_2221) FROM CHLOROFLEXUS AURANTIACUS J-10-FL AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 34661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.424 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3309 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2296 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4491 ; 1.465 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5568 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 3.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;32.466 ;22.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;12.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3696 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2033 ; 1.795 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 828 ; 0.552 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3290 ; 2.747 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 4.748 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1180 ; 7.122 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 198 6 REMARK 3 1 B 1 B 198 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2399 ; 0.580 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2399 ; 2.510 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7506 -45.2443 3.1964 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0634 REMARK 3 T33: 0.0160 T12: -0.0482 REMARK 3 T13: 0.0049 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.5387 L22: 1.1649 REMARK 3 L33: 0.2193 L12: 0.3930 REMARK 3 L13: -0.1740 L23: -0.4862 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: -0.0727 S13: 0.0400 REMARK 3 S21: 0.2223 S22: -0.1106 S23: 0.0097 REMARK 3 S31: -0.1085 S32: 0.0748 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 198 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2814 -47.2505 -20.3399 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0302 REMARK 3 T33: 0.0236 T12: -0.0006 REMARK 3 T13: 0.0039 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.4954 L22: 1.1147 REMARK 3 L33: 0.3775 L12: 0.5817 REMARK 3 L13: -0.0707 L23: -0.2788 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0403 S13: 0.0651 REMARK 3 S21: -0.0675 S22: 0.0115 S23: 0.0741 REMARK 3 S31: -0.0286 S32: 0.0188 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.MAGNESIUM (MG) AND POLYETHYLENE GLYCOL FRAGMENTS (PEG AND PGE) REMARK 3 FROM THE CRYSTALLIZATION SOLUTION HAVE BEEN MODELED IN THE REMARK 3 SOLVENT STRUCTURE. REMARK 4 REMARK 4 3QBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB063439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537,0.9796,0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34688 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 27.255 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : 0.53900 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 20.0% PEG-8000, 0.1M TRIS REMARK 280 PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.22450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 40 CD CE NZ REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 197 -85.22 -112.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 336 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH B 417 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 517 DISTANCE = 5.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 241 O REMARK 620 2 ILE A 110 O 89.9 REMARK 620 3 HOH A 238 O 91.0 91.3 REMARK 620 4 HOH A 240 O 93.7 175.0 92.0 REMARK 620 5 ASP A 113 OD1 177.5 87.6 88.4 88.8 REMARK 620 6 HOH B 239 O 97.3 90.0 171.7 86.2 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 113 OD1 REMARK 620 2 ILE B 110 O 86.2 REMARK 620 3 HOH B 311 O 95.6 173.5 REMARK 620 4 HOH B 314 O 93.3 93.2 92.8 REMARK 620 5 HOH A 312 O 81.9 87.9 86.2 174.9 REMARK 620 6 HOH A 313 O 175.8 91.9 85.8 90.6 94.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 399264 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3QBM A 1 198 UNP A9WFT0 A9WFT0_CHLAA 1 198 DBREF 3QBM B 1 198 UNP A9WFT0 A9WFT0_CHLAA 1 198 SEQADV 3QBM GLY A 0 UNP A9WFT0 LEADER SEQUENCE SEQADV 3QBM GLY B 0 UNP A9WFT0 LEADER SEQUENCE SEQRES 1 A 199 GLY MSE ARG LYS GLY GLN GLU THR ARG GLU ARG VAL VAL SEQRES 2 A 199 ALA GLN ALA ALA ALA LEU PHE ASN VAL SER GLY TYR ALA SEQRES 3 A 199 GLY THR ALA ILE SER ASP ILE MSE ALA ALA THR GLY LEU SEQRES 4 A 199 GLU LYS GLY GLY ILE TYR ARG HIS PHE GLU SER LYS GLU SEQRES 5 A 199 GLN LEU ALA LEU ALA ALA PHE ASP TYR ALA ALA GLU LYS SEQRES 6 A 199 VAL ARG GLU ARG PHE ALA VAL GLY LEU ALA GLY HIS LYS SEQRES 7 A 199 HIS THR VAL ASP THR ILE ILE ALA PHE LEU ASP VAL PHE SEQRES 8 A 199 ARG SER TYR ALA GLU ARG PRO PRO LEU VAL GLY GLY CYS SEQRES 9 A 199 PRO ILE LEU ASN THR ALA ILE GLU SER ASP ASP THR ASN SEQRES 10 A 199 PRO MSE LEU ARG GLU ARG VAL ARG ALA VAL ILE ASP GLU SEQRES 11 A 199 TRP ARG GLU THR ILE ARG THR LEU VAL GLN THR GLY ILE SEQRES 12 A 199 ALA ARG GLY GLU ILE ARG PRO GLU VAL ASP ALA ASP ARG SEQRES 13 A 199 LEU ALA LEU LEU ILE ILE ALA THR MSE GLU GLY ALA VAL SEQRES 14 A 199 MSE LEU ALA ARG ILE LEU GLU THR ALA THR PRO LEU GLU SEQRES 15 A 199 HIS ALA TYR THR HIS LEU ALA THR TYR ILE THR GLN GLN SEQRES 16 A 199 VAL ARG LEU ALA SEQRES 1 B 199 GLY MSE ARG LYS GLY GLN GLU THR ARG GLU ARG VAL VAL SEQRES 2 B 199 ALA GLN ALA ALA ALA LEU PHE ASN VAL SER GLY TYR ALA SEQRES 3 B 199 GLY THR ALA ILE SER ASP ILE MSE ALA ALA THR GLY LEU SEQRES 4 B 199 GLU LYS GLY GLY ILE TYR ARG HIS PHE GLU SER LYS GLU SEQRES 5 B 199 GLN LEU ALA LEU ALA ALA PHE ASP TYR ALA ALA GLU LYS SEQRES 6 B 199 VAL ARG GLU ARG PHE ALA VAL GLY LEU ALA GLY HIS LYS SEQRES 7 B 199 HIS THR VAL ASP THR ILE ILE ALA PHE LEU ASP VAL PHE SEQRES 8 B 199 ARG SER TYR ALA GLU ARG PRO PRO LEU VAL GLY GLY CYS SEQRES 9 B 199 PRO ILE LEU ASN THR ALA ILE GLU SER ASP ASP THR ASN SEQRES 10 B 199 PRO MSE LEU ARG GLU ARG VAL ARG ALA VAL ILE ASP GLU SEQRES 11 B 199 TRP ARG GLU THR ILE ARG THR LEU VAL GLN THR GLY ILE SEQRES 12 B 199 ALA ARG GLY GLU ILE ARG PRO GLU VAL ASP ALA ASP ARG SEQRES 13 B 199 LEU ALA LEU LEU ILE ILE ALA THR MSE GLU GLY ALA VAL SEQRES 14 B 199 MSE LEU ALA ARG ILE LEU GLU THR ALA THR PRO LEU GLU SEQRES 15 B 199 HIS ALA TYR THR HIS LEU ALA THR TYR ILE THR GLN GLN SEQRES 16 B 199 VAL ARG LEU ALA MODRES 3QBM MSE A 1 MET SELENOMETHIONINE MODRES 3QBM MSE A 33 MET SELENOMETHIONINE MODRES 3QBM MSE A 118 MET SELENOMETHIONINE MODRES 3QBM MSE A 164 MET SELENOMETHIONINE MODRES 3QBM MSE A 169 MET SELENOMETHIONINE MODRES 3QBM MSE B 1 MET SELENOMETHIONINE MODRES 3QBM MSE B 33 MET SELENOMETHIONINE MODRES 3QBM MSE B 118 MET SELENOMETHIONINE MODRES 3QBM MSE B 164 MET SELENOMETHIONINE MODRES 3QBM MSE B 169 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 33 8 HET MSE A 118 8 HET MSE A 164 8 HET MSE A 169 8 HET MSE B 1 8 HET MSE B 33 8 HET MSE B 118 13 HET MSE B 164 8 HET MSE B 169 8 HET MG A 200 1 HET PEG A 203 7 HET PEG A 206 7 HET PEG A 207 7 HET PEG A 209 7 HET PGE A 210 10 HET MG B 201 1 HET PEG B 202 7 HET PEG B 204 7 HET PEG B 205 7 HET PEG B 208 7 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 PEG 8(C4 H10 O3) FORMUL 8 PGE C6 H14 O4 FORMUL 14 HOH *311(H2 O) HELIX 1 1 GLY A 0 GLY A 23 1 24 HELIX 2 2 ALA A 28 GLY A 37 1 10 HELIX 3 3 GLU A 39 ARG A 45 1 7 HELIX 4 4 SER A 49 ALA A 74 1 26 HELIX 5 5 HIS A 78 SER A 92 1 15 HELIX 6 6 TYR A 93 GLU A 95 5 3 HELIX 7 7 CYS A 103 ASP A 113 1 11 HELIX 8 8 ASN A 116 ARG A 144 1 29 HELIX 9 9 ASP A 152 GLU A 175 1 24 HELIX 10 10 ALA A 177 VAL A 195 1 19 HELIX 11 11 MSE B 1 GLY B 23 1 23 HELIX 12 12 ALA B 28 THR B 36 1 9 HELIX 13 13 GLY B 42 HIS B 46 5 5 HELIX 14 14 SER B 49 ALA B 74 1 26 HELIX 15 15 HIS B 78 SER B 92 1 15 HELIX 16 16 TYR B 93 GLU B 95 5 3 HELIX 17 17 CYS B 103 ASP B 113 1 11 HELIX 18 18 ASN B 116 ARG B 144 1 29 HELIX 19 19 ASP B 152 GLU B 175 1 24 HELIX 20 20 ALA B 177 VAL B 195 1 19 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ILE A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N ALA A 34 1555 1555 1.33 LINK C PRO A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N LEU A 119 1555 1555 1.34 LINK C THR A 163 N MSE A 164 1555 1555 1.32 LINK C MSE A 164 N GLU A 165 1555 1555 1.33 LINK C VAL A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N LEU A 170 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.34 LINK C ILE B 32 N MSE B 33 1555 1555 1.34 LINK C MSE B 33 N ALA B 34 1555 1555 1.33 LINK C PRO B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N LEU B 119 1555 1555 1.32 LINK C THR B 163 N MSE B 164 1555 1555 1.33 LINK C MSE B 164 N GLU B 165 1555 1555 1.34 LINK C VAL B 168 N MSE B 169 1555 1555 1.34 LINK C MSE B 169 N LEU B 170 1555 1555 1.33 LINK MG MG A 200 O HOH B 241 1555 1555 1.99 LINK O ILE A 110 MG MG A 200 1555 1555 2.02 LINK OD1 ASP B 113 MG MG B 201 1555 1555 2.03 LINK O ILE B 110 MG MG B 201 1555 1555 2.05 LINK MG MG B 201 O HOH B 311 1555 1555 2.06 LINK MG MG A 200 O HOH A 238 1555 1555 2.08 LINK MG MG B 201 O HOH B 314 1555 1555 2.09 LINK MG MG B 201 O HOH A 312 1555 1555 2.11 LINK MG MG A 200 O HOH A 240 1555 1555 2.14 LINK MG MG B 201 O HOH A 313 1555 1555 2.14 LINK OD1 ASP A 113 MG MG A 200 1555 1555 2.15 LINK MG MG A 200 O HOH B 239 1555 1555 2.27 SITE 1 AC1 6 ILE A 110 ASP A 113 HOH A 238 HOH A 240 SITE 2 AC1 6 HOH B 239 HOH B 241 SITE 1 AC2 3 THR A 115 ASN A 116 PGE A 210 SITE 1 AC3 5 THR A 189 THR A 192 HOH A 275 HOH A 363 SITE 2 AC3 5 HOH A 442 SITE 1 AC4 3 HOH A 501 HOH A 502 HOH A 503 SITE 1 AC5 4 VAL A 151 TYR A 190 GLN A 194 HOH A 376 SITE 1 AC6 5 GLU A 51 ALA A 54 ASN A 116 PEG A 203 SITE 2 AC6 5 HOH A 246 SITE 1 AC7 6 HOH A 312 HOH A 313 ILE B 110 ASP B 113 SITE 2 AC7 6 HOH B 311 HOH B 314 SITE 1 AC8 5 HIS A 76 LYS A 77 THR A 82 ALA B 143 SITE 2 AC8 5 HOH B 318 SITE 1 AC9 6 GLU B 51 ASN B 116 LEU B 119 PEG B 205 SITE 2 AC9 6 HOH B 411 HOH B 466 SITE 1 BC1 4 THR B 115 ASN B 116 PEG B 204 HOH B 466 SITE 1 BC2 3 GLU A 175 ASP B 114 ARG B 120 CRYST1 43.335 106.449 45.577 90.00 110.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023076 0.000000 0.008831 0.00000 SCALE2 0.000000 0.009394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023492 0.00000 MASTER 435 0 21 20 0 0 17 6 0 0 0 32 END