HEADER PROTEIN FIBRIL 07-JAN-11 3Q9I TITLE LVFFA SEGMENT FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED ON 42-MEMBERED TITLE 2 MACROCYCLE SCAFFOLD, BROMIDE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE LV(4BF)FA(ORN)(HAO)LK(ORN); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LVFFA SEGMENT FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED COMPND 6 ON 42-MEMBERED MACROCYCLE SCAFFOLD SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS BETA SHEET TETRAMER, BETA STRAND, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,M.R.SAWAYA,D.EISENBERG,J.S.NOWICK,P.CHENG,J.ZHENG REVDAT 1 08-JUN-11 3Q9I 0 JRNL AUTH C.LIU,M.R.SAWAYA,P.N.CHENG,J.ZHENG,J.S.NOWICK,D.EISENBERG JRNL TITL CHARACTERISTICS OF AMYLOID-RELATED OLIGOMERS REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURES OF MACROCYCLIC BETA-SHEET MIMICS. JRNL REF J.AM.CHEM.SOC. V. 133 6736 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21473620 JRNL DOI 10.1021/JA200222N REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1033 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.470 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 789 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 598 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 933 ; 1.160 ; 2.515 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1378 ; 0.623 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 24 ; 8.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 8 ;11.177 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 80 ;13.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 96 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 648 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 224 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 296 ; 1.785 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 176 ; 0.669 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 376 ; 2.458 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 493 ; 3.744 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 557 ; 4.750 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9670 6.1330 15.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: 0.0694 REMARK 3 T33: 0.0435 T12: -0.0086 REMARK 3 T13: 0.0299 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.3035 L22: 6.5261 REMARK 3 L33: 3.5755 L12: 0.1829 REMARK 3 L13: -0.5585 L23: 0.3077 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.0227 S13: -0.1169 REMARK 3 S21: -0.0932 S22: 0.0416 S23: -0.1005 REMARK 3 S31: 0.1916 S32: -0.1520 S33: 0.0864 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6260 4.1970 24.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.1484 REMARK 3 T33: 0.0494 T12: 0.0689 REMARK 3 T13: 0.0408 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 0.0171 L22: 4.9041 REMARK 3 L33: 2.8980 L12: 0.0605 REMARK 3 L13: -0.1871 L23: 0.7705 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.0725 S13: -0.0383 REMARK 3 S21: 0.0783 S22: -0.1668 S23: 0.0876 REMARK 3 S31: 0.3074 S32: 0.4200 S33: 0.2045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5960 9.4670 17.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: 0.0891 REMARK 3 T33: 0.0223 T12: 0.0200 REMARK 3 T13: 0.0114 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.2541 L22: 5.5760 REMARK 3 L33: 4.1820 L12: -0.8951 REMARK 3 L13: 0.1675 L23: -0.4379 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.2388 S13: -0.1308 REMARK 3 S21: -0.1307 S22: -0.0528 S23: 0.0359 REMARK 3 S31: -0.0029 S32: 0.1824 S33: 0.1301 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7170 9.8340 9.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.0250 T22: 0.0636 REMARK 3 T33: 0.0104 T12: -0.0183 REMARK 3 T13: 0.0089 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.6092 L22: 5.8193 REMARK 3 L33: 2.5035 L12: -2.6691 REMARK 3 L13: -1.4647 L23: 0.2567 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.1380 S13: -0.0354 REMARK 3 S21: -0.1353 S22: 0.0452 S23: -0.0380 REMARK 3 S31: 0.1818 S32: -0.2401 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 9 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3570 13.4140 20.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0891 REMARK 3 T33: 0.0210 T12: 0.0002 REMARK 3 T13: 0.0036 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.2326 L22: 2.2266 REMARK 3 L33: 2.0893 L12: 0.1164 REMARK 3 L13: 0.1910 L23: -0.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: 0.0851 S13: 0.0838 REMARK 3 S21: -0.0126 S22: 0.0824 S23: 0.0123 REMARK 3 S31: -0.0303 S32: 0.0822 S33: -0.0517 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 9 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0950 8.3930 28.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0995 REMARK 3 T33: 0.0187 T12: 0.0124 REMARK 3 T13: 0.0099 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.3842 L22: 3.2352 REMARK 3 L33: 5.6370 L12: 1.2795 REMARK 3 L13: 1.2659 L23: 1.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: -0.1733 S13: -0.0448 REMARK 3 S21: 0.0530 S22: -0.1641 S23: 0.0046 REMARK 3 S31: -0.0168 S32: -0.0195 S33: 0.2283 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 9 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8970 15.6540 4.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.0289 T22: 0.0747 REMARK 3 T33: 0.0123 T12: 0.0005 REMARK 3 T13: 0.0018 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.7865 L22: 2.0849 REMARK 3 L33: 2.8877 L12: -1.9729 REMARK 3 L13: 1.5796 L23: -1.8338 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: 0.1527 S13: 0.0405 REMARK 3 S21: -0.0203 S22: -0.0125 S23: -0.0228 REMARK 3 S31: 0.0447 S32: -0.0254 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 9 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3750 18.3860 12.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.0632 REMARK 3 T33: 0.0080 T12: 0.0016 REMARK 3 T13: -0.0008 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.0881 L22: 2.1271 REMARK 3 L33: 1.8082 L12: -1.0308 REMARK 3 L13: 0.9984 L23: 0.5605 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: -0.1455 S13: 0.1078 REMARK 3 S21: -0.0157 S22: 0.0397 S23: 0.0028 REMARK 3 S31: -0.1053 S32: 0.0517 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 11 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7050 19.9770 12.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.2125 REMARK 3 T33: 0.1523 T12: 0.0133 REMARK 3 T13: -0.0146 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 33.4944 L22: -0.1968 REMARK 3 L33: 160.2392 L12: -0.5827 REMARK 3 L13: 30.6492 L23: 6.6751 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -1.0930 S13: 1.1196 REMARK 3 S21: 0.0179 S22: 0.0633 S23: -0.0605 REMARK 3 S31: 0.7850 S32: 0.2509 S33: -0.0634 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 11 G 26 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3300 16.2970 11.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.0532 REMARK 3 T33: 0.0023 T12: 0.0387 REMARK 3 T13: -0.0077 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5162 L22: 0.1823 REMARK 3 L33: 0.3295 L12: 0.2663 REMARK 3 L13: -0.5632 L23: -0.2383 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0689 S13: -0.0126 REMARK 3 S21: 0.0523 S22: -0.0121 S23: 0.0002 REMARK 3 S31: -0.0405 S32: 0.0079 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7460 15.2420 24.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.4442 T22: 0.3713 REMARK 3 T33: 0.3162 T12: 0.1230 REMARK 3 T13: -0.2019 T23: -0.1136 REMARK 3 L TENSOR REMARK 3 L11: 72.3210 L22: 133.5011 REMARK 3 L33: 31.4750 L12: -70.5391 REMARK 3 L13: -0.5421 L23: 41.2374 REMARK 3 S TENSOR REMARK 3 S11: -2.1524 S12: -1.3067 S13: 0.8685 REMARK 3 S21: -0.9940 S22: 1.3723 S23: 2.2560 REMARK 3 S31: -0.3632 S32: 1.6571 S33: 0.7801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q9I COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16219 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 0.17 MM REMARK 280 CALCIUM CHLORIDE DEHYDRATE, 20% (V/V) 2-PROPANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.25550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.49000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.38325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.49000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.12775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.49000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.38325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.49000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.12775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.25550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 4BF A 3 19.94 REMARK 500 4BF B 3 12.60 REMARK 500 4BF C 3 13.61 REMARK 500 4BF E 3 14.36 REMARK 500 4BF F 3 17.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA E 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA H 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL H 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q9G RELATED DB: PDB REMARK 900 AMYLOIDOGENIC SEGMENTS ON 42-MEMBERED MACROCYCLE FRAMEWORK REMARK 900 RELATED ID: 3Q9H RELATED DB: PDB REMARK 900 RELATED ID: 3Q9J RELATED DB: PDB DBREF 3Q9I A 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I B 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I C 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I D 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I E 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I F 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I G 1 10 PDB 3Q9I 3Q9I 1 10 DBREF 3Q9I H 1 10 PDB 3Q9I 3Q9I 1 10 SEQRES 1 A 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 B 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 C 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 D 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 E 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 F 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 G 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN SEQRES 1 H 10 LEU VAL 4BF PHE ALA ORN HAO LEU LYS ORN MODRES 3Q9I 4BF A 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN A 6 ALA L-ORNITHINE MODRES 3Q9I ORN A 10 ALA L-ORNITHINE MODRES 3Q9I 4BF B 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN B 6 ALA L-ORNITHINE MODRES 3Q9I ORN B 10 ALA L-ORNITHINE MODRES 3Q9I 4BF C 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN C 6 ALA L-ORNITHINE MODRES 3Q9I ORN C 10 ALA L-ORNITHINE MODRES 3Q9I 4BF D 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN D 6 ALA L-ORNITHINE MODRES 3Q9I ORN D 10 ALA L-ORNITHINE MODRES 3Q9I 4BF E 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN E 6 ALA L-ORNITHINE MODRES 3Q9I ORN E 10 ALA L-ORNITHINE MODRES 3Q9I 4BF F 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN F 6 ALA L-ORNITHINE MODRES 3Q9I ORN F 10 ALA L-ORNITHINE MODRES 3Q9I 4BF G 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN G 6 ALA L-ORNITHINE MODRES 3Q9I ORN G 10 ALA L-ORNITHINE MODRES 3Q9I 4BF H 3 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9I ORN H 6 ALA L-ORNITHINE MODRES 3Q9I ORN H 10 ALA L-ORNITHINE HET 4BF A 3 12 HET ORN A 6 8 HET HAO A 7 17 HET ORN A 10 8 HET 4BF B 3 12 HET ORN B 6 8 HET HAO B 7 17 HET ORN B 10 8 HET 4BF C 3 12 HET ORN C 6 8 HET HAO C 7 17 HET ORN C 10 8 HET 4BF D 3 12 HET ORN D 6 8 HET HAO D 7 17 HET ORN D 10 8 HET 4BF E 3 12 HET ORN E 6 8 HET HAO E 7 17 HET ORN E 10 8 HET 4BF F 3 12 HET ORN F 6 8 HET HAO F 7 17 HET ORN F 10 8 HET 4BF G 3 12 HET ORN G 6 8 HET HAO G 7 17 HET ORN G 10 8 HET 4BF H 3 12 HET ORN H 6 8 HET HAO H 7 17 HET ORN H 10 8 HET CL A 11 1 HET CL A 12 1 HET GOL B 11 6 HET GOL C 11 6 HET GOL D 11 6 HET CL D 12 1 HET CL D 13 1 HET CL E 11 1 HET CL E 12 1 HET IPA E 13 4 HET IPA H 11 4 HET CL H 12 1 HETNAM 4BF 4-BROMO-L-PHENYLALANINE HETNAM ORN L-ORNITHINE HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO) HETNAM 2 HAO ACETIC ACID HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETSYN 4BF P-BROMO-L-PHENYLALANINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 1 4BF 8(C9 H10 BR N O2) FORMUL 1 ORN 16(C5 H12 N2 O2) FORMUL 1 HAO 8(C10 H11 N3 O5) FORMUL 9 CL 7(CL 1-) FORMUL 11 GOL 3(C3 H8 O3) FORMUL 18 IPA 2(C3 H8 O) FORMUL 21 HOH *43(H2 O) SHEET 1 A 2 VAL A 2 PHE A 4 0 SHEET 2 A 2 VAL B 2 PHE B 4 -1 O VAL B 2 N PHE A 4 SHEET 1 B 2 VAL C 2 PHE C 4 0 SHEET 2 B 2 VAL D 2 PHE D 4 -1 O PHE D 4 N VAL C 2 SHEET 1 C 2 VAL E 2 4BF E 3 0 SHEET 2 C 2 4BF F 3 PHE F 4 1 O PHE F 4 N VAL E 2 SHEET 1 D 2 4BF G 3 PHE G 4 0 SHEET 2 D 2 VAL H 2 4BF H 3 1 O VAL H 2 N PHE G 4 LINK C VAL A 2 N 4BF A 3 1555 1555 1.35 LINK C 4BF A 3 N PHE A 4 1555 1555 1.36 LINK C23 HAO A 7 N LEU A 8 1555 1555 1.28 LINK C VAL B 2 N 4BF B 3 1555 1555 1.35 LINK C 4BF B 3 N PHE B 4 1555 1555 1.35 LINK C23 HAO B 7 N LEU B 8 1555 1555 1.28 LINK C VAL C 2 N 4BF C 3 1555 1555 1.35 LINK C 4BF C 3 N PHE C 4 1555 1555 1.35 LINK C23 HAO C 7 N LEU C 8 1555 1555 1.28 LINK C VAL D 2 N 4BF D 3 1555 1555 1.35 LINK C 4BF D 3 N PHE D 4 1555 1555 1.33 LINK C23 HAO D 7 N LEU D 8 1555 1555 1.29 LINK C VAL E 2 N 4BF E 3 1555 1555 1.36 LINK C 4BF E 3 N PHE E 4 1555 1555 1.36 LINK C23 HAO E 7 N LEU E 8 1555 1555 1.29 LINK C VAL F 2 N 4BF F 3 1555 1555 1.35 LINK C 4BF F 3 N PHE F 4 1555 1555 1.37 LINK C23 HAO F 7 N LEU F 8 1555 1555 1.28 LINK C VAL G 2 N 4BF G 3 1555 1555 1.36 LINK C 4BF G 3 N PHE G 4 1555 1555 1.35 LINK C23 HAO G 7 N LEU G 8 1555 1555 1.29 LINK C VAL H 2 N 4BF H 3 1555 1555 1.33 LINK C 4BF H 3 N PHE H 4 1555 1555 1.35 LINK C23 HAO H 7 N LEU H 8 1555 1555 1.29 LINK C LYS A 9 NE ORN A 10 1555 1555 1.28 LINK C ALA F 5 NE ORN F 6 1555 1555 1.28 LINK C ALA D 5 NE ORN D 6 1555 1555 1.29 LINK C ALA A 5 NE ORN A 6 1555 1555 1.29 LINK C ALA H 5 NE ORN H 6 1555 1555 1.29 LINK C LYS C 9 NE ORN C 10 1555 1555 1.29 LINK C ALA B 5 NE ORN B 6 1555 1555 1.29 LINK C LYS E 9 NE ORN E 10 1555 1555 1.29 LINK C ALA E 5 NE ORN E 6 1555 1555 1.30 LINK C LYS H 9 NE ORN H 10 1555 1555 1.30 LINK C ALA G 5 NE ORN G 6 1555 1555 1.30 LINK C LYS F 9 NE ORN F 10 1555 1555 1.30 LINK C ALA C 5 NE ORN C 6 1555 1555 1.30 LINK C LYS B 9 NE ORN B 10 1555 1555 1.30 LINK C LYS D 9 NE ORN D 10 1555 1555 1.30 LINK C LYS G 9 NE ORN G 10 1555 1555 1.30 LINK C ORN G 6 N8 HAO G 7 1555 1555 1.32 LINK C ORN A 6 N8 HAO A 7 1555 1555 1.33 LINK C ORN C 6 N8 HAO C 7 1555 1555 1.33 LINK C ORN F 6 N8 HAO F 7 1555 1555 1.33 LINK C ORN H 6 N8 HAO H 7 1555 1555 1.33 LINK C ORN D 6 N8 HAO D 7 1555 1555 1.34 LINK C ORN B 6 N8 HAO B 7 1555 1555 1.34 LINK C ORN E 6 N8 HAO E 7 1555 1555 1.34 LINK N LEU D 1 C ORN D 10 1555 1555 1.34 LINK N LEU C 1 C ORN C 10 1555 1555 1.34 LINK N LEU F 1 C ORN F 10 1555 1555 1.34 LINK N LEU G 1 C ORN G 10 1555 1555 1.34 LINK N LEU B 1 C ORN B 10 1555 1555 1.35 LINK N LEU A 1 C ORN A 10 1555 1555 1.35 LINK N LEU H 1 C ORN H 10 1555 1555 1.35 LINK N LEU E 1 C ORN E 10 1555 1555 1.35 SITE 1 AC1 5 CL A 12 ALA C 5 ORN C 6 ORN D 10 SITE 2 AC1 5 LEU H 8 SITE 1 AC2 5 ALA A 5 ORN A 6 ORN B 10 GOL C 11 SITE 2 AC2 5 LEU E 8 SITE 1 AC3 7 ORN A 6 ORN B 10 GOL B 11 4BF C 3 SITE 2 AC3 7 ALA C 5 HAO C 7 HOH C 37 SITE 1 AC4 3 LEU D 8 ORN D 10 LYS G 9 SITE 1 AC5 3 HAO D 7 LEU D 8 LYS G 9 SITE 1 AC6 3 LYS E 9 ORN G 6 ORN H 6 SITE 1 AC7 3 ORN E 6 ORN F 6 LYS H 9 SITE 1 AC8 5 LEU E 1 ORN E 10 HOH E 18 VAL F 2 SITE 2 AC8 5 ORN F 10 SITE 1 AC9 4 LEU F 8 ORN G 10 ORN H 10 HOH H 16 SITE 1 BC1 1 ORN H 10 SITE 1 BC2 4 ORN A 6 HAO E 7 LEU E 8 ORN H 6 SITE 1 BC3 3 ORN A 6 ORN D 10 GOL D 11 CRYST1 58.980 58.980 128.511 90.00 90.00 90.00 P 43 21 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016955 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007781 0.00000 MASTER 530 0 44 0 8 0 16 6 0 0 0 8 END